Chy2G046880 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G046880
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	chrH02: 27919762 .. 27920861 (+)
RNA-Seq Expression	Chy2G046880
Synteny	Chy2G046880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGAATTATTCCCCTTGAAGCAGTTGGGCGGTATAAAGAATGTATCTTGTTGTTATGCAGTTGGACTTACAATTTTGGTGGTCTTGCTGTGATGAAGCAGGTTACCTAAATTTCAAGAGAACTACCTATTTTCTTTCCTCACAAACAACTGCTAACATTGTATCTTTCTGTCAGTAGGTGTAGAAATTTGTAGAAATTTACAAAGAAAAGCAACCACTCCACGATCTATCTTATTTCTTTATAGGCAAAAGTGAACAACTTGAATCCTCACTCTGTTTTATACCTTGCCTAATTCAATGCACATTCAACCTCCAACCAAACAAAGTCAAAGAGTTCTAAAACATGAAACAAATTTTTCAGAACCAACCTCAAGGTCATCTTTTTATCTTCTTCTATCAATAATTGTTCTTTAGTTGTAGCTACTTTTCCAAGAGATGATGCTGAAATAGAAAGGAAAATCCATTAAAGTAAAGAATTATTTGTGCCAGATGATTTGTTTTCCATATAAAGTAATAACTTTTCAAAATTTTAATCTTTAGTTTTTCTTGTTCTCTATAGTTTCTTTTGAAGGGAAAACAAAACGAAAAAAATAAAAGATTATAGATTATTGTAGGAAAGTTTGTTCTGAATTTTTTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTCTCTCTTTCTTCCCCCCCCCCCCAAATTATGCTATGATTTGAATTTTCTCTGTTGTGAATAGTTGTGCTGGCTTGTGTTGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGATGGACCTTGGGAACGGCACAATGCCTCTGCACTGCTAGTTTCTCTGACACAAGTTATCTTCTAG

mRNA sequence

ATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGAATTATTCCCCTTGAAGCAGTTGGGCGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTATATCTGCTTCTAGGGATGGATGGACCTTGGGAACGGCACAATGCCTCTGCACTGCTAGTTTCTCTGACACAAGTTATCTTCTAG

Coding sequence (CDS)

ATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGAATTATTCCCCTTGAAGCAGTTGGGCGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTATATCTGCTTCTAGGGATGGATGGACCTTGGGAACGGCACAATGCCTCTGCACTGCTAGTTTCTCTGACACAAGTTATCTTCTAG

Protein sequence

MSCTIVTLEKIEVYTKDVSIKIAPPFDFMELFPLKQLGDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGLYLLLGMDGPWERHNASALLVSLTQVIF*

Homology

[Close]

BLAST of Chy2G046880 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.3e-41
Identity = 89/123 (72.36%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMELFPLKQLG---------------------- 60
           MSCTIVTLEKIEVYTKDVSIKIAPPFDFM++ PL+ +G                      
Sbjct: 1   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 60

Query: 61  ------DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 96
                 DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC
Sbjct: 61  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 120

[Close]

BLAST of Chy2G046880 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 39  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGLYLL 98
           DTGPGPYQV PP CDPMQHGQTQPYPPIVPPQGETKS+TVPPSMKTKFRGDGFCRGLYLL
Sbjct: 21  DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLYLL 80

Query: 99  LGMDGPWERHNASALLVSLTQVIF 123
           LGM+GPWERH ASAL+VSLTQVIF
Sbjct: 81  LGMEGPWERHYASALIVSLTQVIF 104

[Close]

BLAST of Chy2G046880 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 36 QLGDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 95
          Q  DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETKS+ V P  +T  +GDGFCRGL
Sbjct: 8  QTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of Chy2G046880 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 173 bits (438), Expect = 3.83e-53
Identity = 89/123 (72.36%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMELFPLKQLG---------------------- 60
           MSCTIVTLEKIEVYTKDVSIKIAPPFDFM++ PL+ +G                      
Sbjct: 3   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 62

Query: 61  ------DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 95
                 DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC
Sbjct: 63  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 122

[Close]

BLAST of Chy2G046880 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 3.27e-52
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 39  DTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGLYLL 98
           DTGPGPYQV PP CDPMQHGQTQPYPPIVPPQGETKS+TVPPSMKTKFRGDGFCRGLYLL
Sbjct: 21  DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLYLL 80

Query: 99  LGMDGPWERHNASALLVSLTQVIF 122
           LGM+GPWERH ASAL+VSLTQVIF
Sbjct: 81  LGMEGPWERHYASALIVSLTQVIF 104

[Close]

BLAST of Chy2G046880 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (305), Expect = 3.97e-33
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 36  QLGDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 95
           Q  DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCRGL
Sbjct: 8   QTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 67

Query: 96  --------YLLLGMDGPWERHNASALLVSLTQVIF 122
                   YLLLGM+ P + H A ALLV LTQVIF
Sbjct: 68  LVLLLLPRYLLLGMEDPCKCHFAPALLVRLTQVIF 102

[Close]

BLAST of Chy2G046880 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 7.84e-24
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 51  MCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL--------YLLLGMD 110
           MCDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCRGL        YLLLGM+
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLLLLPRYLLLGME 60

Query: 111 GPWERHNASALLVSLTQVIF 122
            P + H A ALLV LTQVIF
Sbjct: 61  DPCKCHFAPALLVRLTQVIF 80

[Close]

BLAST of Chy2G046880 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 2.76e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 36 QLGDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 95
          Q  DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETKS+ V P  +T  +GDGFCRGL
Sbjct: 8  QTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:

BLAST of Chy2G046880 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G046880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD8	7.3e-41	72.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A5A7UV38	1.8e-39	92.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1HZZ2	2.5e-17	73.33	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]

BLAST of Chy2G046880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652444.1	3.83e-53	72.36	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
KAA0058026.1	3.27e-52	92.86	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
KAG7021578.1	3.97e-33	65.26	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587617.1	7.84e-24	62.50	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969088.1	2.76e-23	73.33	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]

BLAST of Chy2G046880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G046880.1	Chy2G046880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane