Chy2G045110 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G045110
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Isocitrate dehydrogenase [NADP]
Location	chrH02: 26554908 .. 26555090 (+)
RNA-Seq Expression	Chy2G045110
Synteny	Chy2G045110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTATTGTCTTCAAAGAACCGATTCTTCGCAGAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATTTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTGCTACTGATACAGTCATCAGACGACCTGGGAAATTGAAATTTGTTTTTGAGGGGCAGGGGACGTAA

mRNA sequence

ATGAATGGTATTGTCTTCAAAGAACCGATTCTTCGCAGAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATTTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTGCTACTGATACAGTCATCAGACGACCTGGGAAATTGAAATTTGTTTTTGAGGGGCAGGGGACGTAA

Coding sequence (CDS)

ATGAATGGTATTGTCTTCAAAGAACCGATTCTTCGCAGAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATTTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTGCTACTGATACAGTCATCAGACGACCTGGGAAATTGAAATTTGTTTTTGAGGGGCAGGGGACGTAA

Protein sequence

MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT*

Homology

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BLAST of Chy2G045110 vs. ExPASy Swiss-Prot
Match: Q9SLK0 (Peroxisomal isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana OX=3702 GN=ICDH PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.2e-22
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPI+ RN+PRLVPGWTKPICIGRHAFGDQYR ATD ++  PGKLK VFE  G+
Sbjct: 105 LNGTVFREPIICRNIPRLVPGWTKPICIGRHAFGDQYR-ATDLIVNEPGKLKLVFEPSGS 163

[Close]

BLAST of Chy2G045110 vs. ExPASy Swiss-Prot
Match: Q40345 (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.1e-22
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF--EGQ 60
           +NG VF+EPI+ +N+PRL+PGWTKPICIGRHAFGDQYR ATD+VI+ PGKLK VF  EGQ
Sbjct: 126 LNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYR-ATDSVIKGPGKLKLVFVPEGQ 185

[Close]

BLAST of Chy2G045110 vs. ExPASy Swiss-Prot
Match: P50218 (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-21
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYR ATDTVI+  GKLK VF  +GT
Sbjct: 105 LNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYR-ATDTVIQGAGKLKLVFVPEGT 163

[Close]

BLAST of Chy2G045110 vs. ExPASy Swiss-Prot
Match: P50217 (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum OX=4113 GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYR ATDTVI+  GKLK VF  +G+
Sbjct: 105 LNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYR-ATDTVIKGAGKLKLVFVPEGS 163

[Close]

BLAST of Chy2G045110 vs. ExPASy Swiss-Prot
Match: Q9SRZ6 (Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana OX=3702 GN=CICDH PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.9e-21
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ 59
           +NG VF+EPI+ +NVP+LVPGWTKPICIGRHAFGDQYR ATD VI+ PGKL   FEG+
Sbjct: 105 LNGTVFREPIICKNVPKLVPGWTKPICIGRHAFGDQYR-ATDAVIKGPGKLTMTFEGK 161

[Close]

BLAST of Chy2G045110 vs. ExPASy TrEMBL
Match: A0A0A0KRB4 (Isocitrate dehydrogenase [NADP] OS=Cucumis sativus OX=3659 GN=Csa_5G346550 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVIR PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYR-ATDTVIRGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. ExPASy TrEMBL
Match: Q8RW69 (Isocitrate dehydrogenase [NADP] OS=Cucumis sativus OX=3659 GN=IDH PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVIR PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYR-ATDTVIRGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. ExPASy TrEMBL
Match: A0A1S4E429 (Isocitrate dehydrogenase [NADP] OS=Cucumis melo OX=3656 GN=LOC103501355 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYR-ATDTVIKGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. ExPASy TrEMBL
Match: A0A6J1FJA0 (Isocitrate dehydrogenase [NADP] OS=Cucurbita moschata OX=3662 GN=LOC111444771 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYR-ATDTVIKGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. ExPASy TrEMBL
Match: A0A5A7VEU1 (Isocitrate dehydrogenase [NADP] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00180 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYR-ATDTVIKGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. NCBI nr
Match: NP_001295854.1 (cytosolic isocitrate dehydrogenase [Cucumis sativus] >CAD24779.1 isocitrate dehydrogenase [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 1.42e-26
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRA-TDTVIRGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. NCBI nr
Match: XP_011655148.1 (cytosolic isocitrate dehydrogenase isoform X2 [Cucumis sativus] >XP_031740811.1 cytosolic isocitrate dehydrogenase isoform X2 [Cucumis sativus] >KAE8648364.1 hypothetical protein Csa_023086 [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 1.42e-26
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRA-TDTVIRGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. NCBI nr
Match: XP_031740810.1 (cytosolic isocitrate dehydrogenase isoform X1 [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 1.46e-26
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRA-TDTVIRGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. NCBI nr
Match: KAG1367693.1 (putative Isocitrate dehydrogenase [NADP] [Cocos nucifera])

HSP 1 Score: 104 bits (260), Expect = 3.60e-26
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ 58
          +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYRA TDTVI+ PGKLK VFEG+
Sbjct: 27 LNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRA-TDTVIKGPGKLKLVFEGK 83

[Close]

BLAST of Chy2G045110 vs. NCBI nr
Match: KAG6579052.1 (Cytosolic isocitrate dehydrogenase [NADP], partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108 bits (270), Expect = 3.84e-26
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVI+ PGKLK VFEGQ T
Sbjct: 105 LNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRA-TDTVIKGPGKLKLVFEGQET 163

[Close]

BLAST of Chy2G045110 vs. TAIR 10
Match: AT1G54340.1 (isocitrate dehydrogenase )

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-23
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT 60
           +NG VF+EPI+ RN+PRLVPGWTKPICIGRHAFGDQYR ATD ++  PGKLK VFE  G+
Sbjct: 105 LNGTVFREPIICRNIPRLVPGWTKPICIGRHAFGDQYR-ATDLIVNEPGKLKLVFEPSGS 163

[Close]

BLAST of Chy2G045110 vs. TAIR 10
Match: AT1G65930.1 (cytosolic NADP+-dependent isocitrate dehydrogenase )

HSP 1 Score: 100.1 bits (248), Expect = 6.3e-22
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ 59
           +NG VF+EPI+ +NVP+LVPGWTKPICIGRHAFGDQYR ATD VI+ PGKL   FEG+
Sbjct: 105 LNGTVFREPIICKNVPKLVPGWTKPICIGRHAFGDQYR-ATDAVIKGPGKLTMTFEGK 161

[Close]

BLAST of Chy2G045110 vs. TAIR 10
Match: AT5G14590.1 (Isocitrate/isopropylmalate dehydrogenase family protein )

HSP 1 Score: 96.3 bits (238), Expect = 9.1e-21
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF 56
           ++G VF+EPI+  N+PRLVPGW KPICIGRHAFGDQYR ATDTVI+ PGKLK VF
Sbjct: 175 LDGTVFREPIMCSNIPRLVPGWEKPICIGRHAFGDQYR-ATDTVIKGPGKLKMVF 228

The following BLAST results are available for this feature:

BLAST of Chy2G045110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLK0	6.2e-22	73.33	Peroxisomal isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana OX=3702 GN=I...	[more]
Q40345	8.1e-22	75.41	Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa OX=...	[more]
P50218	2.3e-21	75.00	Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P50217	5.2e-21	73.33	Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum OX=4113 GN=ICDH-1 PE=2 SV=1	[more]
Q9SRZ6	8.9e-21	74.14	Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana OX=3702 GN=CIC...	[more]

BLAST of Chy2G045110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRB4	1.1e-21	85.00	Isocitrate dehydrogenase [NADP] OS=Cucumis sativus OX=3659 GN=Csa_5G346550 PE=3 ...	[more]
Q8RW69	1.1e-21	85.00	Isocitrate dehydrogenase [NADP] OS=Cucumis sativus OX=3659 GN=IDH PE=2 SV=1	[more]
A0A1S4E429	2.4e-21	83.33	Isocitrate dehydrogenase [NADP] OS=Cucumis melo OX=3656 GN=LOC103501355 PE=3 SV=...	[more]
A0A6J1FJA0	2.4e-21	83.33	Isocitrate dehydrogenase [NADP] OS=Cucurbita moschata OX=3662 GN=LOC111444771 PE...	[more]
A0A5A7VEU1	2.4e-21	83.33	Isocitrate dehydrogenase [NADP] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Chy2G045110 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001295854.1	1.42e-26	85.00	cytosolic isocitrate dehydrogenase [Cucumis sativus] >CAD24779.1 isocitrate dehy...	[more]
XP_011655148.1	1.42e-26	85.00	cytosolic isocitrate dehydrogenase isoform X2 [Cucumis sativus] >XP_031740811.1 ...	[more]
XP_031740810.1	1.46e-26	85.00	cytosolic isocitrate dehydrogenase isoform X1 [Cucumis sativus]	[more]
KAG1367693.1	3.60e-26	79.31	putative Isocitrate dehydrogenase [NADP] [Cocos nucifera]	[more]
KAG6579052.1	3.84e-26	83.33	Cytosolic isocitrate dehydrogenase [NADP], partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Chy2G045110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54340.1	4.4e-23	73.33	isocitrate dehydrogenase	[more]
AT1G65930.1	6.3e-22	74.14	cytosolic NADP+-dependent isocitrate dehydrogenase	[more]
AT5G14590.1	9.1e-21	76.36	Isocitrate/isopropylmalate dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.718.10	Isopropylmalate Dehydrogenase	coord: 1..60 e-value: 7.9E-16 score: 59.6
None	No IPR available	PANTHER	PTHR11822:SF30	PEROXISOMAL ISOCITRATE DEHYDROGENASE [NADP]	coord: 1..59
None	No IPR available	SUPERFAMILY	53659	Isocitrate/Isopropylmalate dehydrogenase-like	coord: 1..56
IPR004790	Isocitrate dehydrogenase NADP-dependent	PANTHER	PTHR11822	NADP-SPECIFIC ISOCITRATE DEHYDROGENASE	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G045110.1	Chy2G045110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006102	isocitrate metabolic process
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0004450	isocitrate dehydrogenase (NADP+) activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0051287	NAD binding