Chy2G042300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G042300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	PMD domain-containing protein
Location	chrH02: 23289282 .. 23290284 (+)
RNA-Seq Expression	Chy2G042300
Synteny	Chy2G042300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCTACCCTCGAGAAGGACTTGACGGAGCATAAAGAAGAGAGTGACAATAGCAAAAGTAATCGTCATTGGAAAAGACCTTTGAAGAAAGTGAAGGTATCAGATGATGACTCTTGCGGAAGGGGCTTAAGTGCTATAGGAATTCTTGATGTCCCACCACTGGTTGGCATATTTTACTTCTTTAAAATTTTTTTCTTTTATTGCTCATCTTCTTTGTGAGTGATTTATCCATTACTTATTTCTGCAGTCACCTTTGGACGATTATCTTGAAGGACTTATAGATGTAGACAGTGATGACTCTCTAACAGGACCTCATATAGCTGATACAACCATTGAGGAAGTTGGTATTTTGAAGACACCAGCTGTAAAATAAGCCAAACAATCCTTACGTCCATCTGCTCTTCTCGAGGAGATTCGTCAAGACAAGATGAAAGTGGGTGGCAAAGACAACGAGAATCCTCCATCTAGAGGAGGTGACTGTCCTACAGTGCCTTCAGCGAAGGTTACATCCATGCATGCTCCTCTCAAGATTTATGAGCCACCTCTAAGCACGTCTATGAAACGGACAACAGAACACCCTGAGCCTTCTCAGTGGGTTGGTGAAAATGTAGTTTCAAACTTCTTTAAGAAAACAGCCCTATGTATGTAGGGGGACATTCAAGACAAGATCATGCGCATTCCTTTTGAATATATCCTAAGACTTAGGCCAAAAGTAGCAACAATTCTCTTAGGCATTGCGAAGATTCATGCAGACGGCTTGACTCCTCTTGAAGAATATTTGAATAGTTGCCTTAAGAGGGTAGACAGTTTCAACAATGTACAATCTTCATATTCTGCACAGTTGTTGTCGACAGATAAGACTCGTTAGTTAGAGGAGAAAAGTTCTGCTATTAAGGAAGCTTTAACTTTGACGGACCAACTACGAGGAGATGTTGAAGTCATTCATGAGAGGGCTGTAAAGTTATCTTTGGAAAAGAATGAACTAGAGAGCAGACTTTAG

mRNA sequence

ATGACTCCTACCCTCGAGAAGGACTTGACGGAGCATAAAGAAGAGAGTGACAATAGCAAAAGTAATCGTCATTGGAAAAGACCTTTGAAGAAAGTGAAGTCACCTTTGGACGATTATCTTGAAGGACTTATAGATGTAGACAGTGATGACTCTCTAACAGGACCTCATATAGCTGATACAACCATTGAGGAAGTTGGTATTTTGAAGACACCAGCTGTAAAATAAGCCAAACAATCCTTACGTCCATCTGCTCTTCTCGAGGAGATTCGTCAAGACAAGATGAAAGTGGGAGAAAAACTTTAG

Coding sequence (CDS)

ATGACTCCTACCCTCGAGAAGGACTTGACGGAGCATAAAGAAGAGAGTGACAATAGCAAAAGTAATCGTCATTGGAAAAGACCTTTGAAGAAAGTGAAGTCACCTTTGGACGATTATCTTGAAGGACTTATAGATGTAGACAGTGATGACTCTCTAACAGGACCTCATATAGCTGATACAACCATTGAGGAAGTTGGTATTTTGAAGACACCAGCTGTAAAATAAGCCAAACAATCCTTACGTCCATCTGCTCTTCTCGAGGAGATTCGTCAAGACAAGATGAAAGTGGGAGAAAAACTTTAG

Protein sequence

MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEKL*

Homology

[Close]

BLAST of Chy2G042300 vs. ExPASy TrEMBL
Match: A0A5A7TUP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002650 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 65/93 (69.89%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADT 60
           MTPTLE+++ EHK+ESD++KS+RHWKRPLKK KSPL+++LEGLI++ SD+SLTGPH+ D+
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  TIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK 94
             EEVG  KTP  K AKQSLRPSALLEEIR+ K
Sbjct: 197 AFEEVGTSKTPVNKLAKQSLRPSALLEEIRRGK 229

[Close]

BLAST of Chy2G042300 vs. ExPASy TrEMBL
Match: A0A5A7V4F4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004890 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSL 60
           M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 100
           TGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ KM VG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of Chy2G042300 vs. ExPASy TrEMBL
Match: A0A5D3BRA8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00620 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSL 60
           M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 100
           TGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ KM VG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of Chy2G042300 vs. ExPASy TrEMBL
Match: A0A5D3BZM5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00430 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.4e-26
Identity = 61/99 (61.62%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADT 60
           M  TL++++ EHK+ESD+SKS+ HWKR LKK KSPL+ +LEGL+++D+D+SL GPH+ D+
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  TIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 100
           TIE VG  KTP  K A+QSLRPSAL EEIR+ KM +G K
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGK 359

[Close]

BLAST of Chy2G042300 vs. ExPASy TrEMBL
Match: A0A5D3BW91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001500 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 68/121 (56.20%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVK----------------------SPLDD 60
           M P L +++ EHK+ESD+SKS+RHWKRPLKK K                      SPL+D
Sbjct: 135 MAPNLGEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPSLSPLND 194

Query: 61  YLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGE 100
           +LEGLI+ DSD+SL GPH  D+  EEVG  KTP  K A+QSLRPSALLEEIR+ KM VGE
Sbjct: 195 HLEGLIEPDSDESLMGPHAVDSAFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGE 254

[Close]

BLAST of Chy2G042300 vs. NCBI nr
Match: KAA0044959.1 (hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 2.15e-36
Identity = 65/93 (69.89%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADT 60
           MTPTLE+++ EHK+ESD++KS+RHWKRPLKK KSPL+++LEGLI++ SD+SLTGPH+ D+
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  TIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK 93
             EEVG  KTP  K AKQSLRPSALLEEIR+ K
Sbjct: 197 AFEEVGTSKTPVNKLAKQSLRPSALLEEIRRGK 229

[Close]

BLAST of Chy2G042300 vs. NCBI nr
Match: KAA0053996.1 (hypothetical protein E6C27_scaffold318G00430 [Cucumis melo var. makuwa] >TYK20681.1 hypothetical protein E5676_scaffold480G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 2.69e-31
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADT 60
          MT TLE+ + EHK+ESD+SKS+RHWKRP +  +SPL+++LEGLI + SD+SL GPH  D+
Sbjct: 1  MTLTLEEVVKEHKDESDSSKSDRHWKRPKRSYQSPLNNHLEGLIALGSDESLIGPHTLDS 60

Query: 61 TIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 99
           IEEVG  KTP  K A+Q LRPSALLEEIR+ KMKV  K
Sbjct: 61 AIEEVGTSKTPVSKSAEQYLRPSALLEEIRRGKMKVEGK 99

[Close]

BLAST of Chy2G042300 vs. NCBI nr
Match: TYK02261.1 (hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 3.01e-31
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSL 60
           M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 99
           TGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ KM VG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of Chy2G042300 vs. NCBI nr
Match: KAA0060611.1 (hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 3.01e-31
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSL 60
           M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SL
Sbjct: 522 MAPNLEEEVKEHKDESDSSKSDLHWKRPLKRRYQVIIPTEESPLNDHLEGLIEPDSDESL 581

Query: 61  TGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 99
           TGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ KM VG K
Sbjct: 582 TGPHAVDSTFEEVGTSKTPVNKPAEQSLRPSALLEEIRRGKMTVGRK 628

[Close]

BLAST of Chy2G042300 vs. NCBI nr
Match: KAA0031667.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 4.56e-31
Identity = 61/99 (61.62%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADT 60
           M  TL++++ EHK+ESD+SKS+ HWKR LKK KSPL+ +LEGL+++D+D+SL GPH+ D+
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  TIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK 99
           TIE VG  KTP  K A+QSLRPSAL EEIR+ KM +G K
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGK 359

The following BLAST results are available for this feature:

BLAST of Chy2G042300 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G042300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUP1	2.0e-28	69.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V4F4	1.9e-26	62.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BRA8	1.9e-26	62.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BZM5	5.4e-26	61.62	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BW91	3.5e-25	56.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy2G042300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044959.1	2.15e-36	69.89	hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa]	[more]
KAA0053996.1	2.69e-31	63.64	hypothetical protein E6C27_scaffold318G00430 [Cucumis melo var. makuwa] >TYK2068...	[more]
TYK02261.1	3.01e-31	62.62	hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]	[more]
KAA0060611.1	3.01e-31	62.62	hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]	[more]
KAA0031667.1	4.56e-31	61.62	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative m...	[more]

BLAST of Chy2G042300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G042300.1	Chy2G042300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane