Chy2G045270 (gene) Cucumber (hystrix) v1

Overview
NameChy2G045270
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 26696880 .. 26698278 (-)
RNA-Seq ExpressionChy2G045270
SyntenyChy2G045270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGAATAAGAATCACCAACAACAGAGCCAACAGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGCTTCGACAAACAATTGTAAACAACAGCAGCGACGACAATGGCAGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGATGGTTTTGTGTTCTCTTTGTTTTGTTTTGATTTTTTAAATTTATGCTTAGAAACAAACTTATTACCATAATGCTTAATATAATGTTTAAAAAGAATAATAATAATAATAATAATGTGAATAATAAAAGAAGACATATGAAGAACAAAGAAAACATGGTTTAAATGTTTAGGTCCAAGTAAATGTTGATGTGCCCAAATCCTTTATCTTTTCTATTTAAGTTTGACCAAAAACGAAAGTGGGAAAAGGAAAAAAGAAAGTATGAAATAGGAATAGAAAAGGATGGTGGTTTTGCTTTTTGTATCTTTTGATAATTACTCTTTTCTCCTTTGTAATGATGAATTATGTTGTATACGACTATGTTCTCGATCATTATTAATTATCAAAATCTAATCATCGAAATACATCACATTCTCATTTCTATGGTGGTTTTTCGATTTTGTAGCACCCACACTTGGTTTGTATAAGGTCTTTATTCTGTCACCAATTTGTAGATCTTAAAACCAACAGGATGGCCGTATGATTTGAAAATTTGTATAGACAAAAAGGTTAATTAACAGTTTTGTTTTTCTTCTTTTTGATGAACTAATTAAAGTAAAGAAAATATAGGATAAATTTTTGGACATTATTGAAAAAAAAAAATAGATAAGATAGAGCGGAGTGGGCATTGTGACACAAAAATGAGCTTAAAGAGAGGATTTGCCAAAGTCACAATGAGCCCGATCTCACCAACATCAACCTAACAAAATATGACTACACATATTGCTCTAACTCAAAACATCGTCCTATAACCAAAATGAGCTAGCCCAAACCTAACAAAATCCTCAAATTTTCACTTTTAAATCCTTCATATTGCACCACATTCTACTGGAAAATACATTTTGTTTTTACAAGTTGCACTCTTTTATTTGTTATTGTTATTTCATGCTTTTTTTAAATATAAAATATTGGCATCAACCAATCTTACTTTTAACACCTAAACTTTTATTAATATCTATTAGGATAGAAATGGATTTAATCCTGTTTTGATTCCTAAATTTTGTGTATCTTGTTTTATTTTAAAATTTATTTTGGTTCAGTTCATATCAAATCAAAATCAAATAATGTTTTCTTTAACCTCATGTTTATTTTCTATTTTTTTAGATCTACAGAGTAGCAGCTGCAGCTTCGTAA

mRNA sequence

ATGGATGTGAATAAGAATCACCAACAACAGAGCCAACAGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGCTTCGACAAACAATTGTAAACAACAGCAGCGACGACAATGGCAGCAGAGCAGAAATTCGCGGCCCCTCGGAGATCTACAGAGTAGCAGCTGCAGCTTCGTAA

Coding sequence (CDS)

ATGGATGTGAATAAGAATCACCAACAACAGAGCCAACAGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGCTTCGACAAACAATTGTAAACAACAGCAGCGACGACAATGGCAGCAGAGCAGAAATTCGCGGCCCCTCGGAGATCTACAGAGTAGCAGCTGCAGCTTCGTAA

Protein sequence

MDVNKNHQQQSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSSDDNGSRAEIRGPSEIYRVAAAAS*
Homology
[Close]
BLAST of Chy2G045270 vs. ExPASy TrEMBL
Match: A0A0A0LWZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426950 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1  MDVNKNHQQQSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVN--NSSDDNGSRAEIRGPS 60
          MDVNKNHQQQ+QQKSKSNNDTGRENEAMDPTTKLL+RQ IVN     DDNG RAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

[Close]
BLAST of Chy2G045270 vs. ExPASy TrEMBL
Match: A0A5D3DYW2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002160 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.2e-09
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  MDVNKNHQQ-----QSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSSDDNGSRAEIR 60
          MDVNK+H++     Q QQKSKSN+D+G ENEAMDPTTKLL+RQ IV    ++NG  +E R
Sbjct: 1  MDVNKSHEEHNQPLQQQQKSKSNDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGSETR 60

[Close]
BLAST of Chy2G045270 vs. ExPASy TrEMBL
Match: A0A5A7UX55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005260 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.2e-09
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  MDVNKNHQQ-----QSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSSDDNGSRAEIR 60
          MDVNK+H++     Q QQKSKSN+D+G ENEAMDPTTKLL+RQ IV    ++NG  +E R
Sbjct: 5  MDVNKSHEEHNQPLQQQQKSKSNDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGSETR 64

[Close]
BLAST of Chy2G045270 vs. NCBI nr
Match: KGN65494.1 (hypothetical protein Csa_019946 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.35e-25
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1  MDVNKNHQQQSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSS--DDNGSRAEIRGPS 60
          MDVNKNHQQQ+QQKSKSNNDTGRENEAMDPTTKLL+RQ IVN     DDNG RAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

[Close]
BLAST of Chy2G045270 vs. NCBI nr
Match: TYK28569.1 (hypothetical protein E5676_scaffold629G002160 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.20e-13
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  MDVNKNHQQ-----QSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSSDDNGSRAEIR 60
          MDVNK+H++     Q QQKSKSN+D+G ENEAMDPTTKLL+RQ IV    ++NG  +E R
Sbjct: 1  MDVNKSHEEHNQPLQQQQKSKSNDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGSETR 60

[Close]
BLAST of Chy2G045270 vs. NCBI nr
Match: KAA0058205.1 (hypothetical protein E6C27_scaffold274G005260 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.43e-13
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  MDVNKNHQQ-----QSQQKSKSNNDTGRENEAMDPTTKLLLRQTIVNNSSDDNGSRAEIR 60
          MDVNK+H++     Q QQKSKSN+D+G ENEAMDPTTKLL+RQ IV    ++NG  +E R
Sbjct: 5  MDVNKSHEEHNQPLQQQQKSKSNDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGSETR 64

The following BLAST results are available for this feature:
BLAST of Chy2G045270 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G045270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWZ41.4e-1783.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426950 PE=4 SV=1[more]
A0A5D3DYW29.2e-0958.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UX559.2e-0958.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy2G045270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65494.15.35e-2583.87hypothetical protein Csa_019946 [Cucumis sativus][more]
TYK28569.12.20e-1358.46hypothetical protein E5676_scaffold629G002160 [Cucumis melo var. makuwa][more]
KAA0058205.12.43e-1358.46hypothetical protein E6C27_scaffold274G005260 [Cucumis melo var. makuwa][more]
BLAST of Chy2G045270 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G045270.1Chy2G045270.1mRNA