Chy2G040470 (gene) Cucumber (hystrix) v1

Overview
NameChy2G040470
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDynein heavy chain 17
LocationchrH02: 19275484 .. 19275714 (+)
RNA-Seq ExpressionChy2G040470
SyntenyChy2G040470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGGTAAGATGATGATGGCCCCTTCGGGGTCTTCGGGAGCATCAAGCTCGACTGCAGCAAATCCTCTTGGTCAAGTGGTGGAAAAGAGAAATTACGCAGTTTCCCAAGATGATCTTTTTGATGCAGTGGAAGCAGAGGAAAGGAGAGAGTGGGAAGAGCTCCGTAACACAAAGGAATGGAAAGAAAGTGAGTTTGAAGAGTTCGAAAGAGAAAGTGAGATTTGA

mRNA sequence

ATGGAAGATGGTAAGATGATGATGGCCCCTTCGGGGTCTTCGGGAGCATCAAGCTCGACTGCAGCAAATCCTCTTGGTCAAGTGGTGGAAAAGAGAAATTACGCAGTTTCCCAAGATGATCTTTTTGATGCAGTGGAAGCAGAGGAAAGGAGAGAGTGGGAAGAGCTCCGTAACACAAAGGAATGGAAAGAAAGTGAGTTTGAAGAGTTCGAAAGAGAAAGTGAGATTTGA

Coding sequence (CDS)

ATGGAAGATGGTAAGATGATGATGGCCCCTTCGGGGTCTTCGGGAGCATCAAGCTCGACTGCAGCAAATCCTCTTGGTCAAGTGGTGGAAAAGAGAAATTACGCAGTTTCCCAAGATGATCTTTTTGATGCAGTGGAAGCAGAGGAAAGGAGAGAGTGGGAAGAGCTCCGTAACACAAAGGAATGGAAAGAAAGTGAGTTTGAAGAGTTCGAAAGAGAAAGTGAGATTTGA

Protein sequence

MEDGKMMMAPSGSSGASSSTAANPLGQVVEKRNYAVSQDDLFDAVEAEERREWEELRNTKEWKESEFEEFERESEI*
Homology
BLAST of Chy2G040470 vs. ExPASy TrEMBL
Match: A0A5A7P3C3 (Dynein heavy chain 17 OS=Striga asiatica OX=4170 GN=STAS_03012 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.7e-16
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1   MEDGKMMMAPSGSSGASSSTAANPLGQVVEKRNYAVSQDDLFDAVEAEERREWEELRNTK 60
           M+DGKMMMAPSGSS ASSST ANP+GQVVE RNY VSQD LFDAV AEE REWEELRN+ 
Sbjct: 120 MKDGKMMMAPSGSSEASSSTTANPVGQVVENRNYEVSQDALFDAVGAEEMREWEELRNSG 179

Query: 61  E 62
           E
Sbjct: 180 E 180

BLAST of Chy2G040470 vs. ExPASy TrEMBL
Match: A0A5A7SWH3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48403G00020 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 36 VSQDDLFDAVEAEERREWEELRNTKEWKESEFE 69
          VSQDDLFDAVEAEERREWEELRN+KEWKE+  E
Sbjct: 26 VSQDDLFDAVEAEERREWEELRNSKEWKETPSE 58

BLAST of Chy2G040470 vs. ExPASy TrEMBL
Match: A0A5A7QJV4 (Glycerol-3-phosphate acyltransferase 1 OS=Striga asiatica OX=4170 GN=STAS_22598 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 0

Query: 24 PLGQVVEKRNYAVSQDDLFDAVEAEERREWEELRNTKEWKESE 67
          P GQ VE +NY VSQD++++AV+ EERR+++ELRN+KEW+E E
Sbjct: 42 PQGQGVEDQNYEVSQDEVWNAVDEEERRKYQELRNSKEWQERE 84

BLAST of Chy2G040470 vs. NCBI nr
Match: GER27316.1 (dynein heavy chain 17 [Striga asiatica])

HSP 1 Score: 91.7 bits (226), Expect = 4.53e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1   MEDGKMMMAPSGSSGASSSTAANPLGQVVEKRNYAVSQDDLFDAVEAEERREWEELRNT 59
           M+DGKMMMAPSGSS ASSST ANP+GQVVE RNY VSQD LFDAV AEE REWEELRN+
Sbjct: 120 MKDGKMMMAPSGSSEASSSTTANPVGQVVENRNYEVSQDALFDAVGAEEMREWEELRNS 178

BLAST of Chy2G040470 vs. NCBI nr
Match: KAA0035390.1 (hypothetical protein E6C27_scaffold48403G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.87e-08
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 36 VSQDDLFDAVEAEERREWEELRNTKEWKES 65
          VSQDDLFDAVEAEERREWEELRN+KEWKE+
Sbjct: 26 VSQDDLFDAVEAEERREWEELRNSKEWKET 55

BLAST of Chy2G040470 vs. NCBI nr
Match: GER45629.1 (glycerol-3-phosphate acyltransferase 1 [Striga asiatica])

HSP 1 Score: 53.9 bits (128), Expect = 1.12e-06
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 0

Query: 24 PLGQVVEKRNYAVSQDDLFDAVEAEERREWEELRNTKEWKESE 66
          P GQ VE +NY VSQD++++AV+ EERR+++ELRN+KEW+E E
Sbjct: 42 PQGQGVEDQNYEVSQDEVWNAVDEEERRKYQELRNSKEWQERE 84

BLAST of Chy2G040470 vs. NCBI nr
Match: XP_015947648.1 (uncharacterized protein LOC107472660 [Arachis duranensis])

HSP 1 Score: 50.1 bits (118), Expect = 9.07e-05
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 2   EDGKMMMAPSGS----SGASSSTAANPLGQVVEKRNYA-VSQDDLFDAVEAEERREWEEL 61
           +D  M + P+GS    SG SSS   NP+   +++  +  V QD ++DAV+AEERR+  EL
Sbjct: 186 DDIGMSVLPTGSDSTSSGTSSSNPGNPVVPPIDQGVHGEVQQDTIWDAVDAEERRKEAEL 245

Query: 62  RNTKEWKESE 66
           RN+KEWKESE
Sbjct: 246 RNSKEWKESE 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7P3C38.7e-1681.97Dynein heavy chain 17 OS=Striga asiatica OX=4170 GN=STAS_03012 PE=4 SV=1[more]
A0A5A7SWH32.4e-0587.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7QJV42.6e-0460.47Glycerol-3-phosphate acyltransferase 1 OS=Striga asiatica OX=4170 GN=STAS_22598 ... [more]
Match NameE-valueIdentityDescription
GER27316.14.53e-2183.05dynein heavy chain 17 [Striga asiatica][more]
KAA0035390.11.87e-0893.33hypothetical protein E6C27_scaffold48403G00020 [Cucumis melo var. makuwa][more]
GER45629.11.12e-0660.47glycerol-3-phosphate acyltransferase 1 [Striga asiatica][more]
XP_015947648.19.07e-0548.57uncharacterized protein LOC107472660 [Arachis duranensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G040470.1Chy2G040470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016746 acyltransferase activity