Chy2G044650 (gene) Cucumber (hystrix) v1

Overview
NameChy2G044650
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLPS-induced tumor necrosis factor alpha factor
LocationchrH02: 26147644 .. 26148941 (+)
RNA-Seq ExpressionChy2G044650
SyntenyChy2G044650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATGTTGGGCTTGCTTTGAAGATGGTGGCTGATTGTGCTCCGGCAGTTGCGACGGCTTTATATGTGGTTATGACGGCTGCACCAGTGCTGACCCCTGTTGTAGCCCCTGTTATGGTTGCAGCTACCGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGAAATTTGATGATTACATTGAAATTATGTGTTGGGGAAAACTAAGGTTTTTAATGAAATTGGTTTAACTATTACATGTCTTGTTTTATGATGAATCAAAATAGTTAATTTAGTTAAAATAAGCTCAGTTCAACTATTACTTACTATCTTAATTTGAATTTCATTTCTTTAACTGATCTTGATACATTGTAGTCAAGTTTTTCATTAATCAAGGGACTTTTTATACCTATGATTAAAAGTGGAAGGATCAAAATAGTTAATTTAGTCAAAATTAACTCGGTTCAACTAGCGTTTGTATGTTCATGTAACAATAGCTTTTTAGTTCAAAATTCTCCACCACAATCCAAAACAAAAGGTTAATTTAAAACCTCCTATTAAGAAATTGGGGATCAAAGGGATACTTTTTCTTTTGAATTATTATATTTGATTTTAAGAGTGATTTTAAAATTATGAATTACTAAAAAATGGTTTTTATTTAATAATTATTTAAGTAATATAAAAATAAAAATTTGAAGAACCATATATTGTATGAAAAAAACGGAAGCGTTTGGTTGTATACTTTATTTTTTAAAATATACATAGAAAGACATCGATAAGACTTTAAATCAACGTCAATATTATTAATAGACAATGATATAATTCAAATAATATTATATGAATGTATATCATATGATATAAAATCTCTTGTTATATTTTATAAATATTTTAGACAATTTTATCATTTACAATAATTCGAATAATACGAACATTTATTTTCAATTTTGGGTTACCATGTTTTCTCTACCTAATATAATTAAAATTAAACTTCAAAAGATCATAGGAGTGCCTAATAATTGGGAACTAAAATATAAGTAAACATAAAGTACACCACTATTCATATCAAAAAGAATTTATATGATATATTTATTATTTGACACGTTATTAATTATTAAATATTGATGTTAAAGTTCTCACATAATTCTTTAAATAAGAAAATTGAGATAGACATTGAATAGACCATTTTCCTCCAAATTGAAATTAAAGTTGGGATACAAAATTGAAGAAAACAATAAAATTGAAGATTTCAGAATCCAAAGTTCATTGGATTCTTTTGGAAACGAAAATAAATCGCCGCTATTAAGTAATATATAA

mRNA sequence

ATGGGGGATGTTGGGCTTGCTTTGAAGATGGTGGCTGATTGTGCTCCGGCAGTTGCGACGGCTTTATATGTGGTTATGACGGCTGCACCAGTGCTGACCCCTGTTGTAGCCCCTGTTATGGTTGCAGCTACCGTTGTTACGTCGGTCACCGGCACATTGAATAGACCATTTTCCTCCAAATTGAAATTAAAGTTGGGATACAAAATTGAAGAAAACAATAAAATTGAAGATTTCAGAATCCAAAGTTCATTGGATTCTTTTGGAAACGAAAATAAATCGCCGCTATTAAGTAATATATAA

Coding sequence (CDS)

ATGGGGGATGTTGGGCTTGCTTTGAAGATGGTGGCTGATTGTGCTCCGGCAGTTGCGACGGCTTTATATGTGGTTATGACGGCTGCACCAGTGCTGACCCCTGTTGTAGCCCCTGTTATGGTTGCAGCTACCGTTGTTACGTCGGTCACCGGCACATTGAATAGACCATTTTCCTCCAAATTGAAATTAAAGTTGGGATACAAAATTGAAGAAAACAATAAAATTGAAGATTTCAGAATCCAAAGTTCATTGGATTCTTTTGGAAACGAAAATAAATCGCCGCTATTAAGTAATATATAA

Protein sequence

MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTLNRPFSSKLKLKLGYKIEENNKIEDFRIQSSLDSFGNENKSPLLSNI*
Homology
BLAST of Chy2G044650 vs. ExPASy TrEMBL
Match: A0A0A0LZP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-10
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 54
          MGD GLALK+ ADCAPAVATA  VVMT AP L PVVAPVMVAATVVTSVTG L
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVL 71

BLAST of Chy2G044650 vs. ExPASy TrEMBL
Match: A0A5D3CE01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00920 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 54
          M DV  ALKM ADCAPAVAT   VVMT AP+LTPVVAPVMVAA VVTSVT  L
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVL 53

BLAST of Chy2G044650 vs. ExPASy TrEMBL
Match: A0A5D3BKI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00240 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 54
          MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM A TV TSVTG +
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVM 53

BLAST of Chy2G044650 vs. ExPASy TrEMBL
Match: A0A5A7UMM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00990 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 54
          MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM + TV TSVTG +
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVM 53

BLAST of Chy2G044650 vs. ExPASy TrEMBL
Match: A0A5D3DRF6 (LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00340 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-04
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 11  VADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 54
           +ADCAP VAT   VVMT AP+LTPVVAPVM AATV TS+TG +
Sbjct: 181 LADCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVM 223

BLAST of Chy2G044650 vs. NCBI nr
Match: KGN65426.1 (hypothetical protein Csa_019847 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.73e-14
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 53
          MGD GLALK+ ADCAPAVATA  VVMT AP L PVVAPVMVAATVVTSVTG L
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVL 71

BLAST of Chy2G044650 vs. NCBI nr
Match: TYK09492.1 (hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.33e-11
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 53
          M DV  ALKM ADCAPAVAT   VVMT AP+LTPVVAPVMVAA VVTSVT  L
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVL 53

BLAST of Chy2G044650 vs. NCBI nr
Match: TYJ99647.1 (hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.01e-09
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 53
          MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM A TV TSVTG +
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVM 53

BLAST of Chy2G044650 vs. NCBI nr
Match: KAA0054811.1 (hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.42e-08
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 53
          MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM + TV TSVTG +
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVM 53

BLAST of Chy2G044650 vs. NCBI nr
Match: KAA0068093.1 (LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26075.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 5.98e-06
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 9   KMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL 53
           + +ADCAP VAT   VVMT AP+LTPVVAPVM AATV TS+TG +
Sbjct: 179 ERLADCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVM 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LZP77.1e-1083.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1[more]
A0A5D3CE011.1e-0777.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BKI71.1e-0567.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UMM62.4e-0566.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRF64.4e-0472.09LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
KGN65426.12.73e-1483.02hypothetical protein Csa_019847 [Cucumis sativus][more]
TYK09492.11.33e-1177.36hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa][more]
TYJ99647.15.01e-0967.92hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa][more]
KAA0054811.11.42e-0866.04hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa][more]
KAA0068093.15.98e-0668.89LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G044650.1Chy2G044650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane