Chy2G042780 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGTCAACACACTACACACAAACCTCTATCTCTACTAACCCCTTTTTTTCCCTTTCAATTTAACTCAAAATCCTCTTCTCTTTCTTCTCCTTCACAAATTCGTTCAAAAACAAATATGGCTTTAAAACACTCTCTCCTTCTCATTCTTCCTCTCTTATTTTGCCTTTTTCTCTCTCCCCCCACATCAGGTAAAACCCACCTCTTTACTCATTAATCATTCTTAATCCAAACTTAGAGACACAGTTGTATATATTTATTTGTGTAATATCAATCCAATTTGTTTGATATGTCAGGGCATGAACAGAATTTTTCTTCTTCTTCTTCTTCTTCTTCTAAGCAGAAGGAATTGGTAATTGGGTCAAGACCACCACAGTGCTTTAATAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAATAATAATAGTAATGATGATGATCATCTTGTTGTTTCGAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAACATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAGCCTTGA TGTCAACACACTACACACAAACCTCTATCTCTACTAACCCCTTTTTTTCCCTTTCAATTTAACTCAAAATCCTCTTCTCTTTCTTCTCCTTCACAAATTCGTTCAAAAACAAATATGGCTTTAAAACACTCTCTCCTTCTCATTCTTCCTCTCTTATTTTGCCTTTTTCTCTCTCCCCCCACATCAGGGCATGAACAGAATTTTTCTTCTTCTTCTTCTTCTTCTTCTAAGCAGAAGGAATTGGTAATTGGGTCAAGACCACCACAGTGCTTTAATAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAATAATAATAGTAATGATGATGATCATCTTGTTGTTTCGAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAACATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAGCCTTGA TGTCAACACACTACACACAAACCTCTATCTCTACTAACCCCTTTTTTTCCCTTTCAATTTAACTCAAAATCCTCTTCTCTTTCTTCTCCTTCACAAATTCGTTCAAAAACAAATATGGCTTTAAAACACTCTCTCCTTCTCATTCTTCCTCTCTTATTTTGCCTTTTTCTCTCTCCCCCCACATCAGGGCATGAACAGAATTTTTCTTCTTCTTCTTCTTCTTCTTCTAAGCAGAAGGAATTGGTAATTGGGTCAAGACCACCACAGTGCTTTAATAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAATAATAATAGTAATGATGATGATCATCTTGTTGTTTCGAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAACATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAGCCTTGA CQHTTHKPLSLLTPFFPFQFNSKSSSLSSPSQIRSKTNMALKHSLLLILPLLFCLFLSPPTSGHEQNFSSSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALVISQRHNNNSNDDDHLVVSNLEADLLPVPKHDAYYLLSWKCKCKDKYFQP* Homology
BLAST of Chy2G042780 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06 Identity = 28/86 (32.56%), Postives = 40/86 (46.51%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05 Identity = 33/120 (27.50%), Postives = 53/120 (44.17%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy TrEMBL
Match: A0A1S3B8V6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443 PE=3 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44 Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 3.7e-34 Identity = 82/116 (70.69%), Postives = 89/116 (76.72%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy TrEMBL
Match: A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 6.4e-34 Identity = 82/116 (70.69%), Postives = 89/116 (76.72%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32 Identity = 89/152 (58.55%), Postives = 102/152 (67.11%), Query Frame = 0
BLAST of Chy2G042780 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32 Identity = 79/116 (68.10%), Postives = 88/116 (75.86%), Query Frame = 0
BLAST of Chy2G042780 vs. NCBI nr
Match: KAE8653105.1 (hypothetical protein Csa_020083, partial [Cucumis sativus]) HSP 1 Score: 278 bits (712), Expect = 6.98e-94 Identity = 144/160 (90.00%), Postives = 146/160 (91.25%), Query Frame = 0
BLAST of Chy2G042780 vs. NCBI nr
Match: XP_031736064.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus]) HSP 1 Score: 230 bits (586), Expect = 3.36e-75 Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 0
BLAST of Chy2G042780 vs. NCBI nr
Match: XP_038879118.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida]) HSP 1 Score: 189 bits (479), Expect = 6.96e-59 Identity = 99/127 (77.95%), Postives = 103/127 (81.10%), Query Frame = 0
BLAST of Chy2G042780 vs. NCBI nr
Match: XP_008443990.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo]) HSP 1 Score: 187 bits (474), Expect = 3.32e-58 Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 0
BLAST of Chy2G042780 vs. NCBI nr
Match: XP_023531007.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156 bits (395), Expect = 1.21e-45 Identity = 90/149 (60.40%), Postives = 103/149 (69.13%), Query Frame = 0
BLAST of Chy2G042780 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 7.8e-08 Identity = 28/86 (32.56%), Postives = 40/86 (46.51%), Query Frame = 0
BLAST of Chy2G042780 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 1.9e-06 Identity = 33/120 (27.50%), Postives = 53/120 (44.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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