Chy2G042070 (gene) Cucumber (hystrix) v1

Overview
NameChy2G042070
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
LocationchrH02: 22838303 .. 22838524 (+)
RNA-Seq ExpressionChy2G042070
SyntenyChy2G042070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTTGTCAAATTATAAACGACCCAAATATTCGTTGGGACAATGTGCTCAAGATCCATGGAGAATTTTATTATCTTTCTCATTGGGAATGGTTAGAGCTCGCCGTTGCTAGAAATACGACGGTACTCAAGCGAGCTTCGCTATTTAATGCTGTGATGGCTTTCTTGTATACATATGTTCGCAATAGTGACATCGTTCGGGCTTTCTGTGAGGCATGA

mRNA sequence

ATGTTGGGTTGTCAAATTATAAACGACCCAAATATTCGTTGGGACAATGTGCTCAAGATCCATGGAGAATTTTATTATCTTTCTCATTGGGAATGGTTAGAGCTCGCCGTTGCTAGAAATACGACGGTACTCAAGCGAGCTTCGCTATTTAATGCTGTGATGGCTTTCTTGTATACATATGTTCGCAATAGTGACATCGTTCGGGCTTTCTGTGAGGCATGA

Coding sequence (CDS)

ATGTTGGGTTGTCAAATTATAAACGACCCAAATATTCGTTGGGACAATGTGCTCAAGATCCATGGAGAATTTTATTATCTTTCTCATTGGGAATGGTTAGAGCTCGCCGTTGCTAGAAATACGACGGTACTCAAGCGAGCTTCGCTATTTAATGCTGTGATGGCTTTCTTGTATACATATGTTCGCAATAGTGACATCGTTCGGGCTTTCTGTGAGGCATGA

Protein sequence

MLGCQIINDPNIRWDNVLKIHGEFYYLSHWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA*
Homology
BLAST of Chy2G042070 vs. ExPASy TrEMBL
Match: A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.8e-25
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LGCQ+I+D  IRW  VLK+HGEFYYLSH WEWLELAVARNT +LKR  LF+AVMA +YTY
Sbjct: 91  LGCQMISDSKIRWGTVLKVHGEFYYLSHYWEWLELAVARNTAILKRDRLFDAVMASMYTY 150

Query: 62  VRNSDIVRAFCEA 74
            RNSDIVRAFCEA
Sbjct: 151 DRNSDIVRAFCEA 163

BLAST of Chy2G042070 vs. ExPASy TrEMBL
Match: A0A5D3BB02 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00970 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LG ++I+D  IRW  VLK+HGEFYYLS HWEWLELAVARN T+LKRA LF+ VMA +YTY
Sbjct: 91  LGRRMISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTY 150

Query: 62  VRNSDIVRAFCEA 74
            RNSDIVRAFCEA
Sbjct: 151 DRNSDIVRAFCEA 163

BLAST of Chy2G042070 vs. ExPASy TrEMBL
Match: A0A5A7SST7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00660 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LG ++I+D  IRW  VLK+HGEFYYLS HWEWLELAVARN T+LKRA LF+ VMA +YTY
Sbjct: 200 LGRRMISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTY 259

Query: 62  VRNSDIVRAFCEA 74
            RNSDIVRAFCEA
Sbjct: 260 DRNSDIVRAFCEA 272

BLAST of Chy2G042070 vs. ExPASy TrEMBL
Match: A0A5D3C4B8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00020 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 6  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNS 65
          +I+D   RW  VLK+HGEFYYLSH WEWLEL VARNT +LK+A LF+ VMAFLYTY RNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 66 DIVRAFCEA 74
          D VRAFCEA
Sbjct: 61 DTVRAFCEA 69

BLAST of Chy2G042070 vs. ExPASy TrEMBL
Match: A0A5A7SM27 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00020 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 6  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNS 65
          +I+D   RW  VLK+HGEFYYLSH WEWLEL VA+NT +LK+A LF+ VMAFLYTY RNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 66 DIVRAFCEA 74
          D VRAFCEA
Sbjct: 61 DTVRAFCEA 69

BLAST of Chy2G042070 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 125 bits (313), Expect = 3.44e-31
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LG +IINDP IRW NVLK+HGEFYYL H WEWLEL VARNT VLKRASLFNAVMA LYTY
Sbjct: 91  LGRRIINDPKIRWGNVLKVHGEFYYLPHYWEWLELVVARNTAVLKRASLFNAVMASLYTY 150

Query: 62  VRNSDIVRAFCEA 73
            RNSDI RAFCEA
Sbjct: 151 DRNSDIDRAFCEA 163

BLAST of Chy2G042070 vs. NCBI nr
Match: TYJ95665.1 (hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 1.67e-30
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LG ++I+D  IRW  VLK+HGEFYYLSH WEWLELAVARN T+LKRA LF+ VMA +YTY
Sbjct: 91  LGRRMISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTY 150

Query: 62  VRNSDIVRAFCEA 73
            RNSDIVRAFCEA
Sbjct: 151 DRNSDIVRAFCEA 163

BLAST of Chy2G042070 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 5.33e-30
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LGCQ+I+D  IRW  VLK+HGEFYYLSH WEWLELAVARNT +LKR  LF+AVMA +YTY
Sbjct: 91  LGCQMISDSKIRWGTVLKVHGEFYYLSHYWEWLELAVARNTAILKRDRLFDAVMASMYTY 150

Query: 62  VRNSDIVRAFCEA 73
            RNSDIVRAFCEA
Sbjct: 151 DRNSDIVRAFCEA 163

BLAST of Chy2G042070 vs. NCBI nr
Match: KAA0033523.1 (hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 2.10e-29
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 2   LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTY 61
           LG ++I+D  IRW  VLK+HGEFYYLSH WEWLELAVARN T+LKRA LF+ VMA +YTY
Sbjct: 200 LGRRMISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTY 259

Query: 62  VRNSDIVRAFCEA 73
            RNSDIVRAFCEA
Sbjct: 260 DRNSDIVRAFCEA 272

BLAST of Chy2G042070 vs. NCBI nr
Match: TYK06154.1 (uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 1.63e-28
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 6  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNS 65
          +I+D   RW  VLK+HGEFYYLSH WEWLEL VARNT +LK+A LF+ VMAFLYTY RNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 66 DIVRAFCEA 73
          D VRAFCEA
Sbjct: 61 DTVRAFCEA 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U4C39.8e-2578.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BB025.4e-2375.34PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7SST75.4e-2375.34PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3C4B82.3e-2173.91PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7SM275.0e-2172.46PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
XP_031745312.13.44e-3183.56uncharacterized protein LOC116405439 [Cucumis sativus][more]
TYJ95665.11.67e-3075.34hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa][more]
KAA0050733.15.33e-3078.08uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9... [more]
KAA0033523.12.10e-2975.34hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa][more]
TYK06154.11.63e-2873.91uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G042070.1Chy2G042070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane