Chy2G041550 (gene) Cucumber (hystrix) v1

Overview
NameChy2G041550
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 21747425 .. 21747773 (+)
RNA-Seq ExpressionChy2G041550
SyntenyChy2G041550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGGCTCCTGGTCCTTCTCGTCTCACATCACATCTCAACTTCAGGATTTTTCAAGGAAGTCATGTCCTTGACATTTCTCATTAGTTTTGTCCTCTTTCTGGTGACTTGCCTCTTTCCGATGATCTCTAAACTCCAGATGTTGGGTTACTTATCCCCTTTCATTGGATAATCAGATTCTTCATGTTCTAACATTAGAATCTAGAAGTTTGAGTGGCATCATCCAAGAGTTGACTGATCGTCGAAGAACTCTAGACTCTCTTGTTCATCCATTGAGTCTTCTTTTGCCCCATAATGGTGAAGCCTCCACATCTACTGCTGCTATTGCTCCTTCCTCTCCCACATAG

mRNA sequence

ATGGTAAGGCTCCTGGTCCTTCTCGTCTCACATCACATCTCAACTTCAGGATTTTTCAAGGAAGTCATGTCCTTGACATTTCTCATTAGTTTTGTCCTCTTTCTGATTCTTCATGTTCTAACATTAGAATCTAGAAGTTTGAGTGGCATCATCCAAGAGTTGACTGATCGTCGAAGAACTCTAGACTCTCTTGTTCATCCATTGAGTCTTCTTTTGCCCCATAATGGTGAAGCCTCCACATCTACTGCTGCTATTGCTCCTTCCTCTCCCACATAG

Coding sequence (CDS)

ATGGTAAGGCTCCTGGTCCTTCTCGTCTCACATCACATCTCAACTTCAGGATTTTTCAAGGAAGTCATGTCCTTGACATTTCTCATTAGTTTTGTCCTCTTTCTGATTCTTCATGTTCTAACATTAGAATCTAGAAGTTTGAGTGGCATCATCCAAGAGTTGACTGATCGTCGAAGAACTCTAGACTCTCTTGTTCATCCATTGAGTCTTCTTTTGCCCCATAATGGTGAAGCCTCCACATCTACTGCTGCTATTGCTCCTTCCTCTCCCACATAG

Protein sequence

MVRLLVLLVSHHISTSGFFKEVMSLTFLISFVLFLILHVLTLESRSLSGIIQELTDRRRTLDSLVHPLSLLLPHNGEASTSTAAIAPSSPT*
Homology
[Close]
BLAST of Chy2G041550 vs. ExPASy TrEMBL
Match: A0A5A7TBV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00290 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.1e-04
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 35  LILHVLTLESRSLSGIIQELTDRRRTLDSLVHPLSLLLPHNGEASTSTAAIAPSSPT 92
           +I HVLT ES SLSGIIQEL   R+ ++ LVH  SL+LP  G  STSTA   PS+ T
Sbjct: 121 IIFHVLTTESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTSTA--NPSTST 175

[Close]
BLAST of Chy2G041550 vs. NCBI nr
Match: KAA0040543.1 (uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK05585.1 uncharacterized protein E5676_scaffold98G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.87e-06
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 35  LILHVLTLESRSLSGIIQELTDRRRTLDSLVHPLSLLLPHNGEASTSTA 83
           +I HVLT ES SLSGIIQEL   R+ ++ LVH  SL+LP  G  STSTA
Sbjct: 121 IIFHVLTTESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTSTA 169

The following BLAST results are available for this feature:
BLAST of Chy2G041550 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G041550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBV19.1e-0457.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Chy2G041550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040543.11.87e-0661.22uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK0... [more]
BLAST of Chy2G041550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G041550.1Chy2G041550.1mRNA