Chy2G039950 (gene) Cucumber (hystrix) v1

Overview
NameChy2G039950
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSWIB domain-containing protein
LocationchrH02: 18023970 .. 18034347 (+)
RNA-Seq ExpressionChy2G039950
SyntenyChy2G039950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTCGAATATGCTATGCTACTCCACTGCATACTTACCAAGCAAGTGTTCGATTTGGGAACTATTATCAAAGGGCACTCCTTGCCAAGGCGCCAAACCCTTCCCCTCCACAGTGGAGAAATTGTGCTTAAGGTATGTCCCTTCCCTCCCCTAGTTTCCACAAACAAGGCTTAATCGAGTAATCACCTTCTATTATAACAAAGAGGAAGAGCGCTGCCTTAAGACTTTGAGAAAGGATAAATTTGATGAAGAAGAAACGGAAGAGAATTCTCTACCGCCTCTGCCGCTTAGGAGGAAGGCCAAGTCAACCTCAACTTCACTTGCTAAGAAAGTAAAGGTTGATGTCCGCGCATCCTGTGCGTTCAATCACCAGTCCAAGATATCATGCTATCTTCACTAAACTCAAAAAACCCCATTTCGCCTAGCATAGCCCACCTCTCGGTCAACAACCTCTACTACTTAGAAGCTCATTTTCGGCCAGAACCTTACCTCTACGTTATACCTTAATAACTATAAATTCATAACTCAAATGTAAATACTTTCTTCTATAAAGTTGTTGCAAAATGTCTTAATATTCTGCCCTCTGGAAGTCCACTTTGGCCAGAATCACCTGTATTTTGACCTTTCTCAATTTCTTCGACAAAACTCAAACCTCCCTTACTCAAATTAAACTAGCAGCCCCAATACATAAAATAGACTCAAAATGAAAACTTTTAGTAGTAATTTTACTCAAAACGAACGAGTGGGTTGTGAGAAATTAAATTCTAAAGTTGACCTATTTATAGAGCCCCTTGCATGAATTTACGTTGACACCTCAGCCTTGCTTAACGCCACCTTAAACCTTATTAAGACACCTCCTACTTACTTTTACACCTCAAATTGCATGTTAACATGGTTTAGACACTTCACTTACTCCTTAAACCGATTGCCTTAATCATGCCATATAGTGGTCTAAAACGACCAAGTTAACCTTCATGTCCATTTCGCATAGCTTGGTCGCATAGCCTCTCAACGCCTAGTCTTAGCCACCTAGCAAACCTCCAAATGTTTAACTAAGATTCTTCGAGTGGACTTGTTTCCTCGCCCAAACTTCCTCGCATGAGAACCTCCTAACACAAGCCTTCCTCTCCTCGCTAGCTTCTTAGCCAACTGCCCAAGAAGCTTTCCTTTAACTCCTAAAGAGGTTCTCCATCTTCCATTTTGTCACCATGACACTCATTTGGAGATTCTTTGGCCTTCTTTGCCATCCATGCTAACCTCCCAATGCCTAGTGAATAAAATTTGACACTTAGCCAAAATTTTCCAACTTTTCTTTAATTCTCAAACCTATTATTTGAATTCCAAATAATTTTTACCTCTTTTTCCAAAAATGTCATTTTCGAGTCTTTGACTAAGCTTAGCAAACTCCAAAAGTTTAAGAAATTTTTGGGTTTCACAGACTCCTTATGAAGCATTATATGGAAGGCATTGTAGAACGTCAATTTGTTGGAAAGAAGTAGATAAAATGAAATTATATGGGCCAGAATTAGTTCAAGCGACAACAAATAATATCAAAATGATTAGAGAAAATTTAAAGGTCGCTCGGGATACATAGAAGAGTTATGCAAATTATCATTGCAAGGCATTAGAATTTGAAATTGAAGATCAAGTTTTGCTAAAATTGTCACCTTTGAAAGGTGTGATCAGATTTGGAAAAAAAGGAAAGCTAAGTCCAAGATATATAGGACCTTATGAAATCCTAAAATGCGTGGGATCAGTGGCCTATAAATTGAAGCTGCCTGCAAAACTGACTAGAATTCATAACGTGGTGTTTTGGCATTGGTTGAGTCTCACCGTCGAGCAAAAGTAATCATTTTGACATGGAAAACCTCGTTAGAGAAACTTATAAATAGGTGAAGTTTGGCCATTTTGAGGTTGATTTTACCTTGTAACCATTTAAGAATGAATTGAGAGAATTTCAAGATTATTAGAGATTTATTAAAAGCTTGAATTTGGCAAGGAATTTCAAGGGAGTGCTAGAAGGTTCTTGACTAAGGAGTAAGGCAAAGAAGCTAATTGATTGTGAGTGTTTCTTCTTCTTAAAATGTTTTCGAATGAAAAGGTTTTCTCATACCTTTGAATCCCTCTAATGATGTATTTCTATTGAATTCTTGAGTTATATGATTTCTCTCGTGATCCCAAATCTTTTAAAATAAATTTGAATTATAAATGATTTGGATTTAACTAGGGGTGTACATAAGTCGGGTTTGGTCGGGTTGGTGAAAAAATATGGACCAACCAAAAGTAGCTGGGTTGGCAGAAAATGAATCGTACCGGTTCAATATGCAAGGGTCAACCCAACCCAATCCAACCTAAAATATTCGGGTTAGGCTGGGATGGGTTGACAGGTTGGCCTTTTTTTTATTATTATTATTCATATTGTCTTTCAAAATTTTATATTGGTTATATAAGTGTAAAAATTCAATTTTCATCATTTTCATATTGTCTTTCAACCCAAAATTTCATATTCTTTTAAAATTCAAAGTTTATAATAATGTCCATTCAAATAATCAAAAGTTCAAATTCATACAAAAAGTTAATTGGCATTCAAAGCTCAAAGTTCAATGAAAAAACATTCCAACTTGCCATTCAAAGTGCGCCACGACGATTTTGGGTGAATGTTCTTCTAAGAATCTTGGCCACACTTCTTAATGCCTAAAAAGATACAAACACATAAGAATTATCAACAGTGATCGTAAATAAAACTTACAGATGCATATCTCGAGGCATCTTGGGACAACGATGCCCCGAGATATGCATTATATGAATTCATCATATTAAAACTTGAGGCATTATTGTCCTGAGATGCCATGAGTTTTAATATTAGTAATTCACAGAATGCATATCTCGGGGCATCGTTGTCTCGAGATGCCCCAAGTTTTAATTAAAGAATTTACATAATGCATATCTCAGGATATAGTTGGCCCGAGATGCCTCGAGTTTTAAATGGTGAGTCCTATCTTATGTCCCGAGTTTTAAAAGGATGCACAGAATGTGTACTCACATTTATGCTCTTCCTCCAAATCCAATTCATTAGTCCAAAACAATAAAGGATGGCAAGTTCCCTCCAAGATCAATCATACAAAAAGTAAATAAAAATATTATTTAGCACAGTACATATTAGTTGTTAGATATGTACAATAAAGAAAGCAATCAATTACCTATCTCAATATTCTCATAAGTCTCTAACTCTTCAAGTTATCGAGGAAGATCTAATAACACCAAGCCACCTCGAATCCAATTTTGCATACATATCAAGGTCTGATCAAATATTCTAGGAGTCAAAGAACTACGAACGGAATCAAGAATCTTCTCCCCTGTTAAATGCAGATTCAAAAGCCACGTAGATATTGGAGCCGCCAAAACATCTCGAACAATTATTGATAGAATGGGATATTTGTATCCATTTATTTTCCACCAATACTTAATATCAAATTTCATCTTTATCTACTACAACCTTGTCAGATAAATAAGAAGTCAAGTCATTCTCCACTTCAATTGAGCTTTCACTACTACAAAACTGACAATACTTGACGCCTGCAATTTTGATATTCTTGATAGTTTTAATAAAAATTGTCAAGTAGAAAAAAAAAACGTCAAGAATAACCAATAGTAAAAAAATGCATAATTTTTTAGTTTTTATTTTAAATACTTGACAGATTAAAAACGTCAAGTCTAATTTTATTTACTTGACATTTTTAATACATTTTTTCTCTATTTTCTAAAAACAAAAAATTTTCACTTTTTTCTCAAATTTCCCATTTTTCTCCAATTTTGTAAAAAAAAAAAACTTTTTCCTCTTGTTTTCCCCAAAATTTCCTTTTCCCCCAGTTTCTAAAAAGCCCTAATTATTTTTTCACTCAAATTTTTACTCATGTTTTCTCCATCCACGAATTCATCCCCTAACTTCAAACTTTCTCCCCCAAAATTCCCATCCAAGAAATCCATGGCCGCCCACCACGCCCAACATCCGACGACCCATCCACCACGCGCAAGCTCCGACAACCTGTCCACCACCTCAAGCTTTAACGGCAGTCCATCCGCTCTTCAACATCTGTTCGTCTGCCACTTGTTAATCAGCTTGACGAGTGTGTTTTGACTTCACTTCCTAATTGGGTTGAACGATCTAAAACGTTCCACTGGCCTCTCCGTCTCTTCACTTCACTTTCAGTCGTTCAAGTGTGTTTTGAGTATACACATTAAGATCAAAGCCTTAAATATGTTTTGAGTATAGTTCCCTCGTCTTTCAACACTAAGTCTGTTGTTGCTTTTCTTGAATTGGATATTTATAACCATTTTTTTTAATTAAATAGTTTTCTTCTACATCTTGTTTGTCAGTCTAAGTTCGAATGTTTTGAAAATTACTGATTATTTCTTTGCAAGTTAAGTTGATGAAGTTGGCCAAGAAGTTCAGTTTAGCTATAAGAATCAACCATCTCTCATTATAATGTTTTGAACTAACTCAAATATACGATTAGGTATCAACTTAAATTGATATGACGAGCATCTCCATTGCTTCTCAAGTATGTGGTTCACAAATATTTGTATTTAATTTGTAATTTTTCTAGTTTTCTAGCTGTAAATGAATCTTCTTTTGTGTTGCCCACCAAGTGTTTGATGAAAAGCCCATATGAATTATTTTAATAAAGTTGCAACAACAAGTTTCTTGTTTTAACTAGTATGTATGTATGGAAAATTTTTGTTCAGAGTTTTAATAAAGTTGTTTCTTATTTTAATAAAATTGCAATACTTGTTGGGATTATATTTTTTTGCATTCATACACAAATATTCATTCAAGCTTAAAGGTTTAATTATATATTCAACTTATTTACAATATCATTAGTTTCGATTAAATTCTTCTAAAGATTTAAAGTACAATACTTGTTGTGACTGATTCTTCCGCTTTAACCCTTTTCACATTTTCTCTCTTAATTCATTTCAGTGATGATGATAGACTTTTGGGCAGCAGTGCACCAGCAATGAGTAGAGTACGTCTTTTAGAGTGCTAGTGATATTTTTATGTACTACTTCATACACACTTATTTGTTTGTTTTAGTAATTACAATTAGAAATATATTGTTGTTGGGAGAAGTAATATTTATTGAATTTTAGCATTCATTTAGAAGAATCATTTTCCTAGAGCTTGTGGTAGAGAGTACCTTAAGTGGAGCTAGAAAGGTTTGTTATGGATCCAATGAAATTTGTGCATTCAACCATTTTACCTGTCGATTTTAATCATCAATATTCAACAACCAATTTCCTGACTTCTATGTTTAAGATGCTTAAAAGTTTTTTTTACTTAGAATTAATTTAACAAAAACTGAACCAAACTATGTTTGTTTAATATAAGAAATTGGCAAATAAAGTGCACCTAAAACTTAAGAATGGAGCCTATCTACAGGTATCTTTTTTCATATAATCACTTTGTTTTAGGTTCAAAGTATGAACTTGTCTATTGTACTTTCTATGTAGAGCTCTGCATGATTTTTAGAATAGAAGAATTGCAAAAGTAGTAAAGAGTGAAACAACTAGCAAGACTTTTTTTTTTTTTTTTTTTTTTTTAGTTTGTGGAGTTACCAAACATGCTTGGTTGTTTCTTTGAATTGAATCTTAGGATTTTAGATCATATTATGTTTTCTTTGAATTAAATTGTATTGCTTCTTCTTCCGTCAATATTGAAACACATAGCTCATACTTTAATGTGCTCTCCGTTAGCTTTGATCATATTATGTTTCTTTAGGAAATAAAATAAGTTATAGGTGATTTGTTTCTTTGAATTGAATCTTAGGATTCTAGATTATGTTAAGGCAATTTCTTTATTTGAATTGAATCTTATGACTTTAGATCATATTATGTTTCTTTGAATTAAATTGTATTGCTTCTTCTTCCGTCAATATTGAAACACATAGCTCATACTTTAATGTGCTCTCCCTTTAGCTTTGATCATATTATATGTTTCTTTAGGAAATAAAATAAGCTATAGGTGATTTGTTTCTTTGAATTGAATCTTAGGATTTTAGATTATGTTAAGGCTGGTTGTTTCTTTGAATTGAATCTTAGGATTTTAGATCATACTAGTTGGTAACTAACACGTGCTATGCACGTTAATTTTTTATTTTATTTAACTAAATAAAAATAGAGTAATTAATTACACAAATAGTATGATGCTATACTTATTTAATCATGATTTTTGCAAATATATTTTTCAGTTTTATTGCTTGAGAAAACTTTTACTCAATACTTGTTAATACATGTGAATAAATCAAATGAACTAAAAGATATAAAGAATTTGATAGTATGACTATGAAACCATCCATCCAATCAAACTTTAGATCAACGAGTAGGTTTTTTATATGTATCAATTATATGTCGAATGTTTACATGAATTGGAATTTTGGACATCATTGACTTATTATTATTTGAACATTTGTGCTAATTTTATATATTTTATGTATTTCTAACAAATTCCAGAAGTATAATTATTTAACAAATTTCTCAAGAATTATAATTAGTTATTTTTTAAAATGAATAATTTAAATTTAAATGAAAATATATTATTGAAATAATACAAATAGAGAAGACGTTTTTTTCTTCGATCCCTCAATTATAAGATCCATGATATACTATTGTGGTAAGCACATTTTACATCTCATCTTTACATCGAAAGCATACTTAACTACAAAGCAATAATTAAAAACTGAAAAAATAGTTACTTGACATCCGCATGCCACTTTGTTATTTTTTGGAAATGGCGTGTTTCTGATGGTTCTCTCTTTAGTCTTCCACTTTTACATTCTTCATCCTTGAATTCTCATCAATTTCTCTGGATCTTTTTTATTAGGTTGATTGGTTGCTCTTAGGCATCGCAAAAATCTAATGAAGGTTTGTGAGCGCTTTTGTAGCAGTCTTGGCTCACAAATCTTCATTTAAACTTGTTGGAAGATTAATTTCTTCACACCCATAACTTTTTTGTTGTGAACATGCATAGAAAAGAAAAAGAATGAGATATTTATACCCAAAGATTTGAAAAGGGAAAAGAATTTGAAAGATTGAAATAATTATAAAATAGTTAATATGAGAGAATGTGGAATGTGAAGGTGGGAGATAAAGGGATGTGAATGGTTTTAGAGAAATTTTAATGATATAATTAATTGGAGAGAAAAAGTTAAAATTATTAATACCCAAATATTTATTAATAATTAATTTCAAATTATAAAATAACAAAAAGCAAATTACAATAAACTCAAGTAAGAAACAAAAAAATCTACTAAGAAGAATGGCAAAATTGGAAATAAAAATTTCTCCTCATCTATGTTTTTATAAATACTATAGATTATGCTTCTTTGAATTAAATTGTATTACTTCTTCTTTTGTCGATGTTGAAACACATAGCTCATACTTTACTGTGCTCTCCGTTTAGCTTTGATCATATTATGTTTCTTTAGAAAATAAAATAAGCTATAGGTGATTTGTTTCTTTGAATTGAATCTTAGGATTTTAGATTATGTTAAAGGTGATTTATTTCTTTGAATTGAATCTTAGAATTTTAGATCATATTATGTTTCTTTGAATTAGATTGTATTGCTTCTTCTTCTGTTGATATTGAAACACATAGCTCATACTTTAATGTGCTTTTTGGAACCTTCTTTTTAAATAATGTGATTTTAGAAAGTATTGTCAAAAATAGGTTTGGGCCAAAACTATTGACAAAAATAGATGAGTTTGGGCAAAGTCGTGAACCCCATCCGCGATTTCAGTGAGGTGGCCGTGTGGGCCCCTTACCTTCTTTTTTCATTCATTATTTATATATAATATACATTATATGTGGGCCCCATGCCTTATTTTTTTTCATTATTTTATATATATACTAATTCATATACCCTTCATTCTAAAAACATCTTTACTTATCAAAATTAATATCAACTTTTCAATGTTAATTTATTCTTTTTCTTTTAATCTTTTATTCCTTTTTTTGTTATATATATTAAATATCTCAATATTCAATTTTTCTTATTAAATTCACCTTTCATAATTTAATTGGATTATTTCTTAATAAAAATTATACATATTTTTTTTTCATTTTATTTTTAAAAACACATATATTAGCAAAAATATGTTATTAAAAAATATAGGAGAATTTTTAAAAAGAGTAGATTTTACAAAATATTTACAACCTATAGCAAATTCTATCAGTGATAGTTATTGATATGCTATAGTGAGAAGACTATCAGTGATAGAATTCAAATTTTGCTATAGATTGTAAATACTTTAATTTATTTAGTTTTAAAAATGCCCCAAAAATATATTAAACAAATTAAAATAGTAATAATAATAATTGAGAGAAGTTGAAGCTTACCCTAAAAATAATAAGAATTGAAAATATATATACTAATTCCCCAAATACTCTCAATTCTGAAAAAATCCATGTCAATTGTTATGATTATTATTGTTGTTATTATTTTTGGAGTAAGCTTTTAACTTCTCTCAATTATTATTGTTACTATTTTAATTTGTTTATTATATTTTTTAATAACATATTTTTGTTAATATATGTGTTTTTTTAAAAAATTGAAAAAAAATGTATAACTTTGATTAAGAAATAATCTAATTAAATTAGGAAATGTGAATTTAATAAGAAAATTTGAATATTGGGATATTTGATATATAAAAAATAAATAAAAAGAAAAAAATTGAAATTAAAAAGTTGATATTAATTTTAATAAATAAAGATATTTTTAAAATTGAGGGTATGAGAATTAGTATATATAAAATAATATGTGTTTTTTTAAAAGAAATTAAAAAAATATATATTTTGGTGCACATACATAATATATAATATATAAATAATGAATGAAAAAGGAAGACGTGGGGCCCACACAGCTACATCACTGAAGTCGTGGAATGGGTCCATGACTTTACCCAAACTCACCTATTTTTGTCAATTGTTTTGGCCCAAACCTATTTTTGACAGTACTTTCTAAAATCACATTATTTTAGAAAAATGTTCCGCTTTCCGTTTAACTTTGATCATATTATGTTTCTTTAGGAAATAAAATAAGCTATAGGTGATTTGTTTCTTTGAATTGAATCTTAGAATTTTAGATTATGAAAAGGGAACAATGACTTTAGGCCAAGCTAGGTTGGGAAAGGTTAGAGCTCAGGGTTATCCCAAATTAACTTGATGAATACTAACCAATTACCCACTCCTTAATTAATATATGTTTCTTATATTGGCATCAGGCATGGATCACTCCGAGAGCTAGGGAAACCATTGCGATAGGACGTAAGTTGCTTGGAGGCAATGGGATTTTATCAGACTTTCTAGTTGCAAAGGTTTGCAAATTTACTCATTTCTTCATCTACAACATATATTGATGGGAAATAGTTTCTGATTGAAATGTGAGTTTTAAATAGTTAAATGTTTTGTCCATGAAAAACATTTTTTTTAAGAACATTCATAAAACAAGGGATGCTTAGAAACTAAGTTTATAAACGTTACTTCATAATTGGAGCATTGGAGCATGAGAGGATAAGTGTTTTTGCTTTTTAATATTAAGCTTATAAACAGTAGTTCTATCAATAATTTTCTTGTTTTTTTATCCACTTCCTATCAATAATTTTAACAAATCTTTCTAAAATTTGGTCAAAAAATTGAAAAGAAAAAAACTAGAAATGTTCATTTTCTAAAGCTTTGTGATTTATTTGTTTGGTATGTTTGTCAGCCATTCTGTGATTTGTTCGTACGTACGACATCAACATATTGGTAACTACCTACACCATATGTCCTTGTCTCTCAAGCTTGACTGGCTTACTATAGATTAACTGTAAATGAGTAAGATGGATGATTTTTTCTCTCCTAGTAAGATAACCTTCTACTAAACCATTATCCATGCCTCTCAAATTAAGCCTGTTAAGCACATTCATAATCACCCCAAAAGAGAATGATACTTGATTTTATGTGTAAATTCAATAGCTTTTGGTTTCTACTCCAGTTTGCGATATATTTTGCCGCTTTTCTGACTTTTCCAATGTCTTATGAAATGATCTTAGGAAGTTTGAAGTACTTGAAACTTTAATGAAGGAGCATCTATATATACCATATATATATATTCTTATATTAGTTAGTGTTATAAATATGTTTCTGAGTGCCATCACTCGATTTCTTTATTCAAATGAAATGTTATAAATATGTATATTTGTTGTCTAGGATCCTACCAACAAGAATTTGGTCATTTGTGATGAGAATTTAAAGAGTATATTTCTGGGCAAGCCCAAAGTTGAACTAGCTGAACTTCCTGCACTGATTAAATTACATTTTACCAAAAATCCCAAGTGA

mRNA sequence

ATGCCATTCGAATATGCTATGCTACTCCACTGCATACTTACCAAGCAAGTGTTCGATTTGGGAACTATTATCAAAGGGCACTCCTTGCCAAGGCGCCAAACCCTTCCCCTCCACAGTGGAGAAATTGTGCTTAAGTTTCCACAAACAAGGCTTAATCGAGTAATCACCTTCTATTATAACAAAGAGGAAGAGCGCTGCCTTAAGACTTTGAGAAAGGATAAATTTGATGAAGAAGAAACGGAAGAGAATTCTCTACCGCCTCTGCCGCTTAGGAGGAAGGCCAAGTCAACCTCAACTTCACTTGCTAAGAAAGTAAAGCATTCATTTAGAAGAATCATTTTCCTAGAGCTTGTGGTAGAGAGTACCTTAAGTGGAGCTAGAAAGGATCCTACCAACAAGAATTTGGTCATTTGTGATGAGAATTTAAAGAGTATATTTCTGGGCAAGCCCAAAGTTGAACTAGCTGAACTTCCTGCACTGATTAAATTACATTTTACCAAAAATCCCAAGTGA

Coding sequence (CDS)

ATGCCATTCGAATATGCTATGCTACTCCACTGCATACTTACCAAGCAAGTGTTCGATTTGGGAACTATTATCAAAGGGCACTCCTTGCCAAGGCGCCAAACCCTTCCCCTCCACAGTGGAGAAATTGTGCTTAAGTTTCCACAAACAAGGCTTAATCGAGTAATCACCTTCTATTATAACAAAGAGGAAGAGCGCTGCCTTAAGACTTTGAGAAAGGATAAATTTGATGAAGAAGAAACGGAAGAGAATTCTCTACCGCCTCTGCCGCTTAGGAGGAAGGCCAAGTCAACCTCAACTTCACTTGCTAAGAAAGTAAAGCATTCATTTAGAAGAATCATTTTCCTAGAGCTTGTGGTAGAGAGTACCTTAAGTGGAGCTAGAAAGGATCCTACCAACAAGAATTTGGTCATTTGTGATGAGAATTTAAAGAGTATATTTCTGGGCAAGCCCAAAGTTGAACTAGCTGAACTTCCTGCACTGATTAAATTACATTTTACCAAAAATCCCAAGTGA

Protein sequence

MPFEYAMLLHCILTKQVFDLGTIIKGHSLPRRQTLPLHSGEIVLKFPQTRLNRVITFYYNKEEERCLKTLRKDKFDEEETEENSLPPLPLRRKAKSTSTSLAKKVKHSFRRIIFLELVVESTLSGARKDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK*
Homology
[Close]
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DPTNKN+V+CDE LKSI LGKPKVELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match: A0A0A0L2E1 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KN K
Sbjct: 150 QDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DPTNKN+VICDE L+SI LGK KVELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match: A0A6J1HWJ0 (protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DPTNKN+VICDE L+SI LGK KVELAELPALIKLHF KNPK
Sbjct: 113 QDPTNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 155

[Close]
BLAST of Chy2G039950 vs. NCBI nr
Match: XP_038882021.1 (upstream activation factor subunit spp27 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 3.00e-17
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 170
           +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. NCBI nr
Match: XP_008449303.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449305.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.24e-17
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 170
           +DPTNKN+V+CDE LKSI LGKPKVELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. NCBI nr
Match: XP_031739586.1 (upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739588.1 upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 4.74e-16
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 170
           +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KN K
Sbjct: 58  QDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]
BLAST of Chy2G039950 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 6.68e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 170
           +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. NCBI nr
Match: XP_023545091.1 (upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545092.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545093.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545094.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 6.68e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 170
           +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Sbjct: 58  QDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]
BLAST of Chy2G039950 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DP NKN+VICDE LKSI LGK +VEL +LP+LIKLHF K  K
Sbjct: 58  QDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Chy2G039950 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK 171
           +DP NKN+VICDE LKSI LGK +VEL +LP+LIKLHF K  K
Sbjct: 58  QDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Chy2G039950 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.0e-04
Identity = 18/41 (43.90%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN 169
           ++P NK  ++CDE LK+IF GK  V   E+  L+  HF K+
Sbjct: 68  QNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of Chy2G039950 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 18/41 (43.90%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN 169
           ++P NK  + CD+ LK+IF GK KV + E+  L+  HF K+
Sbjct: 71  QNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]
BLAST of Chy2G039950 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 0 

Query: 128 KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHF 166
           +DP NK  ++CDE LK IF GK +V   E+  LI  HF
Sbjct: 106 QDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHF 143

The following BLAST results are available for this feature:
BLAST of Chy2G039950 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G039950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BL413.4e-1286.05upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221... [more]
A0A0A0L2E12.2e-1186.05SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 S... [more]
A0A6J1ELR12.9e-1183.72upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1HY334.9e-1183.72upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1HWJ04.9e-1183.72protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1[more]
BLAST of Chy2G039950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882021.13.00e-1788.37upstream activation factor subunit spp27 [Benincasa hispida][more]
XP_008449303.14.24e-1786.05PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304... [more]
XP_031739586.14.74e-1686.05upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstr... [more]
XP_022928748.16.68e-1683.72upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up... [more]
XP_023545091.16.68e-1683.72upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545... [more]
BLAST of Chy2G039950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G26810.12.8e-1169.77SWIB/MDM2 domain superfamily protein [more]
AT4G26810.22.8e-1169.77SWIB/MDM2 domain superfamily protein [more]
AT2G35605.12.0e-0443.90SWIB/MDM2 domain superfamily protein [more]
AT1G31760.14.4e-0443.90SWIB/MDM2 domain superfamily protein [more]
AT4G34290.14.4e-0450.00SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 92..170
e-value: 1.2E-8
score: 36.6
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 129..168
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 128..165
e-value: 3.0E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 129..170
NoneNo IPR availablePANTHERPTHR13844:SF45OS09G0133000 PROTEINcoord: 129..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G039950.1Chy2G039950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus