Chy2G039730 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039730
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L21-1
Location	chrH02: 17343615 .. 17344189 (-)
RNA-Seq Expression	Chy2G039730
Synteny	Chy2G039730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCATAAATTTTACCACAGTCGCACGACTCACGTATGGAATGTTACAAAGCTTGCCATCGGCTTCGAGATCGACAAGTAGGTTCAGGATTCTTTTTTAAGATCTATTCTAGTTTTTAGAATGTATTTGAATCTTATGATTTAGGGTAATAGATTGTGTTTGATTTTTATAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTTGTTAGTTTGATGGGCTTTGGAATTTGATGAGAGAAAGTTTCATTATGATTTGGACTCTTTTTCTTATTAAATTTGTGATGTTCAGATATGGATTTTACAGGTCGGGAATAAAATTATTAAGAAGAGAATTCATGTCGGAGTCTAGCACGTACAACCTTCTCGCTGCATCGAAGAATTTCGCTTGAGGAAGGTGAAAATGACGAGTTGAAGCCTGAATCCAAGGCCAAAGGTGTAATCATCTGCACCAAGAGGCAACCGAAAGGACCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGACACTGTGACTCCCATTCCATACGATATAGTTAATGATCTCAAGGGTGGCTATTAG

mRNA sequence

ATGCCTCATAAATTTTACCACAGTCGCACGACTCACGTATGGAATGTTACAAAGCTTGCCATCGGCTTCGAGATCGACAAATATGGATTTTACAGGTCGGGAATAAAATTATTAAGAAGAGAATTCATGTCGGAGTCTAGCACAATTTCGCTTGAGGAAGGTGAAAATGACGAGTTGAAGCCTGAATCCAAGGCCAAAGGTGTAATCATCTGCACCAAGAGGCAACCGAAAGGACCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGACACTGTGACTCCCATTCCATACGATATAGTTAATGATCTCAAGGGTGGCTATTAG

Coding sequence (CDS)

ATGCCTCATAAATTTTACCACAGTCGCACGACTCACGTATGGAATGTTACAAAGCTTGCCATCGGCTTCGAGATCGACAAATATGGATTTTACAGGTCGGGAATAAAATTATTAAGAAGAGAATTCATGTCGGAGTCTAGCACAATTTCGCTTGAGGAAGGTGAAAATGACGAGTTGAAGCCTGAATCCAAGGCCAAAGGTGTAATCATCTGCACCAAGAGGCAACCGAAAGGACCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGACACTGTGACTCCCATTCCATACGATATAGTTAATGATCTCAAGGGTGGCTATTAG

Protein sequence

MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRREFMSESSTISLEEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY*

Homology

[Close]

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 4.2e-29
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +NDELK  +KA G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.5e-29
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +ND LK ++KA+G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.1e-08
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL------RREFMSESSTISL--- 60
           MPHKFYH RT  VWNVT  A+G  I+K    R G +++      R E +  S++++    
Sbjct: 52  MPHKFYHGRTGRVWNVTPRAVGVIINK----RVGPRIIAKKIHVRTEHVKPSNSMAAHLK 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMD--TVTPIPYDIV 102
              EN +   E+K  G  +  +R P  PK GF V     +   V P+ Y+++
Sbjct: 112 RIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot
Match: Q6QN05 (60S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYG-----FYRSGIKLLRREFMSESSTISLEEGE 60
           MPHK YH +T  V+NVT+ A+G  ++K         R  +++   +      +      E
Sbjct: 52  MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMV--EGALMDTVTPIPYDIV 102
           ND+ K E+K KG  +  KRQP  P+    V   G   + + PIPY+ +
Sbjct: 112 NDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159

[Close]

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSESS---TISLEEGE 60
           MP K+YH RT  VWNVTK AIG EI+K   +R   K +  R + + +SS   +      E
Sbjct: 52  MPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKE 111

Query: 61  NDELKPESK-AKGVIICTKRQPKGPKPGFMV--EGALMDTVTPIPYD 100
           ND++K ++  AK  +  TKR P  PK G ++  +G + +T   IPY+
Sbjct: 112 NDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Chy2G039730 vs. ExPASy TrEMBL
Match: A0A5D3DP20 (60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005180 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
           NDELK E+KAKGV+ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy TrEMBL
Match: A0A1S3B7V0 (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
           NDELK E+KAKGV+ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy TrEMBL
Match: A0A0A0LEZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 73/113 (64.60%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
           NDELK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.7e-30
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRREFMSE---------SSTISL 60
           MPHKFYH RT  VWNVTK AIG EI+K    + G +++R+              +    L
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINK----QVGNRIIRKRIHVRVEHVQPSRCAEEFRL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +ND+LK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 RKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.7e-30
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRREFMSE---------SSTISL 60
           MPHKFYH RT  VWNVTK AIG EI+K    + G +++R+              +    L
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINK----QVGNRIIRKRIHVRVEHVQPSRCAEEFCL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +ND+LK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 RKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. NCBI nr
Match: XP_004140433.3 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal protein L21-1-like [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 8.88e-40
Identity = 74/113 (65.49%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E M  S       L + +
Sbjct: 52  MPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHMQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 108
           NDELK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 8.88e-40
Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 108
           NDELK E+KAKGV+ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. NCBI nr
Match: XP_031739289.1 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal protein L21-1 [Cucumis sativus] >XP_031745254.1 60S ribosomal protein L21-1 [Cucumis sativus] >KAE8651128.1 hypothetical protein Csa_001407 [Cucumis sativus] >KGN43674.2 hypothetical protein Csa_017109 [Cucumis sativus])

HSP 1 Score: 138 bits (348), Expect = 3.60e-39
Identity = 73/113 (64.60%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 108
           NDELK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 137 bits (346), Expect = 7.23e-39
Identity = 73/113 (64.60%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLL--RREFMSES---STISLEEGE 60
           MPHKFYH RT  VWNVTK AIG EI+K    R   K +  R E +  S       L + +
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 108
           NDELK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 NDELKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. NCBI nr
Match: XP_022983129.1 (60S ribosomal protein L21-1-like [Cucurbita maxima])

HSP 1 Score: 137 bits (345), Expect = 1.03e-38
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRREFMSESSTIS---------L 60
           MPHKFYH RT  VWNVTK AIG EI+K    + G +++R+        +          L
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINK----QVGNRIIRKRIHVRVEHVQPSRCAEEFCL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 108
            + +ND+LK E+KAKG +ICTKRQP+GPKPGFMVEGALM+TVTPIPYD+VNDLKGGY
Sbjct: 112 RKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-30
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +NDELK  +KA G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-30
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +NDELK  +KA G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-30
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +ND LK ++KA+G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Chy2G039730 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-30
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MPHKFYHSRTTHVWNVTKLAIGFEIDKYGFYRSGIKLLRR------EFMSES---STISL 60
           MPHKFYH RT  +WNVTK A+G E++K    + G +++R+      E + +S       L
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNK----QIGNRIIRKRIHVRVEHVQQSRCAEEFKL 111

Query: 61  EEGENDELKPESKAKGVIICTKRQPKGPKPGFMVEGALMDTVTPIPYDIVNDLKGGY 109
            + +ND LK ++KA+G  I TKRQPKGPKPGFMVEG  ++TVTPIPYD+VNDLKGGY
Sbjct: 112 RKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of Chy2G039730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	4.2e-29	54.70	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	5.5e-29	53.85	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q54X53	9.1e-08	33.93	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]
Q6QN05	1.2e-07	31.48	60S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3	[more]
O82574	1.2e-07	39.25	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]

BLAST of Chy2G039730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP20	1.3e-30	65.49	60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B7V0	1.3e-30	65.49	60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1	[more]
A0A0A0LEZ0	3.9e-30	64.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1	[more]
A0A6J1IYF0	6.7e-30	58.97	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1J6F8	6.7e-30	58.97	60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=...	[more]

BLAST of Chy2G039730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140433.3	8.88e-40	65.49	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal prot...	[more]
XP_008443016.1	8.88e-40	65.49	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]
XP_031739289.1	3.60e-39	64.60	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal prot...	[more]
XP_038906379.1	7.23e-39	64.60	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_022983129.1	1.03e-38	58.97	60S ribosomal protein L21-1-like [Cucurbita maxima]	[more]

BLAST of Chy2G039730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	3.0e-30	54.70	Translation protein SH3-like family protein	[more]
AT1G09690.1	3.0e-30	54.70	Translation protein SH3-like family protein	[more]
AT1G57660.1	3.9e-30	53.85	Translation protein SH3-like family protein	[more]
AT1G57860.1	3.9e-30	53.85	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..46 e-value: 5.2E-5 score: 25.2
None	No IPR available	GENE3D	6.10.250.3260		coord: 51..100 e-value: 1.3E-15 score: 59.1
None	No IPR available	PANTHER	PTHR20981:SF27	TRANSLATION PROTEIN SH3-LIKE FAMILY PROTEIN-RELATED	coord: 1..108
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..27 e-value: 4.1E-5 score: 23.4
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039730.1	Chy2G039730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome