Chy2G041260 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G041260
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA-binding protein 48
Location	chrH02: 21026576 .. 21027305 (-)
RNA-Seq Expression	Chy2G041260
Synteny	Chy2G041260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATTGTGCCCCTGAGTCTGGAGCGTTATTGTGCCCGAGTTTGAACCATAACAATTTAACTTTCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCTTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAAACAAGAAGTTTTAGCCCGATTGGATTGTAAGTTATGCTATGGCATATATATATGTGCGTTTGGGTGTGTATAATAGGAAGATGTTGCTTTGGGTACATCTGGAAGGTACCAACTTAAAAATCCAATACCACCTAGGTCATAGTTAAGAAATGTTGTCTCCTTCTAATAGTTAAGAAATGTATAATAGGAAGAAGTTGCTTTGGGTATATCTTTAAGCATGTAATAACTTTTTTATCAGTTGGCAGACCAAGAGGATTTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAGCAGAAAAACTCTCTCGAAAAGAGGTTTGAGCCAAATTAAAAAATTTGCAGTTCTTGCAAACTTGACAAGTTTGTTTAAACTCTCTCTCTCTCTCTGGTAGGATTTATGGAGACGCAACAGTTATTTCCAATCCCTATGTTTCTCAAATAACTAGAGTTTCCTCTGACCAAGTTTGTTACCATGGTTGGTGTCCGACGTTTCAATGTCAGTCTGGACCGGGGATATGA

mRNA sequence

ATGGGTTATTGTGCCCCTGAGTCTGGAGCGTTATTGTGCCCGAGTTTGAACCATAACAATTTAACTTTCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCTTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAAACAAGAAGTTTTAGCCCGATTGGATTTTGGCAGACCAAGAGGATTTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAGCAGAAAAACTCTCTCGAAAAGAGGATTTATGGAGACGCAACAGTTATTTCCAATCCCTATGTTTCTCAAATAACTAGAGTTTCCTCTGACCAAGTTTGTTACCATGGTTGGTGTCCGACGTTTCAATGTCAGTCTGGACCGGGGATATGA

Coding sequence (CDS)

ATGGGTTATTGTGCCCCTGAGTCTGGAGCGTTATTGTGCCCGAGTTTGAACCATAACAATTTAACTTTCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCTTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAAACAAGAAGTTTTAGCCCGATTGGATTTTGGCAGACCAAGAGGATTTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAGCAGAAAAACTCTCTCGAAAAGAGGATTTATGGAGACGCAACAGTTATTTCCAATCCCTATGTTTCTCAAATAACTAGAGTTTCCTCTGACCAAGTTTGTTACCATGGTTGGTGTCCGACGTTTCAATGTCAGTCTGGACCGGGGATATGA

Protein sequence

MGYCAPESGALLCPSLNHNNLTFRFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTTAKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQVCYHGWCPTFQCQSGPGI*

Homology

[Close]

BLAST of Chy2G041260 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.3e-04
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVL 67
           R AKRK+DE  F G  L V YA EFE++ +T++KL+VRK  V+
Sbjct: 101 RAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

[Close]

BLAST of Chy2G041260 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.5e-42
Identity = 94/105 (89.52%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA EFESLLDTKEKLEVR++EVLARLD GRPRG AVSSTT
Sbjct: 108 RFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTT 167

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 129
           AKLTN SRSHYTL+QKNSLEKR YGDA +ISNP+VSQITRVSSDQ
Sbjct: 168 AKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQ 212

[Close]

BLAST of Chy2G041260 vs. ExPASy TrEMBL
Match: A0A1S3BAX9 (RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 18  HNNLTFRFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGF 77
           H+    RFAKRKLDEFVFLGNRLQVSYA EFESL+DTKEKLEVR++EVLARLD GRPRG 
Sbjct: 18  HSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGS 77

Query: 78  AVSSTTAKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 129
           AVSSTTAKLTNPSRS+YTLEQKNSLE R YGDA +IS+P+VSQ+TRVSSDQ
Sbjct: 78  AVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 128

[Close]

BLAST of Chy2G041260 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 18  HNNLTFRFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGF 77
           H+    RFAKRKLDEFVFLGNRLQVSYA EFESL+DTKEKLEVR++EVLARLD GRPRG 
Sbjct: 70  HSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGS 129

Query: 78  AVSSTTAKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 129
           AVSSTTAKLTNPSRS+YTLEQKNSLE R YGDA +IS+P+VSQ+TRVSSDQ
Sbjct: 130 AVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

[Close]

BLAST of Chy2G041260 vs. ExPASy TrEMBL
Match: A0A1S3BA34 (RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 18  HNNLTFRFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGF 77
           H+    RFAKRKLDEFVFLGNRLQVSYA EFESL+DTKEKLEVR++EVLARLD GRPRG 
Sbjct: 70  HSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGS 129

Query: 78  AVSSTTAKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 129
           AVSSTTAKLTNPSRS+YTLEQKNSLE R YGDA +IS+P+VSQ+TRVSSDQ
Sbjct: 130 AVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

[Close]

BLAST of Chy2G041260 vs. ExPASy TrEMBL
Match: A0A6J1KEG7 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA +FESLLDTKEKLEVR++EVLARLD GRPRG AV+S T
Sbjct: 76  RFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSAT 135

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQVCY 132
            K TNPS SHYTLEQKNSLEKR YGDA + SNP+VSQITRVSSDQ  Y
Sbjct: 136 TKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQFHY 183

[Close]

BLAST of Chy2G041260 vs. NCBI nr
Match: KAG7029202.1 (RNA-binding protein 48 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184 bits (468), Expect = 1.87e-56
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA +FESLLDTKEKLEVR++EVLARLD GRPRG AV+S T
Sbjct: 52  RFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSAT 111

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQVCYH 132
            K TNPS SHYTLEQKNSLEKR YGDA + SNP+VSQITRVSSDQVCYH
Sbjct: 112 TKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQVCYH 160

[Close]

BLAST of Chy2G041260 vs. NCBI nr
Match: XP_038884637.1 (RNA-binding protein 48 isoform X3 [Benincasa hispida])

HSP 1 Score: 181 bits (459), Expect = 4.09e-55
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA EFESLLDT+EKLEVR++EVLARLD GRPRG AVSSTT
Sbjct: 76  RFAKRKLDEFVFLGNRLQVSYAPEFESLLDTEEKLEVRRREVLARLDSGRPRGSAVSSTT 135

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQV 129
           AK TNPSRSHYTLEQKNSLE R YGD T+ISNP+VSQITRVSSDQV
Sbjct: 136 AKRTNPSRSHYTLEQKNSLETRNYGDTTLISNPHVSQITRVSSDQV 181

[Close]

BLAST of Chy2G041260 vs. NCBI nr
Match: XP_031736619.1 (RNA-binding protein 48 isoform X4 [Cucumis sativus])

HSP 1 Score: 181 bits (458), Expect = 1.52e-54
Identity = 94/105 (89.52%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA EFESLLDTKEKLEVR++EVLARLD GRPRG AVSSTT
Sbjct: 108 RFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTT 167

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 128
           AKLTN SRSHYTL+QKNSLEKR YGDA +ISNP+VSQITRVSSDQ
Sbjct: 168 AKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQ 212

[Close]

BLAST of Chy2G041260 vs. NCBI nr
Match: XP_038884636.1 (RNA-binding protein 48 isoform X2 [Benincasa hispida])

HSP 1 Score: 179 bits (455), Expect = 4.08e-54
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA EFESLLDT+EKLEVR++EVLARLD GRPRG AVSSTT
Sbjct: 76  RFAKRKLDEFVFLGNRLQVSYAPEFESLLDTEEKLEVRRREVLARLDSGRPRGSAVSSTT 135

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 128
           AK TNPSRSHYTLEQKNSLE R YGD T+ISNP+VSQITRVSSDQ
Sbjct: 136 AKRTNPSRSHYTLEQKNSLETRNYGDTTLISNPHVSQITRVSSDQ 180

[Close]

BLAST of Chy2G041260 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 181 bits (458), Expect = 5.52e-54
Identity = 94/105 (89.52%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDEFVFLGNRLQVSYA EFESLLDTKEKLEVR++EVLARLD GRPRG AVSSTT
Sbjct: 108 RFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTT 167

Query: 84  AKLTNPSRSHYTLEQKNSLEKRIYGDATVISNPYVSQITRVSSDQ 128
           AKLTN SRSHYTL+QKNSLEKR YGDA +ISNP+VSQITRVSSDQ
Sbjct: 168 AKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQ 212

[Close]

BLAST of Chy2G041260 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDE  FLGNRLQ+SYA E+E++ DTK+KLE R++EVLARL+   P+    +S  
Sbjct: 76  RFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLN---PQKEKSTSQV 135

Query: 84  AKLTNP--SRSHYTLEQKNSLEKRIY-GDATVISNPYVSQITRVSSDQ 129
            KL  P  +++     Q+  +E + + G+A V         TRVSSDQ
Sbjct: 136 TKLAGPALTQTDNVSSQRREMEYQFHRGNAPV---------TRVSSDQ 171

[Close]

BLAST of Chy2G041260 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 24  RFAKRKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTT 83
           RFAKRKLDE  FLGNRLQ+SYA E+E++ DTK+KLE R++EVLARL+   P+    +S  
Sbjct: 76  RFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLN---PQKEKSTSQV 135

Query: 84  AKLTNP--SRSHYTLEQKNSLEKRIY-GDATVISNPYVSQITRVSSDQ 129
            KL  P  +++     Q+  +E + + G+A V         TRVSSDQ
Sbjct: 136 TKLAGPALTQTDNVSSQRREMEYQFHRGNAPV---------TRVSSDQ 171

[Close]

BLAST of Chy2G041260 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 28  RKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTTAKLT 87
           RKLDE  FLGNRLQ+SYA E+ES+ DTKEKLE R++EVLARL+   P     +S   KL 
Sbjct: 432 RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQVTKLA 491

Query: 88  NPS 91
            P+
Sbjct: 492 GPA 491

[Close]

BLAST of Chy2G041260 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 28  RKLDEFVFLGNRLQVSYALEFESLLDTKEKLEVRKQEVLARLDFGRPRGFAVSSTTAKLT 87
           RKLDE  FLGNRLQ+SYA E+ES+ DTKEKLE R++EVLARL+   P     +S   KL 
Sbjct: 407 RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQVTKLA 466

Query: 88  NPS 91
            P+
Sbjct: 467 GPA 466

The following BLAST results are available for this feature:

BLAST of Chy2G041260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5R4U2	6.3e-04	53.49	RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1	[more]

BLAST of Chy2G041260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL2	3.5e-42	89.52	RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1	[more]
A0A1S3BAX9	2.3e-41	82.88	RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 S...	[more]
A0A5A7V5K4	2.3e-41	82.88	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3BA34	2.3e-41	82.88	RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1	[more]
A0A6J1KEG7	1.9e-40	83.33	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]

BLAST of Chy2G041260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029202.1	1.87e-56	85.32	RNA-binding protein 48 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038884637.1	4.09e-55	88.68	RNA-binding protein 48 isoform X3 [Benincasa hispida]	[more]
XP_031736619.1	1.52e-54	89.52	RNA-binding protein 48 isoform X4 [Cucumis sativus]	[more]
XP_038884636.1	4.08e-54	88.57	RNA-binding protein 48 isoform X2 [Benincasa hispida]	[more]
XP_004142975.1	5.52e-54	89.52	RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro...	[more]

BLAST of Chy2G041260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27790.1	1.4e-14	47.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	1.4e-14	47.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G27300.1	1.1e-11	58.73	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	1.1e-11	58.73	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 24..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G041260.1	Chy2G041260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003723	RNA binding