Chy2G046260 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G046260
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	VQ motif-containing protein 20
Location	chrH02: 27471332 .. 27472069 (-)
RNA-Seq Expression	Chy2G046260
Synteny	Chy2G046260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTCAACAACAACAGCAACAACAAATCCATGGAAAAAGGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACATCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGTCCATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGGCATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTTGCTACAACGAAATCCGTCGTGGATGAGAATAATAATAATAATAATAAAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCATCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGGCCGGCGATTTTTGAGCCGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGCGAATTTTAG

mRNA sequence

ATGAGTCCTCAACAACAACAGCAACAACAAATCCATGGAAAAAGGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACATCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGTCCATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGGCATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTTGCTACAACGAAATCCGTCGTGGATGAGAATAATAATAATAATAATAAAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCATCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGGCCGGCGATTTTTGAGCCGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGCGAATTTTAG

Coding sequence (CDS)

ATGAGTCCTCAACAACAACAGCAACAACAAATCCATGGAAAAAGGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACATCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGTCCATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGGCATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTTGCTACAACGAAATCCGTCGTGGATGAGAATAATAATAATAATAATAAAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCATCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGGCCGGCGATTTTTGAGCCGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGCGAATTTTAG

Protein sequence

MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF*

Homology

[Close]

BLAST of Chy2G046260 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-28
Identity = 106/272 (38.97%), Postives = 132/272 (48.53%), Query Frame = 0


Query: 12  HGKRDNQITNNG---NNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLVHG 71
           H KR+    N+G      P   P  LK+NKDSH+I+K        SPSS SS        
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-------- 80

Query: 72  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEA--STTKLAT 131
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D     + T    
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 132 TKSV--------VDENNNNNNKGS-------------------KAAVVNDDNESSSVVTT 191
            KS+        VD  NN N  G                       ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 200

Query: 192 DENCCGGGGSGLMEVGQVNSCF---------GPAIFEPPPPPPPQLAN-------SYLTN 234
           +EN        + E GQVNS            P    PPPPPPP + +       +YL  
Sbjct: 201 EEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPT 260

[Close]

BLAST of Chy2G046260 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-07
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 31  PHPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHSP 90
           P  LK+  +SH I+KTSS  +   P           HG A+          PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRP-----------HGRAS----------PVIIYAHSP 73

Query: 91  KIIHTHPRDFMALVQKLTGMSR--SDHDHEASTTKLATTKSVVDEN 135
           K+IHT   DFMALVQ+LTG+      +  E+S++ +    +V D+N
Sbjct: 74  KVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDN 98

[Close]

BLAST of Chy2G046260 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.3e-05
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 31  PHPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHS 90
           P PLK+  DSH +I+K   +     P    +      H    + ++PPP   PV IYT +
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQT------HQQEPSQSRPPP--GPVNIYTVT 75

Query: 91  PKIIHTHPRDFMALVQKLTGM---SRSDHDHEASTTKLATTKSVVDENNNNNNKGSKAAV 150
           P+IIHTHP +FM LVQ+LTG    S +     +ST++   T ++VD ++   +  ++ AV
Sbjct: 76  PRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTSHGLISPAARFAV 135

Query: 151 VNDDNESSSVVTTDENCCGGGGSGLME 174
               N S+ + T        GG G M+
Sbjct: 136 TEKANISNELGTF------VGGEGTMD 148

[Close]

BLAST of Chy2G046260 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.9e-103
Identity = 221/253 (87.35%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSN--TSSPSSS 60
           MSP    QQQIHGKRDNQI NNG NKPILCP PLKINKDSHLIRKTSSSSN  TSSPSSS
Sbjct: 1   MSP----QQQIHGKRDNQINNNG-NKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSS 60

Query: 61  SSSTTSLVHGV--AAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD 120
           SSSTTSLV+GV  AAAAA  P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD D
Sbjct: 61  SSSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSD-D 120

Query: 121 HEASTTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVG 180
           HEAS TKLATTK VVDE NNNNNKGSK AVV+DDNESSSVVTTDENCC GGGGSG+MEVG
Sbjct: 121 HEAS-TKLATTKPVVDE-NNNNNKGSK-AVVSDDNESSSVVTTDENCCGGGGGSGMMEVG 180

Query: 181 QVNSCFGPAIFEPPP----PPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFG 240
           QVNSCFGP IFEPPP    PPPPQLANSYLTNIPIYTPNS EFLC NQPIFNYDDSLLFG
Sbjct: 181 QVNSCFGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFG 240

Query: 241 GNRSVNDFCEYSE 245
           GNR VNDFCEYSE
Sbjct: 241 GNRVVNDFCEYSE 244

[Close]

BLAST of Chy2G046260 vs. ExPASy TrEMBL
Match: A0A0A0LPK7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.1e-102
Identity = 206/245 (84.08%), Postives = 208/245 (84.90%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSP QQQQQQIHGK DNQITNNGNNKPILCP PLKINKDSHLIRKTSSSSNTSSPSSSSS
Sbjct: 1   MSP-QQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSL +GVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+          
Sbjct: 61  STTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGIC--------- 120

Query: 121 TTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSC 180
                                 KAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSC
Sbjct: 121 --------------------CCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSC 180

Query: 181 FGPAIFEPPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC 240
           FGPAIFE PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC
Sbjct: 181 FGPAIFE-PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC 214

Query: 241 EYSEF 246
           EYSEF
Sbjct: 241 EYSEF 214

[Close]

BLAST of Chy2G046260 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.3e-86
Identity = 196/250 (78.40%), Postives = 206/250 (82.40%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSP  QQQQQIHGKRDNQ TNN  NKP+  P  LKINKDSHLIRK+SSSSNTSSPSSSSS
Sbjct: 1   MSP--QQQQQIHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSL++GV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAS
Sbjct: 61  STTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAS 120

Query: 121 TTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVNS 180
           T   AT KSVVDE    NNK SK  VVNDDNESSSVVTTDENCCGG G SG +E GQVNS
Sbjct: 121 TK--ATAKSVVDE----NNKASK--VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNS 180

Query: 181 CFGPAIFE-PPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---RS 240
           CFGPAIFE PPPPPPPQLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    S
Sbjct: 181 CFGPAIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLS 237

Query: 241 VNDFCEYSEF 246
            N   ++SEF
Sbjct: 241 SNGVSDFSEF 237

[Close]

BLAST of Chy2G046260 vs. ExPASy TrEMBL
Match: A0A5A7V0G0 (VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001740 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 6.9e-83
Identity = 194/253 (76.68%), Postives = 204/253 (80.63%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSP Q QQQQIHGKRDNQI NN  NKP L P  LKINKDSHLIRK+SSSSNTSSPSSSSS
Sbjct: 1   MSP-QHQQQQIHGKRDNQINNNA-NKP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSLV+GV  A AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAS
Sbjct: 61  STTSLVNGVPTAVAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAS 120

Query: 121 TTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQVNS 180
           T   AT KSV     + NNK SK  VVNDDNESSSV+TTDENCC G G SG +E GQVNS
Sbjct: 121 TK--ATAKSV-----DENNKVSK--VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNS 180

Query: 181 CFGPAIFE---PPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR-- 240
           CFGPA FE   PPPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+   
Sbjct: 181 CFGPASFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIP 238

Query: 241 --SVNDFCEYSEF 246
             S N   ++SEF
Sbjct: 241 SLSSNGISDFSEF 238

[Close]

BLAST of Chy2G046260 vs. ExPASy TrEMBL
Match: A0A1S3BCI6 (VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 9.0e-83
Identity = 194/253 (76.68%), Postives = 204/253 (80.63%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSP Q QQQQIHGKRDNQI NN  NKP L P  LKINKDSHLIRK+SSSSNTSSPSSSSS
Sbjct: 1   MSP-QHQQQQIHGKRDNQINNNA-NKP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSLV+GV  A AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAS
Sbjct: 61  STTSLVNGVPTAVAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAS 120

Query: 121 TTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQVNS 180
           T   AT KSV     + NNK SK  VVNDDNESSSV+TTDENCC G G SG +E GQVNS
Sbjct: 121 TK--ATAKSV-----DENNKISK--VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNS 180

Query: 181 CFGPAIFE---PPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR-- 240
           CFGPA FE   PPPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+   
Sbjct: 181 CFGPASFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIP 238

Query: 241 --SVNDFCEYSEF 246
             S N   ++SEF
Sbjct: 241 SLSSNGISDFSEF 238

[Close]

BLAST of Chy2G046260 vs. NCBI nr
Match: XP_004138347.3 (VQ motif-containing protein 20 [Cucumis sativus])

HSP 1 Score: 453 bits (1166), Expect = 4.01e-160
Identity = 238/248 (95.97%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSPQQQ QQQIHGK DNQITNNGNNKPILCP PLKINKDSHLIRKTSSSSNTSSPSSSSS
Sbjct: 1   MSPQQQ-QQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSL +GVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS
Sbjct: 61  STTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120

Query: 121 TTKLATTKSVVDENNNNNN---KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV 180
           TTKLATTKS VDENNNNNN   KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV
Sbjct: 121 TTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV 180

Query: 181 NSCFGPAIFEPPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVN 240
           NSCFGPAIFEPPPPPP QLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVN
Sbjct: 181 NSCFGPAIFEPPPPPP-QLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVN 240

Query: 241 DFCEYSEF 245
           DFCEYSEF
Sbjct: 241 DFCEYSEF 246

[Close]

BLAST of Chy2G046260 vs. NCBI nr
Match: XP_008453685.1 (PREDICTED: VQ motif-containing protein 20 [Cucumis melo])

HSP 1 Score: 387 bits (993), Expect = 8.85e-134
Identity = 221/253 (87.35%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSN--TSSPSSS 60
           MSP    QQQIHGKRDNQI NNGN KPILCP PLKINKDSHLIRKTSSSSN  TSSPSSS
Sbjct: 1   MSP----QQQIHGKRDNQINNNGN-KPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSS 60

Query: 61  SSSTTSLVHGVAAAAAKP--PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD 120
           SSSTTSLV+GVAAAAA    P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD D
Sbjct: 61  SSSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSD-D 120

Query: 121 HEASTTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGG-SGLMEVG 180
           HEAST KLATTK VVDEN NNNNKGSKA VV+DDNESSSVVTTDENCCGGGG SG+MEVG
Sbjct: 121 HEAST-KLATTKPVVDEN-NNNNKGSKA-VVSDDNESSSVVTTDENCCGGGGGSGMMEVG 180

Query: 181 QVNSCFGPAIFEPPPPPP----PQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFG 240
           QVNSCFGP IFEPPPPPP    PQLANSYLTNIPIYTPNS EFLC NQPIFNYDDSLLFG
Sbjct: 181 QVNSCFGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFG 240

Query: 241 GNRSVNDFCEYSE 244
           GNR VNDFCEYSE
Sbjct: 241 GNRVVNDFCEYSE 244

[Close]

BLAST of Chy2G046260 vs. NCBI nr
Match: KGN63830.2 (hypothetical protein Csa_013231 [Cucumis sativus])

HSP 1 Score: 384 bits (987), Expect = 1.26e-129
Identity = 207/217 (95.39%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSPQQQ QQQIHGK DNQITNNGNNKPILCP PLKINKDSHLIRKTSSSSNTSSPSSSSS
Sbjct: 1   MSPQQQ-QQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSL +GVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS
Sbjct: 61  STTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120

Query: 121 TTKLATTKSVVDENNNNNN---KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV 180
           TTKLATTKS VDENNNNNN   KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV
Sbjct: 121 TTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQV 180

Query: 181 NSCFGPAIFEPPPPPPPQLANSYLTNIPIYTPNSTEF 214
           NSCFGPAIFEPPPPPP QLANSYLTNIPIYTPNSTEF
Sbjct: 181 NSCFGPAIFEPPPPPP-QLANSYLTNIPIYTPNSTEF 215

[Close]

BLAST of Chy2G046260 vs. NCBI nr
Match: XP_038876677.1 (VQ motif-containing protein 20 [Benincasa hispida])

HSP 1 Score: 337 bits (864), Expect = 3.23e-114
Identity = 201/259 (77.61%), Postives = 210/259 (81.08%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQ--ITNNGN---NKPILCPHPLKINKDSHLIRKTSSSSNTSSP 60
           MSPQ   QQQ+HGKRDNQ    NNGN   NKP LCP PLKINKDSHLIRK+SSSSNTSSP
Sbjct: 1   MSPQP--QQQLHGKRDNQNQSINNGNGNGNKP-LCPPPLKINKDSHLIRKSSSSSNTSSP 60

Query: 61  SSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDH 120
           SSSSSSTTSLV+GV       PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSD 
Sbjct: 61  SSSSSSTTSLVNGVK------PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD 120

Query: 121 DHEASTTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVG 180
             EAST   ATTKSV +     NNKGSK AVVNDDNESSSVVTTDENCCGGG SG++E G
Sbjct: 121 --EAST--KATTKSVDE-----NNKGSKKAVVNDDNESSSVVTTDENCCGGG-SGVVEGG 180

Query: 181 QVNSCFGPAIFEPPPPPPP-QLANSYLTNIPIYTPNSTEFLCTNQP-IFNYDDSLLFGGN 240
           QVNSCFG AIFEPPPPPPP QLANSYLTNIP+Y PNSTEFLCTNQP  FNYDDSLLFG +
Sbjct: 181 QVNSCFGAAIFEPPPPPPPPQLANSYLTNIPVYRPNSTEFLCTNQPSFFNYDDSLLFGAH 240

Query: 241 R-------SVNDFCEYSEF 245
                    +NDFCEYSEF
Sbjct: 241 NIPSLSSNGINDFCEYSEF 240

[Close]

BLAST of Chy2G046260 vs. NCBI nr
Match: KGN62345.1 (hypothetical protein Csa_018596 [Cucumis sativus])

HSP 1 Score: 332 bits (850), Expect = 3.92e-112
Identity = 196/250 (78.40%), Postives = 206/250 (82.40%), Query Frame = 0


Query: 1   MSPQQQQQQQIHGKRDNQITNNGNNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSS 60
           MSPQQ  QQQIHGKRDNQ TNN  NKP+  P  LKINKDSHLIRK+SSSSNTSSPSSSSS
Sbjct: 1   MSPQQ--QQQIHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSS 60

Query: 61  STTSLVHGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS 120
           STTSL++GV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSD   EAS
Sbjct: 61  STTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD--EAS 120

Query: 121 TTKLATTKSVVDENNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGS-GLMEVGQVNS 180
           T   AT KSVVDE    NNK SK  VVNDDNESSSVVTTDENCCGG GS G +E GQVNS
Sbjct: 121 T--KATAKSVVDE----NNKASK--VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNS 180

Query: 181 CFGPAIFEPPPPPPP-QLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---RS 240
           CFGPAIFEPPPPPPP QLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    S
Sbjct: 181 CFGPAIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLS 237

Query: 241 VNDFCEYSEF 245
            N   ++SEF
Sbjct: 241 SNGVSDFSEF 237

[Close]

BLAST of Chy2G046260 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 125.6 bits (314), Expect = 5.7e-29
Identity = 106/272 (38.97%), Postives = 132/272 (48.53%), Query Frame = 0


Query: 12  HGKRDNQITNNG---NNKPILCPHPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLVHG 71
           H KR+    N+G      P   P  LK+NKDSH+I+K        SPSS SS        
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-------- 80

Query: 72  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEA--STTKLAT 131
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D     + T    
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 132 TKSV--------VDENNNNNNKGS-------------------KAAVVNDDNESSSVVTT 191
            KS+        VD  NN N  G                       ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 200

Query: 192 DENCCGGGGSGLMEVGQVNSCF---------GPAIFEPPPPPPPQLAN-------SYLTN 234
           +EN        + E GQVNS            P    PPPPPPP + +       +YL  
Sbjct: 201 EEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPT 260

[Close]

BLAST of Chy2G046260 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-08
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 31  PHPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHSP 90
           P  LK+  +SH I+KTSS  +   P           HG A+          PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRP-----------HGRAS----------PVIIYAHSP 73

Query: 91  KIIHTHPRDFMALVQKLTGMSR--SDHDHEASTTKLATTKSVVDEN 135
           K+IHT   DFMALVQ+LTG+      +  E+S++ +    +V D+N
Sbjct: 74  KVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDN 98

[Close]

BLAST of Chy2G046260 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.0e-07
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 31  PHPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHS 90
           P PLK+  DSH +I+K   +     P    +      H    + ++PPP   PVIIYT S
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQT------HQQEPSQSRPPP--GPVIIYTVS 75

Query: 91  PKIIHTHPRDFMALVQKLTG---MSRSDHDHEASTTKLATTKSVVDENNNNNNKGSKAAV 150
           P+IIHTHP +FM LVQ+LTG    S +   + +ST+      ++VD ++   +  ++ AV
Sbjct: 76  PRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPAARFAV 135

Query: 151 VNDDNESSSVVTTDENCCGGGGSGLME 174
               N S+ + T        GG G M+
Sbjct: 136 TEKANISNELGTF------VGGEGTMD 148

[Close]

BLAST of Chy2G046260 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 31  PHPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLVHGVAAAAAKPPPQRHPVIIYTHS 90
           P PLK+  DSH +I+K   +     P    +      H    + ++PPP   PV IYT +
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQT------HQQEPSQSRPPP--GPVNIYTVT 75

Query: 91  PKIIHTHPRDFMALVQKLTGM---SRSDHDHEASTTKLATTKSVVDENNNNNNKGSKAAV 150
           P+IIHTHP +FM LVQ+LTG    S +     +ST++   T ++VD ++   +  ++ AV
Sbjct: 76  PRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTSHGLISPAARFAV 135

Query: 151 VNDDNESSSVVTTDENCCGGGGSGLME 174
               N S+ + T        GG G M+
Sbjct: 136 TEKANISNELGTF------VGGEGTMD 148

The following BLAST results are available for this feature:

BLAST of Chy2G046260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	8.0e-28	38.97	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	7.8e-07	38.68	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	3.3e-05	33.33	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of Chy2G046260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXM8	7.9e-103	87.35	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]
A0A0A0LPK7	5.1e-102	84.08	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=...	[more]
A0A0A0LKA6	2.3e-86	78.40	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A5A7V0G0	6.9e-83	76.68	VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BCI6	9.0e-83	76.68	VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4...	[more]

BLAST of Chy2G046260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138347.3	4.01e-160	95.97	VQ motif-containing protein 20 [Cucumis sativus]	[more]
XP_008453685.1	8.85e-134	87.35	PREDICTED: VQ motif-containing protein 20 [Cucumis melo]	[more]
KGN63830.2	1.26e-129	95.39	hypothetical protein Csa_013231 [Cucumis sativus]	[more]
XP_038876677.1	3.23e-114	77.61	VQ motif-containing protein 20 [Benincasa hispida]	[more]
KGN62345.1	3.92e-112	78.40	hypothetical protein Csa_018596 [Cucumis sativus]	[more]

BLAST of Chy2G046260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	5.7e-29	38.97	VQ motif-containing protein	[more]
AT1G68450.1	5.5e-08	38.68	VQ motif-containing protein	[more]
AT1G21326.1	8.0e-07	34.01	VQ motif-containing protein	[more]
AT1G21320.1	2.3e-06	33.33	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 87..111 e-value: 1.7E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..244
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G046260.1	Chy2G046260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding