Chy2G039870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 17778545 .. 17779801 (-)
RNA-Seq Expression	Chy2G039870
Synteny	Chy2G039870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAGAAAGAGTAAGCGCTAGAGGAAAAGCTAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAAATCAATATGCTATGGATTTAGGATTTACCATGGTAACTCGATCCAGATCGAGATCGTCCGACATACAGATTGGATCTGTCACGAAGTCATCTACTTCACCAAGGCCTTTGGCCAATCTCATCTGCCCTTCTGGCGAAATTTTTCAAATGAGGCCTCCTGCCTCTCCTTTATCCAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGCTGTCACTCTCGATAAAAGGTTTGTGCCTAGACCCAAAATCAAATATTAATTATTTTTAAAAACCAGTTGTTATCTATGATCTTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAATGTCAAAAATCTTCCCTGACAACTTCAATTTCCTTCTTTATGACCTCAGAAAAACAAGAAAATTTTTATGAGTTCATTCTAGTAGACACCAAGTCCGTTGAAATAACGCATGTTCAAGACAAAAATGATTCTTCAAAGATTGCTTATTCAAAATTTAAAATTTTTAAAGCAATCAATCCAACCCACTGGAATCAAGGAATTTTTACAGAAAAATCATTTTCAAAGCCTTTTGTTCCTCAAGATTACTCTTATCAAGATTACATCAAAGTTTGGTATAGAGTATTTTGGTTTTCCAATAGGAACCATTCTTGGATCATTTCCTTTTGTCAAAACGTATAAAATCAATTTTCCTTTATGGTTCATTCAATGCTGGAATAATTTTGGTCTCACATATGACATTCTACCAACACCAATTCAATAATCTTATTTTTATTTATCGAAAATAATTTAAAAGAATTCATTCCACAATTCGATACGATTCTGCCTTTATTTTCAAATTCCATGGATATTTTGTTGGAGTTTCAATACAACTTCATATCCTCAATACAAGATGTTTTATTAAAAACTTCAAGATCAAATGGTGGGAAAAATACAACTTTCAGCATGCCACAATTAAGCACATGAAGGAATGACTCGCAGAAAACGGTTATCTCCAAGACATTGATCAAAGAAAGAACGCCGAGTTTTTAAACGACAAATCCAAGCTTCTTGCAGCACTCACTCATGCCACAACTGATGCAGATTTCCAAAGGTTACTATCAACAGCAGTAAATGCATCTTCATCTTCAAAGTCGGCAACTTCATCCATACA

mRNA sequence

ATGAGTTTAGAAAGAGTAAGCGCTAGAGGAAAAGCTAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAAATCAATATGCTATGGATTTAGGATTTACCATGGTAACTCGATCCAGATCGAGATCGTCCGACATACAGATTGGATCTGTCACGAAGTCATCTACTTCACCAAGGCCTTTGGCCAATCTCATCTGCCCTTCTGGCGAAATTTTTCAAATGAGGCCTCCTGCCTCTCCTTTATCCAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGCTGTCACTCTCGATAAAAGGTTTGTGCCTAGACCCAAAATCAAATATTAATTATTTTTAAAAACCAGTTGTTATCTATGATCTTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAATGTCAAAAATCTTCCCTGACAACTTCAATTTCCTTCTTTATGACCTCAGAAAAACAAGAAAATTTTTATGAGTTCATTCTAGTAGACACCAAGTCCGTTGAAATAACGCATGTTCAAGACAAAAATGATTCTTCAAAGATTGCTTATTCAAAATTTAAAATTTTTAAAGCAATCAATCCAACCCACTGGAATCAAGGAATTTTTACAGAAAAATCATTTTCAAAGCCTTTTGTTCCTCAAGATTACTCTTATCAAGATTACATCAAAGTTTGTTTCAATACAACTTCATATCCTCAATACAAGATGTTTTATTAAAAACTTCAAGATCAAATGGTGGGAAAAATACAACTTTCAGCATGCCACAATTAAGCACATGAAGGAATGACTCGCAGAAAACGGTTATCTCCAAGACATTGATCAAAGAAAGAACGCCGAGTTTTTAAACGACAAATCCAAGCTTCTTGCAGCACTCACTCATGCCACAACTGATGCAGATTTCCAAAGGTTACTATCAACAGCAGTAAATGCATCTTCATCTTCAAAGTCGGCAACTTCATCCATACA

Coding sequence (CDS)

ATGAGTTTAGAAAGAGTAAGCGCTAGAGGAAAAGCTAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAAATCAATATGCTATGGATTTAGGATTTACCATGGTAACTCGATCCAGATCGAGATCGTCCGACATACAGATTGGATCTGTCACGAAGTCATCTACTTCACCAAGGCCTTTGGCCAATCTCATCTGCCCTTCTGGCGAAATTTTTCAAATGAGGCCTCCTGCCTCTCCTTTATCCAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGCTGTCACTCTCGATAAAAGGTTTGTGCCTAGACCCAAAATCAAATATTAATTATTTTTAAAAACCAGTTGTTATCTATGATCTTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAATGTCAAAAATCTTCCCTGACAACTTCAATTTCCTTCTTTATGACCTCAGAAAAACAAGAAAATTTTTATGAGTTCATTCTAGTAGACACCAAGTCCGTTGAAATAACGCATGTTCAAGACAAAAATGATTCTTCAAAGATTGCTTATTCAAAATTTAAAATTTTTAAAGCAATCAATCCAACCCACTGGAATCAAGGAATTTTTACAGAAAAATCATTTTCAAAGCCTTTTGTTCCTCAAGATTACTCTTATCAAGATTACATCAAAGTTTGTTTCAATACAACTTCATATCCTCAATACAAGATGTTTTATTAAAAACTTCAAGATCAAATGGTGGGAAAAATACAACTTTCAGCATGCCACAATTAAGCACATGAAGGAATGACTCGCAGAAAACGGTTATCTCCAAGACATTGATCAAAGAAAGAACGCCGAGTTTTTAAACGACAAATCCAAGCTTCTTGCAGCACTCACTCATGCCACAACTGATGCAGATTTCCAAAGGTTACTATCAACAGCAGTAAATGCATCTTCATCTTCAAAGTCGGCAACTTCATCCATACA

Protein sequence

MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIGSVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKIKY*LFLKTSCYL*SYHRTRISKSHSRRDNVKNLP*QLQFPSL*PQKNKKIFMSSF**TPSPLK*RMFKTKMILQRLLIQNLKFLKQSIQPTGIKEFLQKNHFQSLLFLKITLIKITSKFVSIQLHILNTRCFIKNFKIKWWEKYNFQHATIKHMKE*LAENGYLQDIDQRKNAEFLNDKSKLLAALTHATTDADFQRLLSTAVNASSSSKSATSSIX

Homology

[Close]

BLAST of Chy2G039870 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ S RG+ NSTSS+GNRPSSSSNSAPSPMSA+QY MDLGFT V RSRSRSS I+  
Sbjct: 1   MSSEKGSPRGRTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTE 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRPLANLI PSG + QMRPPASP SNRESSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  SPTESSTPPRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Chy2G039870 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.4e-40
Identity = 96/121 (79.34%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ SARG+ NSTSS+G+RPSSSSNS PSPMSA QY MDLGFT+VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRP  NLI PSG + QMRPPASP SNRESSTPPTTYSQAVTLDKRFVPRP+I
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Chy2G039870 vs. ExPASy TrEMBL
Match: A0A5A7URC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00720 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-39
Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ SARG+ NSTSS+GN PSSSSNSA SPM+++QYAMDL FT VTRSRSRSS I+ G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRPLANLI PSG + QMRPP SP SNRESSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Chy2G039870 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 93/122 (76.23%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS ++ +ARG+ NSTSS+GNR SSSSNSAPSPMSA+QYAMDLGFT+VTRSRSR S I IG
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
             T+SST PRP ANLI P G + QM+PPASP SNR+SSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KY 123
           K+
Sbjct: 121 KF 122

[Close]

BLAST of Chy2G039870 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-37
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS ++ SARG+ NSTSS+GNRP SSSNSAPSP+SA+QYAMDLGFT VTR  SRS  I IG
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRP  NLI PS  + QMRPPASP SNRESSTPPTTYSQAVT DKRFVPRP+I
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Chy2G039870 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 6.87e-51
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ S RG+ NSTSS+GNRPSSSSNSAPSPMSA+QY MDLGFT V RSRSRSS I+  
Sbjct: 1   MSSEKGSPRGRTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTE 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRPLANLI PSG + QMRPPASP SNRESSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  SPTESSTPPRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

[Close]

BLAST of Chy2G039870 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 174 bits (442), Expect = 5.70e-50
Identity = 96/121 (79.34%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ SARG+ NSTSS+G+RPSSSSNS PSPMSA QY MDLGFT+VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRP  NLI PSG + QMRPPASP SNRESSTPPTTYSQAVTLDKRFVPRP+I
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

[Close]

BLAST of Chy2G039870 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 1.54e-49
Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS E+ SARG+ NSTSS+GN PSSSSNSA SPM+++QYAMDL FT VTRSRSRSS I+ G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
           S T+SST PRPLANLI PSG + QMRPP SP SNRESSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

[Close]

BLAST of Chy2G039870 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (427), Expect = 9.16e-48
Identity = 93/122 (76.23%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MSLERVSARGKANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIG 60
           MS ++ +ARG+ NSTSS+GNR SSSSNSAPSPMSA+QYAMDLGFT+VTRSRSR S I IG
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60

Query: 61  SVTKSSTSPRPLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKI 120
             T+SST PRP ANLI P G + QM+PPASP SNR+SSTPPTTYSQAVT DKRFVPRPKI
Sbjct: 61  FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KY 122
           K+
Sbjct: 121 KF 122

[Close]

BLAST of Chy2G039870 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 166 bits (419), Expect = 1.12e-46
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 11  KANSTSSRGNRPSSSSNSAPSPMSANQYAMDLGFTMVTRSRSRSSDIQIGSVTKSSTSPR 70
           +ANSTSSRGNRPSSSSNSAPSPMSA+QYAMDLGFT VTRSR+RSS IQIGS TKSST PR
Sbjct: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60

Query: 71  PLANLICPSGEIFQMRPPASPLSNRESSTPPTTYSQAVTLDKRFVPRPKIK 121
             ANLI PS E+ QMRP ASPLSNRESSTPPTTYSQ +T DKRFVPR +IK
Sbjct: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIK 111

The following BLAST results are available for this feature:

BLAST of Chy2G039870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G039870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKX1	2.0e-40	80.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCE6	4.4e-40	79.34	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7URC1	2.2e-39	78.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E4J4	3.2e-38	76.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	3.5e-37	76.03	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Chy2G039870 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11076.1	6.87e-51	80.17	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]
ADN34145.1	5.70e-50	79.34	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0056175.1	1.54e-49	78.51	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]
KAA0026217.1	9.16e-48	76.23	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]
KAE8646253.1	1.12e-46	82.88	hypothetical protein Csa_023844, partial [Cucumis sativus]	[more]

BLAST of Chy2G039870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039870.1	Chy2G039870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding