Chy2G042980 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G042980
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	chrH02: 24337954 .. 24339289 (+)
RNA-Seq Expression	Chy2G042980
Synteny	Chy2G042980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGCATTGAACCCATTGTCCCCGATGCTTGCTGTATTTCTCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGCTCTTCTTTTGGTAACTATTTCCCTCTTCTTCTTTTTTTTTTCTATTCATTTTTGCCCTACGTACCTCGATCTGATTGCAAATCCGAATGTTCTGCTTTCGATGTATTTGTTTAATTGATAGAGGTGCAAGTTGAAAGGACAGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGTACGTTGTTGGGGATTTGGAATACTGAATTCCGTATATTAATGTATTATATATCTCTGTGTGTGTGTGCGTGTAATGTGTGTGTTGAATTGGAAACTGAAACTTATCAAAAATTTGTTCAATTATTCTTTATTTGGTTTCAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGGTATTCCCATCTTCTTTTGTTAACTGTTTCGGCTTTAGTTTTTGAAATTCGAACTTAGGTCCCGTTTATTCACCCAAAGGTAATTAATCAACAGTAATGTAAAAAGCGGGTCAGTTCATTATGTTTGTTGTTATCTACCGTGTTTTGTAATCAGAATGAACTCTAGATGGTAATCAAAATGAACTATAGCTGGTAATAAAAATCCAAGAAAGATGCTAAATCTGATTATGCTTGAAAATAATGAATGACACACTACTTTTTATCCTTTTTATCTCTCACATTTACCGTTAGTATTAGAAAAGGTAAAGGTAAAATAACAAATTTTAATTTTAATTTTAATTAATAAACACAATTAGAAACAATTCAATTTAATTGCGATTCCGACAAATTACATTCAATGCATCAAATGGAATCCCAATATGATTACACTCATTTTCATTATGGAATAGTAAAGGTGGCCTTAATGGATTTAATTTCTTGTTATCCACTTGTTTCACGTGGATTTAATTTCTTGTTATCCACCTTTTTCACGTTAAAGAAAAAAAAAATGAAAATCATTCATGAAAAACAAGTATAATCTTCAAAAAACCAAATTGGTTGATCAAATAAAACAATTATTTCTCTGTTTGATCTGTTGTTTGTGACATTTGAGTATTAATGAGTTATATGTTGGTTCCCTTATGCAGCTGCATTTTGAGGAATTGAGATGTCCCGTAGAAGAATAA

mRNA sequence

ATGTCTCGCATTGAACCCATTGTCCCCGATGCTTGCTGTATTTCTCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGCTCTTCTTTTGAGGTGCAAGTTGAAAGGACAGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGAGGAATTGAGATGTCCCGTAGAAGAATAA

Coding sequence (CDS)

ATGTCTCGCATTGAACCCATTGTCCCCGATGCTTGCTGTATTTCTCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGCTCTTCTTTTGAGGTGCAAGTTGAAAGGACAGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGAGGAATTGAGATGTCCCGTAGAAGAATAA

Protein sequence

MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFEELRCPVEE*

Homology

[Close]

BLAST of Chy2G042980 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHF 121
            + KL+DD + +Q  GIR+  Q+ F
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTF 136

[Close]

BLAST of Chy2G042980 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 26/88 (29.55%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           L     KL +D+ +++ +GIR+ D++ F
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSF 125

[Close]

BLAST of Chy2G042980 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-05
Identity = 26/88 (29.55%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           L     KL +D+ +++ +GIR+ D++ F
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSF 116

[Close]

BLAST of Chy2G042980 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 26/88 (29.55%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           L     KL +D+ +++ +GIR+ D++ F
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSF 116

[Close]

BLAST of Chy2G042980 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.7e-68
Identity = 124/129 (96.12%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPD+CCISPRF SNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 EELRCPVEE 130
            ELRCP+EE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of Chy2G042980 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 EELRCPVEE 130
            ELRCPVEE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Chy2G042980 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 EELRCPVEE 130
            ELRCPVEE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Chy2G042980 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 EELRCPVEE 130
             L C   E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of Chy2G042980 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-50
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           M RIEP +PD+CCISPRFRSNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

[Close]

BLAST of Chy2G042980 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 267 bits (682), Expect = 3.64e-90
Identity = 124/129 (96.12%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPD+CCISPRF SNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 EELRCPVEE 129
            ELRCP+EE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of Chy2G042980 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (681), Expect = 5.72e-90
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 EELRCPVEE 129
            ELRCPVEE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Chy2G042980 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 246 bits (628), Expect = 1.15e-81
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 EELRCPVEE 129
             L C   E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of Chy2G042980 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 226 bits (576), Expect = 3.98e-74
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSRIEP+VPD+CCISPRFRSNSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQL 118
           AVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL+DDKSRI+HFGIRDGDQ+
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQI 118

[Close]

BLAST of Chy2G042980 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208 bits (529), Expect = 6.88e-67
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSRIEP +PD+CCISPRFRSNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

[Close]

BLAST of Chy2G042980 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-23
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     IS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           WPHVWG FCL Y+  +L+++   +  FGI+DGDQL F
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRF 120

[Close]

BLAST of Chy2G042980 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 14  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVR 73
           I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 74  DAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
            AVE VF    +      ISW HVWGHFCLCY+  +L++DK+ I++ G+ DGDQLHF
Sbjct: 81  RAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHF 135

[Close]

BLAST of Chy2G042980 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-21
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    IS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFE 122
           W HVWGHFCLC+   KL+ D   I ++G++DGD++ F+
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFK 102

[Close]

BLAST of Chy2G042980 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 32  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHF 91
           +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 92  CLCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           CL Y+  +L+++   +  FGI+DGDQL F
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRF 85

[Close]

BLAST of Chy2G042980 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHF 121
            + KL+DD + +Q  GIR+  Q+ F
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTF 136

The following BLAST results are available for this feature:

BLAST of Chy2G042980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	2.8e-11	42.35	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	2.9e-05	29.55	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	3.8e-05	29.55	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	5.0e-05	29.55	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Chy2G042980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94	5.7e-68	96.12	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	7.4e-68	96.12	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	7.4e-68	96.12	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3B9C0	1.0e-61	89.92	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	5.3e-50	79.17	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of Chy2G042980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655436.1	3.64e-90	96.12	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443964.1	5.72e-90	96.12	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_008443963.1	1.15e-81	89.92	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_038880358.1	3.98e-74	88.14	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_023531557.1	6.88e-67	80.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of Chy2G042980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	7.2e-23	49.48	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	2.7e-22	47.86	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	3.9e-21	47.96	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	2.0e-17	47.19	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	2.0e-12	42.35	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 37..121 e-value: 3.0E-24 score: 84.9
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 37..120 e-value: 1.45901E-37 score: 120.701
None	No IPR available	GENE3D	3.10.20.90		coord: 33..126 e-value: 4.3E-30 score: 105.5
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 7..120
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 7..120
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G042980.1	Chy2G042980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex