Chy2G042510 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G042510
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 23639291 .. 23639464 (-)
RNA-Seq Expression	Chy2G042510
Synteny	Chy2G042510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCACAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

mRNA sequence

ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCACAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

Coding sequence (CDS)

ATGGGAGCAAAGAGGCCACTGAAGGAGAAGAAAGAGACCCCTGTCGCCATTAAACCTCAGTGGAGTTTAGGGCCCATCTCCTCAGCGGCACAACCTACCAAGCACAAGAGTGGGTTCAAGAAGAGAGAGACTGAAAAAAGCAAACCTAAACCATTAAAGGGGATGAAGAAGTAG

Protein sequence

MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK*

Homology

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BLAST of Chy2G042510 vs. ExPASy TrEMBL
Match: A0A5A7TXU3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00030 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 58
          MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK
Sbjct: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

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BLAST of Chy2G042510 vs. ExPASy TrEMBL
Match: A0A0A0LWE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320330 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 58
          MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK
Sbjct: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

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BLAST of Chy2G042510 vs. NCBI nr
Match: KAA0046786.1 (hypothetical protein E6C27_scaffold216G00760 [Cucumis melo var. makuwa] >KGN65314.1 hypothetical protein Csa_019590 [Cucumis sativus] >TYK29661.1 hypothetical protein E5676_scaffold64G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 9.01e-31
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57
          MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK
Sbjct: 1  MGAKRPLKEKKETPVAIKPQWSLGPISSAAQPTKHKSGFKKRETEKSKPKPLKGMKK 57

[Close]

BLAST of Chy2G042510 vs. NCBI nr
Match: BAT76368.1 (hypothetical protein VIGAN_01435600 [Vigna angularis var. angularis])

HSP 1 Score: 48.9 bits (115), Expect = 3.63e-05
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 11 KETPVA--IKPQWSLGPISSAAQPTKHKSGFKKR 42
          KETP+   IK QWSLGPISS AQPTKHKS F KR
Sbjct: 56 KETPLVLTIKLQWSLGPISSTAQPTKHKSVFSKR 89

The following BLAST results are available for this feature:

BLAST of Chy2G042510 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G042510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXU3	6.1e-22	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWE6	6.1e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320330 PE=4 SV=1	[more]

BLAST of Chy2G042510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046786.1	9.01e-31	100.00	hypothetical protein E6C27_scaffold216G00760 [Cucumis melo var. makuwa] >KGN6531...	[more]
BAT76368.1	3.63e-05	76.47	hypothetical protein VIGAN_01435600 [Vigna angularis var. angularis]	[more]

BLAST of Chy2G042510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G042510.1	Chy2G042510.1	mRNA