Chy2G041110 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G041110
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	bark storage protein A
Location	chrH02: 20754822 .. 20755420 (+)
RNA-Seq Expression	Chy2G041110
Synteny	Chy2G041110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGTTGGAAATGCAAATCCTCAGCTTGAAATTGGGGATGCAACAATTCCTCAACATTGGGCTCATACAGGCCTATGGAATTGGCACTTGCCAGGTAATACTGTTATAATACCCTAATAGCATTTCCATCATTCGATTCAAGCAAACAGGATCTGCGTAAGAATCTTATGTTTGAAGAAACATTTTTCATGATTGTAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATTCAATGTGACCTCCATTGACACCATAACTGCAGTAGTGGCACTCGTCTCTCTTCAACAAAAGATGTCCTTCATTGCAATTAGATCAACGTCATTTCTCTATATCAATAGATTCAATGAATTTCTTGCATTAAGCTGGTTCTACCATTTCGATTTTGCCTTACCTCTTCGTGCCACTGTGCAGTGCCACAACGCTATATCACACGCCAAGGTAAAGGCTCGCAGTTCTTTGGTATGGTCAATCACACACTTGGAACTCTAA

mRNA sequence

ATGGAACAGTTGGAAATGCAAATCCTCAGCTTGAAATTGGGGATGCAACAATTCCTCAACATTGGGCTCATACAGGCCTATGGAATTGGCACTTGCCAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATTCAATGTGACCTCCATTGACACCATAACTGCAGTAGTGGCACTCGTCTCTCTTCAACAAAAGATGTCCTTCATTGCAATTAGATCAACGTCATTTCTCTATATCAATAGATTCAATGAATTTCTTGCATTAAGCTGGTTCTACCATTTCGATTTTGCCTTACCTCTTCGTGCCACTGTGCAGTGCCACAACGCTATATCACACGCCAAGGTAAAGGCTCGCAGTTCTTTGGTATGGTCAATCACACACTTGGAACTCTAA

Coding sequence (CDS)

ATGGAACAGTTGGAAATGCAAATCCTCAGCTTGAAATTGGGGATGCAACAATTCCTCAACATTGGGCTCATACAGGCCTATGGAATTGGCACTTGCCAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATTCAATGTGACCTCCATTGACACCATAACTGCAGTAGTGGCACTCGTCTCTCTTCAACAAAAGATGTCCTTCATTGCAATTAGATCAACGTCATTTCTCTATATCAATAGATTCAATGAATTTCTTGCATTAAGCTGGTTCTACCATTTCGATTTTGCCTTACCTCTTCGTGCCACTGTGCAGTGCCACAACGCTATATCACACGCCAAGGTAAAGGCTCGCAGTTCTTTGGTATGGTCAATCACACACTTGGAACTCTAA

Protein sequence

MEQLEMQILSLKLGMQQFLNIGLIQAYGIGTCQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALVSLQQKMSFIAIRSTSFLYINRFNEFLALSWFYHFDFALPLRATVQCHNAISHAKVKARSSLVWSITHLEL*

Homology

[Close]

BLAST of Chy2G041110 vs. ExPASy Swiss-Prot
Match: Q07469 (Bark storage protein A OS=Populus deltoides OX=3696 GN=BSPA PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 31/102 (30.39%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           +KL  C S   C P  P  V   +  +++ +  NKAY +FL+  F+  + DT +A VAL 
Sbjct: 200 MKLRKCYSD-ECLPGKPKVVFGSKSSTSDFYVRNKAYGDFLNDNFDAKTADTASASVALT 259

Query: 95  SLQQKMSFIAIRSTSFL-----------YINRFNEFLALSWF 126
           SL  +  F+  +  S +           Y+  +N FLA + F
Sbjct: 260 SLSNEKLFVVFQGVSNVAGETSSNSRVSYLASYNAFLAATKF 300

[Close]

BLAST of Chy2G041110 vs. ExPASy Swiss-Prot
Match: Q09117 (Bark storage protein B OS=Populus deltoides OX=3696 GN=BSP PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 31/102 (30.39%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           +KL  C S   C P  P  V   +  +++ +  NKAY +FL+  F+  + DT +A VAL 
Sbjct: 200 MKLRKCYSD-ECLPGEPKVVFGSKSSTSDFYVRNKAYGDFLNDNFDAKTADTTSASVALT 259

Query: 95  SLQQKMSFIAIRSTSFL-----------YINRFNEFLALSWF 126
           SL  +  F+  +  S +           Y+  +N FLA + F
Sbjct: 260 SLSNEKLFVVFQGVSNVAGETSSNSRVSYLASYNAFLAATKF 300

[Close]

BLAST of Chy2G041110 vs. ExPASy TrEMBL
Match: A0A0A0M0L4 (PNP_UDP_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G696520 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLE CL+STNC PR PVAVRVQRGVSANVF  NKAY+EFL STFNVTSID  TA VALV
Sbjct: 238 LKLERCLNSTNCLPRAPVAVRVQRGVSANVFVDNKAYREFLQSTFNVTSIDMETAAVALV 297

Query: 95  SLQQKMSFIAIRSTSFL 112
            LQQK+ FIA RS S L
Sbjct: 298 CLQQKIPFIAFRSLSDL 314

[Close]

BLAST of Chy2G041110 vs. ExPASy TrEMBL
Match: A0A6J1JJT3 (bark storage protein A OS=Cucurbita maxima OX=3661 GN=LOC111485222 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-21
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGC++ST C PR PVAVRVQRGV+ANVF  NK+Y+EFLHSTFNVT ID  +A VALV
Sbjct: 236 LKLEGCVNSTACLPRAPVAVRVQRGVTANVFVDNKSYREFLHSTFNVTPIDMESAAVALV 295

Query: 95  SLQQKMSFIAIRSTSFL 112
            LQQK+ FIAIRS S L
Sbjct: 296 CLQQKIPFIAIRSLSDL 312

[Close]

BLAST of Chy2G041110 vs. ExPASy TrEMBL
Match: A0A6J1HA24 (bark storage protein A OS=Cucurbita moschata OX=3662 GN=LOC111461849 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-21
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGC++ST C PR PVAVRVQRGV+ANVF  NK+Y+EFLHSTFNVT ID  +A VALV
Sbjct: 236 LKLEGCVNSTACLPRAPVAVRVQRGVTANVFVDNKSYREFLHSTFNVTPIDMESAAVALV 295

Query: 95  SLQQKMSFIAIRSTSFL 112
            LQQK+ FIAIRS S L
Sbjct: 296 CLQQKIPFIAIRSLSDL 312

[Close]

BLAST of Chy2G041110 vs. ExPASy TrEMBL
Match: A0A5A7V320 (Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001130 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLE CL+STNC PR P+AVRVQR VSANVF  NKAY+EFL STFNVTSID  TA VALV
Sbjct: 238 LKLERCLNSTNCLPRAPIAVRVQRSVSANVFVDNKAYREFLQSTFNVTSIDMETAAVALV 297

Query: 95  SLQQKMSFIAIRSTSFL 112
            L+QK+ FIAIRS S L
Sbjct: 298 CLRQKIPFIAIRSLSDL 314

[Close]

BLAST of Chy2G041110 vs. ExPASy TrEMBL
Match: A0A5D3E1P1 (Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00050 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLE CL+STNC PR P+AVRVQR VSANVF  NKAY+EFL STFNVTSID  TA VALV
Sbjct: 238 LKLERCLNSTNCLPRAPIAVRVQRSVSANVFVDNKAYREFLQSTFNVTSIDMETAAVALV 297

Query: 95  SLQQKMSFIAIRSTSFL 112
            L+QK+ FIAIRS S L
Sbjct: 298 CLRQKIPFIAIRSLSDL 314

[Close]

BLAST of Chy2G041110 vs. NCBI nr
Match: XP_038880578.1 (bark storage protein A-like [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 1.50e-27
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGCL+STNC PR PVAVRVQRGVSANVF  NKAY+EFL STFNVTSID  TA VALV
Sbjct: 238 LKLEGCLNSTNCLPRAPVAVRVQRGVSANVFVDNKAYREFLQSTFNVTSIDMETAAVALV 297

Query: 95  SLQQKMSFIAIRSTS 109
            LQQK+ FIAIRS S
Sbjct: 298 CLQQKIPFIAIRSLS 312

[Close]

BLAST of Chy2G041110 vs. NCBI nr
Match: XP_011660294.1 (bark storage protein A [Cucumis sativus] >KGN66819.1 hypothetical protein Csa_007555 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 8.38e-26
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLE CL+STNC PR PVAVRVQRGVSANVF  NKAY+EFL STFNVTSID  TA VALV
Sbjct: 238 LKLERCLNSTNCLPRAPVAVRVQRGVSANVFVDNKAYREFLQSTFNVTSIDMETAAVALV 297

Query: 95  SLQQKMSFIAIRSTS 109
            LQQK+ FIA RS S
Sbjct: 298 CLQQKIPFIAFRSLS 312

[Close]

BLAST of Chy2G041110 vs. NCBI nr
Match: XP_023516616.1 (bark storage protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (271), Expect = 6.04e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGC++ST C PR PVAVRVQRGV+ANVF  NK+Y+EFLHSTFNVT ID  +A VALV
Sbjct: 236 LKLEGCVNSTACLPRAPVAVRVQRGVTANVFVDNKSYREFLHSTFNVTPIDMESAAVALV 295

Query: 95  SLQQKMSFIAIRSTS 109
            LQQK+ FIAIRS S
Sbjct: 296 CLQQKIPFIAIRSLS 310

[Close]

BLAST of Chy2G041110 vs. NCBI nr
Match: KAG6589927.1 (Bark storage protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023596.1 Bark storage protein A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (271), Expect = 6.04e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGC++ST C PR PVAVRVQRGV+ANVF  NK+Y+EFLHSTFNVT ID  +A VALV
Sbjct: 236 LKLEGCVNSTACLPRAPVAVRVQRGVTANVFVDNKSYREFLHSTFNVTPIDMESAAVALV 295

Query: 95  SLQQKMSFIAIRSTS 109
            LQQK+ FIAIRS S
Sbjct: 296 CLQQKIPFIAIRSLS 310

[Close]

BLAST of Chy2G041110 vs. NCBI nr
Match: XP_022961326.1 (bark storage protein A [Cucurbita moschata])

HSP 1 Score: 108 bits (271), Expect = 6.04e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 35  LKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALV 94
           LKLEGC++ST C PR PVAVRVQRGV+ANVF  NK+Y+EFLHSTFNVT ID  +A VALV
Sbjct: 236 LKLEGCVNSTACLPRAPVAVRVQRGVTANVFVDNKSYREFLHSTFNVTPIDMESAAVALV 295

Query: 95  SLQQKMSFIAIRSTS 109
            LQQK+ FIAIRS S
Sbjct: 296 CLQQKIPFIAIRSLS 310

[Close]

BLAST of Chy2G041110 vs. TAIR 10
Match: AT4G28940.1 (Phosphorylase superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 36  KLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVALVS 95
           KL  C+++T C PR P    V+RG+SA+VF  N AY+ FL+S FN T+++  +A VAL+S
Sbjct: 231 KLPQCVNTT-CLPRPPKVTIVKRGMSASVFIDNAAYRTFLNSKFNATAVEMESAAVALIS 290

Query: 96  LQQKMSFIAIRSTSFL 112
            QQ + FI IR+ S L
Sbjct: 291 HQQNLPFIVIRALSDL 305

[Close]

BLAST of Chy2G041110 vs. TAIR 10
Match: AT4G24340.1 (Phosphorylase superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-06
Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 33  QRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVA 92
           ++++L  C++++ C P  P  V   +  +A++F  N AY+ FL+ TF V+S D  ++ VA
Sbjct: 227 EKMELLQCVNASLCLPNKPKVVVGLKAATADIFVDNAAYRNFLYDTFGVSSSDMESSAVA 286

Query: 93  LVSLQQKMSFIAIRSTSFL 112
           +  +      I IR  S L
Sbjct: 287 MTCVSNGYPLIVIRGLSDL 305

[Close]

BLAST of Chy2G041110 vs. TAIR 10
Match: AT4G24350.1 (Phosphorylase superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 25/79 (31.65%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 33  QRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVA 92
           ++++L  C++++ C P+ P  V   +  +A +F  N AY+ FL+ TF V+S D  ++ VA
Sbjct: 224 EKMELSQCVNASLCLPKKPKLVVGLKAATAYIFVDNAAYRNFLYDTFGVSSSDMESSAVA 283

Query: 93  LVSLQQKMSFIAIRSTSFL 112
           +         I IR  S L
Sbjct: 284 MTCASNGYPIIVIRGLSDL 302

[Close]

BLAST of Chy2G041110 vs. TAIR 10
Match: AT4G24350.2 (Phosphorylase superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 25/79 (31.65%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 33  QRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTFNVTSIDTITAVVA 92
           ++++L  C++++ C P+ P  V   +  +A +F  N AY+ FL+ TF V+S D  ++ VA
Sbjct: 130 EKMELSQCVNASLCLPKKPKLVVGLKAATAYIFVDNAAYRNFLYDTFGVSSSDMESSAVA 189

Query: 93  LVSLQQKMSFIAIRSTSFL 112
           +         I IR  S L
Sbjct: 190 MTCASNGYPIIVIRGLSDL 208

The following BLAST results are available for this feature:

BLAST of Chy2G041110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07469	3.2e-04	30.39	Bark storage protein A OS=Populus deltoides OX=3696 GN=BSPA PE=2 SV=1	[more]
Q09117	3.2e-04	30.39	Bark storage protein B OS=Populus deltoides OX=3696 GN=BSP PE=1 SV=1	[more]

BLAST of Chy2G041110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0L4	1.7e-21	77.92	PNP_UDP_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G696520 P...	[more]
A0A6J1JJT3	8.6e-21	74.03	bark storage protein A OS=Cucurbita maxima OX=3661 GN=LOC111485222 PE=4 SV=1	[more]
A0A6J1HA24	8.6e-21	74.03	bark storage protein A OS=Cucurbita moschata OX=3662 GN=LOC111461849 PE=4 SV=1	[more]
A0A5A7V320	1.1e-20	75.32	Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7...	[more]
A0A5D3E1P1	1.1e-20	75.32	Bark storage protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]

BLAST of Chy2G041110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880578.1	1.50e-27	81.33	bark storage protein A-like [Benincasa hispida]	[more]
XP_011660294.1	8.38e-26	78.67	bark storage protein A [Cucumis sativus] >KGN66819.1 hypothetical protein Csa_00...	[more]
XP_023516616.1	6.04e-25	74.67	bark storage protein A [Cucurbita pepo subsp. pepo]	[more]
KAG6589927.1	6.04e-25	74.67	Bark storage protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023...	[more]
XP_022961326.1	6.04e-25	74.67	bark storage protein A [Cucurbita moschata]	[more]

BLAST of Chy2G041110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28940.1	3.2e-12	48.68	Phosphorylase superfamily protein	[more]
AT4G24340.1	2.7e-06	31.65	Phosphorylase superfamily protein	[more]
AT4G24350.1	3.5e-06	31.65	Phosphorylase superfamily protein	[more]
AT4G24350.2	3.5e-06	31.65	Phosphorylase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21234	PURINE NUCLEOSIDE PHOSPHORYLASE	coord: 33..109
None	No IPR available	PANTHER	PTHR21234:SF42	PHOSPHORYLASE SUPERFAMILY PROTEIN	coord: 33..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G041110.1	Chy2G041110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009116	nucleoside metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003824	catalytic activity