Chy2G041910 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G041910
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Malate dehydrogenase
Location	chrH02: 22541004 .. 22541706 (+)
RNA-Seq Expression	Chy2G041910
Synteny	Chy2G041910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCATTAGTTGCTTCCTTGAACCTTTATGATATTGCAAATGTTAAGGGTGTTGCTGCTGATATTAGCCACTGTAACACTCCCTCAAAAGTTCAGGATATCACTGAACCTTTTGAATTAACCAATGCTTTAAAAGGTGTAGATGTTGTTGTCATACCTAGTAAGGTTCCAAGAAAGCCCGATATGACTCGTGATGACCTTTTCAACATAAATGCTAGCATAGTGAAAAGTTTGGTTGAGGATGTTGCTCATAATTGTTCATCATCCATATCATTAGCAACCCTGTGAACTCAACTATTCCAATAGCAGCGGAAGTTCTAAAGCAAAAGGGCATGTATGATCCAAAGAAGCTTTTTAGGGTTACTACTTTGGATGTTGTCCGGGAAAACACTATCGTTGCCAAAAAGAAGAACCTTAAACTGATTGATGTTGATATTCCAGTTGTTGGGGGACATGCTTGAATAACAATTTTTCCTTTGCTATCAAAGACACGCCCTTCAGTAAGTTTACGGATGAACAAATTCAAGAACTGGCTGTTAGAATTCAAAATGTGGGAACCAAAGTTGTGGAAGCGAAGGCTGGGGCAGGATCTGCTACCCTTTCAATGGCATATATTGCAGCACGATTGTTGAATCATCTCTTCGTGCTTTGGATGGAGACAGTGATGTTTACGAGTGCACTCTTGTACAATCTAATCTAA

mRNA sequence

ATGTCGTCATTAGTTGCTTCCTTGAACCTTTATGATATTGCAAATGTTAAGGGTGTTGCTGCTGATATTAGCCACTGTAACACTCCCTCAAAAGTTCAGGATATCACTGAACCTTTTGAATTAACCAATGCTTTAAAAGGTGTAGATGTTGTTGTCATACCTAGTAAGGTTCCAAGAAAGCCCGATATGACTCGTGATGACCTTTTCAACATAAATGCTAGCATAGTGAAAAGTTTGGTTGAGGATGTTGCTCATAATTGTTCATCATCCATATCATTAGCAACCCTTTGTTGGGGGACATGCTTGAATAACAATTTTTCCTTTGCTATCAAAGACACGCCCTTCAGTAAGTTTACGGATGAACAAATTCAAGAACTGGCTGTTAGAATTCAAAATGTGGGAACCAAAGTTGTGGAAGCGAAGGCTGGGGCAGGATCTGCTACCCTTTCAATGGCATATATTGCAGCACGATTGTTGAATCATCTCTTCGTGCTTTGGATGGAGACAGTGATGTTTACGAGTGCACTCTTGTACAATCTAATCTAA

Coding sequence (CDS)

ATGTCGTCATTAGTTGCTTCCTTGAACCTTTATGATATTGCAAATGTTAAGGGTGTTGCTGCTGATATTAGCCACTGTAACACTCCCTCAAAAGTTCAGGATATCACTGAACCTTTTGAATTAACCAATGCTTTAAAAGGTGTAGATGTTGTTGTCATACCTAGTAAGGTTCCAAGAAAGCCCGATATGACTCGTGATGACCTTTTCAACATAAATGCTAGCATAGTGAAAAGTTTGGTTGAGGATGTTGCTCATAATTGTTCATCATCCATATCATTAGCAACCCTTTGTTGGGGGACATGCTTGAATAACAATTTTTCCTTTGCTATCAAAGACACGCCCTTCAGTAAGTTTACGGATGAACAAATTCAAGAACTGGCTGTTAGAATTCAAAATGTGGGAACCAAAGTTGTGGAAGCGAAGGCTGGGGCAGGATCTGCTACCCTTTCAATGGCATATATTGCAGCACGATTGTTGAATCATCTCTTCGTGCTTTGGATGGAGACAGTGATGTTTACGAGTGCACTCTTGTACAATCTAATCTAA

Protein sequence

MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRKPDMTRDDLFNINASIVKSLVEDVAHNCSSSISLATLCWGTCLNNNFSFAIKDTPFSKFTDEQIQELAVRIQNVGTKVVEAKAGAGSATLSMAYIAARLLNHLFVLWMETVMFTSALLYNLI*

Homology

[Close]

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot
Match: Q9SN86 (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-40
Identity = 108/214 (50.47%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LV++L+LYDIANVKGVAAD+SHCNTPS+V+D T P EL + LK V+VVVIP+ VPRK
Sbjct: 104 MSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRK 163

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA+IVK+LVE VA NC            +S++ +A              
Sbjct: 164 PGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKK 223

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDE+IQE
Sbjct: 224 LFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQE 283

[Close]

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot
Match: Q42972 (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-27
Identity = 86/212 (40.57%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV ADISH NT + V+      +L NAL G+D+V+IP+ VPRK
Sbjct: 66  MNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 125

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IV++L E +A  C            +S++ +A              
Sbjct: 126 PGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P   FT E+I  
Sbjct: 186 LLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISY 245

[Close]

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot
Match: Q9XFW3 (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus OX=3708 GN=MDH2 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 85/212 (40.09%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ VPRK
Sbjct: 68  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRK 127

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++++A              
Sbjct: 128 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKK 187

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT  +I+ 
Sbjct: 188 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEY 247

[Close]

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot
Match: Q9ZP05 (Malate dehydrogenase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PMDH2 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-25
Identity = 84/212 (39.62%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ +PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++ +A              
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT ++I+ 
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

[Close]

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot
Match: P46488 (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus OX=3659 GN=MDHG PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-25
Identity = 86/212 (40.57%), Postives = 109/212 (51.42%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV ADISH +T + V+      +L  AL G+D+VVIP+ VPRK
Sbjct: 66  MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRK 125

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E +A  C            +S++ +A              
Sbjct: 126 PGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT E+I  
Sbjct: 186 LLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINY 245

[Close]

BLAST of Chy2G041910 vs. ExPASy TrEMBL
Match: A0A0A0LSB1 (Malate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_1G009760 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 9.4e-45
Identity = 110/159 (69.18%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 114 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 173

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNCSSSISLATLCWGTCLNNNFSFAIKDTPFSKFTD 120
           P MTRDDLFNINA IVKSLVE VA NC  +           +N+    A +     K  D
Sbjct: 174 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHII---SNPVNSTVPIAAE---VLKQKD 233

Query: 121 EQIQELAVRIQNVGTKVVEAKAGAGSATLSMAYIAARLL 160
           EQIQEL +R QN GT+VVEAKAGAGSATLSMAY AAR +
Sbjct: 234 EQIQELTIRTQNGGTEVVEAKAGAGSATLSMAYAAARFV 266

[Close]

BLAST of Chy2G041910 vs. ExPASy TrEMBL
Match: A0A5D3D2Y8 (Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00110 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.0e-43
Identity = 120/214 (56.07%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPNK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. ExPASy TrEMBL
Match: A0A1S3BRW9 (Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103492856 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.0e-43
Identity = 120/214 (56.07%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPNK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. ExPASy TrEMBL
Match: A0A5A7URZ9 (Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002470 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 119/214 (55.61%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. ExPASy TrEMBL
Match: A0A1S3BXM3 (Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103494326 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 119/214 (55.61%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 1   MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 60

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 61  PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 120

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 121 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 180

[Close]

BLAST of Chy2G041910 vs. NCBI nr
Match: XP_008453677.2 (PREDICTED: malate dehydrogenase, chloroplastic [Cucumis melo])

HSP 1 Score: 185 bits (470), Expect = 1.01e-54
Identity = 119/212 (56.13%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 1   MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 60

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 61  PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 120

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 157
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 121 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 180

[Close]

BLAST of Chy2G041910 vs. NCBI nr
Match: XP_008451622.1 (PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo] >KAA0068038.1 malate dehydrogenase [Cucumis melo var. makuwa] >TYK18090.1 malate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 4.81e-54
Identity = 120/212 (56.60%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPNK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 157
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. NCBI nr
Match: XP_038879863.1 (malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038879864.1 malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 187 bits (474), Expect = 4.81e-54
Identity = 120/212 (56.60%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 157
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. NCBI nr
Match: XP_038879862.1 (malate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 187 bits (474), Expect = 7.63e-54
Identity = 120/212 (56.60%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 135 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 194

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 195 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 254

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 157
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 255 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 314

[Close]

BLAST of Chy2G041910 vs. NCBI nr
Match: KAA0057944.1 (malate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 1.90e-53
Identity = 119/212 (56.13%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LVA+LNLYDIANVKGVAADISHCNTPSKVQD T P EL NALKGVDVVVIP+ VPRK
Sbjct: 115 MSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRK 174

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA IVKSLVE VA NC            +S++ +A              
Sbjct: 175 PGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 234

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 157
           L   T L+    N F                              K  P   FTDEQIQE
Sbjct: 235 LFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQE 294

[Close]

BLAST of Chy2G041910 vs. TAIR 10
Match: AT3G47520.1 (malate dehydrogenase )

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41
Identity = 108/214 (50.47%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           MS LV++L+LYDIANVKGVAAD+SHCNTPS+V+D T P EL + LK V+VVVIP+ VPRK
Sbjct: 104 MSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRK 163

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLFNINA+IVK+LVE VA NC            +S++ +A              
Sbjct: 164 PGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKK 223

Query: 121 LCWGTCLN----NNF--------------------------SFAIKDTPFSKFTDEQIQE 160
           L   T L+    N F                              K  P   FTDE+IQE
Sbjct: 224 LFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQE 283

[Close]

BLAST of Chy2G041910 vs. TAIR 10
Match: AT5G09660.1 (peroxisomal NAD-malate dehydrogenase 2 )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 84/212 (39.62%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ +PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++ +A              
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT ++I+ 
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

[Close]

BLAST of Chy2G041910 vs. TAIR 10
Match: AT5G09660.2 (peroxisomal NAD-malate dehydrogenase 2 )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 84/212 (39.62%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ +PRK
Sbjct: 43  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 102

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++ +A              
Sbjct: 103 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 162

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT ++I+ 
Sbjct: 163 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 222

[Close]

BLAST of Chy2G041910 vs. TAIR 10
Match: AT5G09660.3 (peroxisomal NAD-malate dehydrogenase 2 )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 84/212 (39.62%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ +PRK
Sbjct: 43  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 102

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++ +A              
Sbjct: 103 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 162

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT ++I+ 
Sbjct: 163 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 222

[Close]

BLAST of Chy2G041910 vs. TAIR 10
Match: AT5G09660.4 (peroxisomal NAD-malate dehydrogenase 2 )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 84/212 (39.62%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 1   MSSLVASLNLYDIANVKGVAADISHCNTPSKVQDITEPFELTNALKGVDVVVIPSKVPRK 60
           M+ LV+ L+LYD+ N  GV AD+SH +T + V+      +L +AL G+D+V+IP+ +PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 61  PDMTRDDLFNINASIVKSLVEDVAHNC------------SSSISLAT------------- 120
           P MTRDDLF INA IVK+L E VA  C            +S++ +A              
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 121 LCWGTCLN----NNFSFAI--------------------------KDTPFSKFTDEQIQE 158
           L   T L+    N F   +                          +  P S FT ++I+ 
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

The following BLAST results are available for this feature:

BLAST of Chy2G041910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN86	2.3e-40	50.47	Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g47520...	[more]
Q42972	8.5e-27	40.57	Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q9XFW3	1.2e-25	40.09	Malate dehydrogenase 2, glyoxysomal OS=Brassica napus OX=3708 GN=MDH2 PE=3 SV=1	[more]
Q9ZP05	1.6e-25	39.62	Malate dehydrogenase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PMDH2 PE=...	[more]
P46488	2.1e-25	40.57	Malate dehydrogenase, glyoxysomal OS=Cucumis sativus OX=3659 GN=MDHG PE=2 SV=1	[more]

BLAST of Chy2G041910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSB1	9.4e-45	69.18	Malate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_1G009760 PE=3 SV=1	[more]
A0A5D3D2Y8	4.0e-43	56.07	Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BRW9	4.0e-43	56.07	Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103492856 PE=3 SV=1	[more]
A0A5A7URZ9	1.2e-42	55.61	Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274...	[more]
A0A1S3BXM3	1.2e-42	55.61	Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103494326 PE=3 SV=1	[more]

BLAST of Chy2G041910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453677.2	1.01e-54	56.13	PREDICTED: malate dehydrogenase, chloroplastic [Cucumis melo]	[more]
XP_008451622.1	4.81e-54	56.60	PREDICTED: malate dehydrogenase, chloroplastic-like [Cucumis melo] >KAA0068038.1...	[more]
XP_038879863.1	4.81e-54	56.60	malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_038879862.1	7.63e-54	56.60	malate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida]	[more]
KAA0057944.1	1.90e-53	56.13	malate dehydrogenase [Cucumis melo var. makuwa]	[more]

BLAST of Chy2G041910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47520.1	1.6e-41	50.47	malate dehydrogenase	[more]
AT5G09660.1	1.1e-26	39.62	peroxisomal NAD-malate dehydrogenase 2	[more]
AT5G09660.2	1.1e-26	39.62	peroxisomal NAD-malate dehydrogenase 2	[more]
AT5G09660.3	1.1e-26	39.62	peroxisomal NAD-malate dehydrogenase 2	[more]
AT5G09660.4	1.1e-26	39.62	peroxisomal NAD-malate dehydrogenase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015955	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	GENE3D	3.90.110.10		coord: 100..177 e-value: 4.0E-9 score: 38.1
IPR015955	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	SUPERFAMILY	56327	LDH C-terminal domain-like	coord: 108..162
IPR001236	Lactate/malate dehydrogenase, N-terminal	PFAM	PF00056	Ldh_1_N	coord: 4..93 e-value: 3.1E-23 score: 82.4
None	No IPR available	GENE3D	3.40.50.720		coord: 1..99 e-value: 6.8E-27 score: 96.4
None	No IPR available	PANTHER	PTHR11540	MALATE AND LACTATE DEHYDROGENASE	coord: 1..89 coord: 111..160
None	No IPR available	PANTHER	PTHR11540:SF60	MALATE DEHYDROGENASE, GLYOXYSOMAL	coord: 1..89 coord: 111..160
IPR022383	Lactate/malate dehydrogenase, C-terminal	PFAM	PF02866	Ldh_1_C	coord: 116..163 e-value: 3.2E-11 score: 43.5
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 2..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G041910.1	Chy2G041910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016491	oxidoreductase activity