Chy2G040480 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G040480
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 19277802 .. 19278035 (+)
RNA-Seq Expression	Chy2G040480
Synteny	Chy2G040480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACTCCCCCTCTTAAATAAAAGAGGATCAAGTTATAGAGTTTGTGGTCCTCCCCCTAAAAGTAAGCGTTGGAAACGCCACATCTTGGTGATGTTCTTACCAAAGGAAAGGTCCCCTACCGGGCGTATGATTACCGAGGTTGTGGGGCGCTGTCAAGCATCAGCGTCTTCGACCGCTCGAGCCAACTTCTCCGACGAGGACACTGGAAAGAGTCCCCTTTCCATACACTGA

mRNA sequence

ATGCTACTCCCCCTCTTAAATAAAAGAGGATCAAGTTATAGAGTTTGTGGTCCTCCCCCTAAAAGTAAGCGTTGGAAACGCCACATCTTGGTGATGTTCTTACCAAAGGAAAGGTCCCCTACCGGGCGTATGATTACCGAGGTTGTGGGGCGCTGTCAAGCATCAGCGTCTTCGACCGCTCGAGCCAACTTCTCCGACGAGGACACTGGAAAGAGTCCCCTTTCCATACACTGA

Coding sequence (CDS)

ATGCTACTCCCCCTCTTAAATAAAAGAGGATCAAGTTATAGAGTTTGTGGTCCTCCCCCTAAAAGTAAGCGTTGGAAACGCCACATCTTGGTGATGTTCTTACCAAAGGAAAGGTCCCCTACCGGGCGTATGATTACCGAGGTTGTGGGGCGCTGTCAAGCATCAGCGTCTTCGACCGCTCGAGCCAACTTCTCCGACGAGGACACTGGAAAGAGTCCCCTTTCCATACACTGA

Protein sequence

MLLPLLNKRGSSYRVCGPPPKSKRWKRHILVMFLPKERSPTGRMITEVVGRCQASASSTARANFSDEDTGKSPLSIH*

Homology

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BLAST of Chy2G040480 vs. NCBI nr
Match: TYH29346.1 (hypothetical protein ES288_A01G004100v1 [Gossypium darwinii])

HSP 1 Score: 45.1 bits (105), Expect = 6.48e-04
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 1  MLLPLLNK-RGSSYRVCGPP--PKSKRWKRHILVMFLP 35
          M LPL  + RG+S+R+CG P  PKSKRWKRH L M  P
Sbjct: 1  MSLPLTYRLRGASFRICGTPFCPKSKRWKRHYLCMLSP 38

The following BLAST results are available for this feature:

BLAST of Chy2G040480 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G040480 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G040480 vs. NCBI nr


Match Name	E-value	Identity	Description
TYH29346.1	6.48e-04	60.53	hypothetical protein ES288_A01G004100v1 [Gossypium darwinii]	[more]

BLAST of Chy2G040480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G040480.1	Chy2G040480.1	mRNA