Chy2G039840 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039840
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Polygalacturonase
Location	chrH02: 17682883 .. 17684085 (-)
RNA-Seq Expression	Chy2G039840
Synteny	Chy2G039840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTCGCGGACGAGAAGAAGGCGAGATCAGATGGAGACACGAAGCAAAGAGAAAAAAAATGTGGCGACTGGCAATTAGTGTCTCCTAGGCTTCGTCTGGGCATGTGACAGATAAAGAGGAATAAGGCCAAACGAATGGTGACGCTACCAGTGTGCTGCGTGCGGCGGAGGTGGCTGGAGAAAGGGGCGGCGGCTAGGATTGGTTGAGGAGAAGAACATTGGAGAAGATGATGGTACGCTTCACGATGGGTCCTATTAATAATAATAACAATAATAATATTGTTATTATTTCAATTTTTCTTTTCCTTTTCTTTTTTCCAAAAAAACAACCCAAATAAATCATACTCTCTTTCTTCATTAATTATCCATCAATTCCAACTTTTATCTCTCTTTTTTATCTTCTCAAAATGATCCTTATTAATTATATTACTCCAAATAATATAATTTTCTCAACATTCCATAATTTTAAATATACAAAAACACATAATTTACTCCAAAATCCTTAAATGATTATATCATTTTAACATAATTATTTTCATTCCAAAATTACCTAAATTAAATTAATAAAGTCCAAATAAAATCTATCTTAATTTAAATTCAATTTAGATAATTAAATGTAAAATTACCTTAAACTTTAGGATGTTACAACAACTTTATCGTATCAGTTTCACATTTATATTTTTGTTCTTTCTTAGATGATCCTATAAATACTATCAAAAATTTCTTCATTCCATAAAATTATATTTCTATTTTCTCATCATTGTTCTCTCTCTCATTCACACAAATTTAAGCATTTGAAAAGAAAATTTGATTAAGATGATGATCATCCTATTTGAGAAGAGGAGTACTTTGATTCTATTTATTGTATTAGTAACATTGATGGATTTTTGTATTTTTGGTAACACATGGTCTTACAATGTTGTTAGCTTTGGAGACAAAGATGATGGAAGAATGGACTCATTTCAAACTGTTTGGTCTAATGCTTGTGCCTCCACAAAACCAGCCACGATTTATGTATCACGAGGAAGATACTATCTTCGCTCTAGAACTTTTAATGGACCTTGCAAAAATAATGCAATCTTTATCTGCATTGATGACACTTTGGTGGCTCCTTCTGACTTTCAAGTTATTGAGAACTCTGTAGCTTGGATTGCTTTTAGGCACGTCGATGGAGTTACCGTCTCAGGTGGCAATCCTTAA

mRNA sequence

ATGGGGCTCGCGGACGAGAAGAAGGCGAGATCAGATGGAGACACGAAGCAAAGAGAAAAAAAATGTGGCGACTGGCAATTAGTGTCTCCTAGGCTTCGTCTGGGCATCTTTGGAGACAAAGATGATGGAAGAATGGACTCATTTCAAACTGTTTGGTCTAATGCTTGTGCCTCCACAAAACCAGCCACGATTTATGTATCACGAGGAAGATACTATCTTCGCTCTAGAACTTTTAATGGACCTTGCAAAAATAATGCAATCTTTATCTGCATTGATGACACTTTGGTGGCTCCTTCTGACTTTCAAGTTATTGAGAACTCTGTAGCTTGGATTGCTTTTAGGCACGTCGATGGAGTTACCGTCTCAGGTGGCAATCCTTAA

Coding sequence (CDS)

ATGGGGCTCGCGGACGAGAAGAAGGCGAGATCAGATGGAGACACGAAGCAAAGAGAAAAAAAATGTGGCGACTGGCAATTAGTGTCTCCTAGGCTTCGTCTGGGCATCTTTGGAGACAAAGATGATGGAAGAATGGACTCATTTCAAACTGTTTGGTCTAATGCTTGTGCCTCCACAAAACCAGCCACGATTTATGTATCACGAGGAAGATACTATCTTCGCTCTAGAACTTTTAATGGACCTTGCAAAAATAATGCAATCTTTATCTGCATTGATGACACTTTGGTGGCTCCTTCTGACTTTCAAGTTATTGAGAACTCTGTAGCTTGGATTGCTTTTAGGCACGTCGATGGAGTTACCGTCTCAGGTGGCAATCCTTAA

Protein sequence

MGLADEKKARSDGDTKQREKKCGDWQLVSPRLRLGIFGDKDDGRMDSFQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDDTLVAPSDFQVIENSVAWIAFRHVDGVTVSGGNP*

Homology

[Close]

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-22
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 38  GDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDDT 97
           G K DG+ DS   F + W+ ACAS  P  IYV  G ++LR   F+GPCKNNAI   I  T
Sbjct: 34  GAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGT 93

Query: 98  LVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
           LVAPSD++VI N+  WI F HV+GVT+SGG
Sbjct: 94  LVAPSDYRVIGNAANWIFFHHVNGVTISGG 123

[Close]

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-12
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNG-PCKNNAIFICID 96
           +G K DG  DS   F   W  ACAS  P TI V +GR+ + +  F+G  CK   I I I 
Sbjct: 38  YGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIA 97

Query: 97  DTLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
            ++VAP DF++I +S  WI F  V  V++ GG
Sbjct: 98  GSIVAPEDFRIIASSKHWIWFEDVTDVSIYGG 129

[Close]

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 32  LRLGIFGDKDDGRM-DSFQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFIC 91
           L +  FG K +  +  +  + W+ ACAST  A I +  G Y L      GPCK   I + 
Sbjct: 25  LDISKFGGKPNSDIGQALTSAWNEACASTTAAKIVIPAGTYQLNGIELKGPCK-APIELQ 84

Query: 92  IDDTLVAPSDFQVIENSVAWIAFRHVDGVTVSG 124
           +D T+ AP+D  VI+ +  W  F ++D +T+SG
Sbjct: 85  VDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSG 116

[Close]

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 37  FGDKDDGRM-DSFQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDDTL 96
           +G K  G +  +    W  ACAS  P+T+ + +G Y +      GPCK + I   ID  +
Sbjct: 15  YGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIGFQIDGVV 74

Query: 97  VAPSDFQVIENSVAWIAFRHVDGVTVSG 124
            AP+D    + S  W++F  +DG+TVSG
Sbjct: 75  KAPADPSKFK-SDGWVSFYRIDGLTVSG 101

[Close]

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 32/91 (35.16%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 37  FGDKDDGRMD---SFQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DG+ D    F   W  ACAS  P+T+ + +G Y L      GPCK   I I +  
Sbjct: 35  FGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCK-APIEINVQG 94

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
           T+ AP+D    ++   W+ F  V+   + GG
Sbjct: 95  TIQAPADPSAFKDP-NWVRFYSVENFKMFGG 123

[Close]

BLAST of Chy2G039840 vs. ExPASy TrEMBL
Match: A0A0A0LCE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G629740 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 76/92 (82.61%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 37  FGAKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 96

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 126
           TLVAPSDFQVI NS AW+ FRHVDGVT+SGGN
Sbjct: 97  TLVAPSDFQVIGNSAAWVVFRHVDGVTISGGN 128

[Close]

BLAST of Chy2G039840 vs. ExPASy TrEMBL
Match: A0A5A7TUJ2 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001030 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNAC+STKPATIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACSSTKPATIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 126
           TLVAPSDFQVI NS AWIAFR+VDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIAFRNVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. ExPASy TrEMBL
Match: E5GBC3 (Polygalacturonase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNAC+STKPATIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACSSTKPATIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 126
           TLVAPSDFQVI NS AWIAFR+VDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIAFRNVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. ExPASy TrEMBL
Match: A0A5A7VKX0 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00120 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.2e-35
Identity = 77/92 (83.70%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS  FNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGIFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 126
           TLVAPSDFQVI NS AWI FRHVDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIIFRHVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. ExPASy TrEMBL
Match: A0A5D3C3E8 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001500 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.2e-35
Identity = 77/92 (83.70%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS  FNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGIFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 126
           TLVAPSDFQVI NS AWI FRHVDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIIFRHVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. NCBI nr
Match: ADN33764.1 (polygalacturonase [Cucumis melo subsp. melo])

HSP 1 Score: 157 bits (397), Expect = 2.58e-44
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNAC+STKPATIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACSSTKPATIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 125
           TLVAPSDFQVI NS AWIAFR+VDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIAFRNVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. NCBI nr
Match: XP_011652824.2 (polygalacturonase [Cucumis sativus] >KAE8650860.1 hypothetical protein Csa_002650 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 8.80e-44
Identity = 76/92 (82.61%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 38  FGAKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 97

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 125
           TLVAPSDFQVI NS AW+ FRHVDGVT+SGGN
Sbjct: 98  TLVAPSDFQVIGNSAAWVVFRHVDGVTISGGN 129

[Close]

BLAST of Chy2G039840 vs. NCBI nr
Match: XP_011652823.2 (polygalacturonase [Cucumis sativus] >KAE8650851.1 hypothetical protein Csa_001451 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 8.80e-44
Identity = 76/92 (82.61%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 38  FGAKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 97

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 125
           TLVAPSDFQVI NS AW+ FRHVDGVT+SGGN
Sbjct: 98  TLVAPSDFQVIGNSAAWVVFRHVDGVTISGGN 129

[Close]

BLAST of Chy2G039840 vs. NCBI nr
Match: KAA0046810.1 (polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 1.26e-43
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNAC+STKPATIYV RGRYYLRS TFNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACSSTKPATIYVPRGRYYLRSGTFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 125
           TLVAPSDFQVI NS AWIAFR+VDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIAFRNVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. NCBI nr
Match: KAA0068064.1 (polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 6.96e-43
Identity = 77/92 (83.70%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   FQTVWSNACASTKP TIYV RGRYYLRS  FNGPCKNNAIFI ID 
Sbjct: 39  FGGKGDGRTDSTQAFQTVWSNACASTKPTTIYVPRGRYYLRSGIFNGPCKNNAIFIRIDG 98

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGGN 125
           TLVAPSDFQVI NS AWI FRHVDGVTVSGGN
Sbjct: 99  TLVAPSDFQVIGNSPAWIIFRHVDGVTVSGGN 130

[Close]

BLAST of Chy2G039840 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-21
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 37  FGDKDDGRMD---SFQTVWSNACASTKPATIYVSRGRYYLRSRTFNG-PCKNNAIFICID 96
           FG K DG+ D   +F  VW  ACAS++P TI V +GR+ LRS TF+G  CK   +   ID
Sbjct: 26  FGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRFLLRSVTFDGSKCKPKPVTFRID 85

Query: 97  DTLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
            TLVAP+D++VI N   WI F+H+DG+TV GG
Sbjct: 86  GTLVAPADYRVIGNEDYWIFFQHLDGITVYGG 117

[Close]

BLAST of Chy2G039840 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-19
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNG-PCKNNAIFICID 96
           +G K DG+ DS   F  +W+ ACAS KP TI V +GR+ LRS  F+G  CK  ++   I 
Sbjct: 28  YGAKPDGKTDSTKAFTVLWAKACASVKPVTILVPKGRFLLRSIIFDGSKCKRKSVTFRIQ 87

Query: 97  DTLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
            TLVAPSD++VI     WI F+H+DG++V GG
Sbjct: 88  GTLVAPSDYRVIGKENYWILFQHLDGISVYGG 119

[Close]

BLAST of Chy2G039840 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-15
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 30  PRLRLGIFGDKDDGRMD---SFQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNA 89
           P   +  +G + DGR D   SF T WS AC S   A +YV RG Y +++  F GPCK N 
Sbjct: 29  PSFNVQRYGARGDGRADATKSFLTAWSLACGSRARAMVYVPRGTYLVKNLVFWGPCK-NI 88

Query: 90  IFICIDDTLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
           I    D TLVAP+++  I NS  WI F  V+ ++V GG
Sbjct: 89  ITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYGG 125

[Close]

BLAST of Chy2G039840 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNG-PCKNNAIFICID 96
           +G K DG  DS   F   W  ACAS  P TI V +GR+ + +  F+G  CK   I I I 
Sbjct: 38  YGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIA 97

Query: 97  DTLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
            ++VAP DF++I +S  WI F  V  V++ GG
Sbjct: 98  GSIVAPEDFRIIASSKHWIWFEDVTDVSIYGG 129

[Close]

BLAST of Chy2G039840 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-13
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 37  FGDKDDGRMDS---FQTVWSNACASTKPATIYVSRGRYYLRSRTFNGPCKNNAIFICIDD 96
           FG K DGR DS   F   W  AC S    T+ V RG + L+   F GPC++   F  I  
Sbjct: 34  FGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEFRGPCRSRITF-QIYG 93

Query: 97  TLVAPSDFQVIENSVAWIAFRHVDGVTVSGG 125
           T+VAPSD++ + NS  WI F  V+ +++ GG
Sbjct: 94  TIVAPSDYRGLGNSGYWILFVKVNRISIIGG 123

The following BLAST results are available for this feature:

BLAST of Chy2G039840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	3.4e-22	55.56	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	1.9e-12	42.39	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q40312	1.9e-09	35.48	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
Q6H9K0	2.5e-09	35.23	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
Q39766	3.6e-08	35.16	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]

BLAST of Chy2G039840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCE1	1.2e-35	82.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G629740 PE=3 SV=1	[more]
A0A5A7TUJ2	1.6e-35	84.78	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00...	[more]
E5GBC3	1.6e-35	84.78	Polygalacturonase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7VKX0	6.2e-35	83.70	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00...	[more]
A0A5D3C3E8	6.2e-35	83.70	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00...	[more]

BLAST of Chy2G039840 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33764.1	2.58e-44	84.78	polygalacturonase [Cucumis melo subsp. melo]	[more]
XP_011652824.2	8.80e-44	82.61	polygalacturonase [Cucumis sativus] >KAE8650860.1 hypothetical protein Csa_00265...	[more]
XP_011652823.2	8.80e-44	82.61	polygalacturonase [Cucumis sativus] >KAE8650851.1 hypothetical protein Csa_00145...	[more]
KAA0046810.1	1.26e-43	84.78	polygalacturonase [Cucumis melo var. makuwa]	[more]
KAA0068064.1	6.96e-43	83.70	polygalacturonase [Cucumis melo var. makuwa]	[more]

BLAST of Chy2G039840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43870.1	3.8e-21	52.17	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	2.1e-19	48.91	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	3.1e-15	43.88	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	1.3e-13	42.39	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	3.8e-13	41.76	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 35..125 e-value: 1.8E-10 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 36..124
None	No IPR available	PANTHER	PTHR31375:SF206	PUTATIVE-RELATED	coord: 36..124
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 38..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039840.1	Chy2G039840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004650	polygalacturonase activity