Chy2G039710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DsbD_2 domain-containing protein
Location	chrH02: 17324747 .. 17325368 (-)
RNA-Seq Expression	Chy2G039710
Synteny	Chy2G039710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCTGTGCTGCTATTCTGGTCTTGATCCAATCAGTTTTTGCACATTCAGCTTTTGCCTACTCTGTAGCTACAACTAGGGGTCCATCGACTGCCACCTTCGGAGGAAAATTTTTCCGATCTGAACTATTGAGCAGTGCTTGGACTAGTTTCTTTGCCAGATGTTTACACACATTATATGGGCTGGACCATCTTACGGCTTTGGCTCCTCTTTCCATTGGGCGTACTCACATGGAAAGTGCTGCATTTGGAGCTCTTTGGGGTTGTGGCCATGATGTAGGCCAGGTTATCTTCATATTTCTTCTATTGAAAGATCAGCTTCATATTGAAATTATTCATACTTGGGGCACAAGAGTCATTGGTATTACTCTGCTTGTAATCGATGACAATTTGAATCGTGTGTGATTGAGGTATTAATGATGCAGGCCAATTTATCTGTTTGTTTATTTGACTGCCTTTGTTTTAAGATTGATTTGATATTGATGTAGGCCAGGTTATCTTGAGAGAGCAAAGCTCTAGTGGAAGGGAATGCAGAGAAGATGAATTTGAGATTGATATTGATGATCTCAGTGATGATACACTTTTCAAATTACGGAAGCTACTAGGTGATCATTTTTAG

mRNA sequence

ATGGCACTCTGTGCTGCTATTCTGGTCTTGATCCAATCAGTTTTTGCACATTCAGCTTTTGCCTACTCTGTAGCTACAACTAGGGGTCCATCGACTGCCACCTTCGGAGGAAAATTTTTCCGATCTGAACTATTGAGCAGTGCTTGGACTAGTTTCTTTGCCAGATGTTTACACACATTATATGGGCTGGACCATCTTACGGCTTTGGCTCCTCTTTCCATTGGGCGTACTCACATGGAAAGTGCTGCATTTGGAGCTCTTTGGGGTTGTGGCCATGATGTAGGCCAGGTTATCTTGAGAGAGCAAAGCTCTAGTGGAAGGGAATGCAGAGAAGATGAATTTGAGATTGATATTGATGATCTCAGTGATGATACACTTTTCAAATTACGGAAGCTACTAGGTGATCATTTTTAG

Coding sequence (CDS)

ATGGCACTCTGTGCTGCTATTCTGGTCTTGATCCAATCAGTTTTTGCACATTCAGCTTTTGCCTACTCTGTAGCTACAACTAGGGGTCCATCGACTGCCACCTTCGGAGGAAAATTTTTCCGATCTGAACTATTGAGCAGTGCTTGGACTAGTTTCTTTGCCAGATGTTTACACACATTATATGGGCTGGACCATCTTACGGCTTTGGCTCCTCTTTCCATTGGGCGTACTCACATGGAAAGTGCTGCATTTGGAGCTCTTTGGGGTTGTGGCCATGATGTAGGCCAGGTTATCTTGAGAGAGCAAAGCTCTAGTGGAAGGGAATGCAGAGAAGATGAATTTGAGATTGATATTGATGATCTCAGTGATGATACACTTTTCAAATTACGGAAGCTACTAGGTGATCATTTTTAG

Protein sequence

MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVILREQSSSGRECREDEFEIDIDDLSDDTLFKLRKLLGDHF*

Homology

[Close]

BLAST of Chy2G039710 vs. ExPASy TrEMBL
Match: A0A0A0LJG9 (DsbD_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270810 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.6e-36
Identity = 83/98 (84.69%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
           MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 108 MALCVAILVLIQPVFAPSAFAYSAATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 167

Query: 61  YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
            G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI
Sbjct: 168 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVI 205

[Close]

BLAST of Chy2G039710 vs. ExPASy TrEMBL
Match: A0A5A7TQT9 (NicO domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001080 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.9e-36
Identity = 83/98 (84.69%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
           MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 108 MALCVAILVLIQPVFAPSAFAYSPATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 167

Query: 61  YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
            G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI
Sbjct: 168 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVI 205

[Close]

BLAST of Chy2G039710 vs. ExPASy TrEMBL
Match: A0A1S3C5P9 (uncharacterized protein LOC103497337 OS=Cucumis melo OX=3656 GN=LOC103497337 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.9e-36
Identity = 83/98 (84.69%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
           MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 108 MALCVAILVLIQPVFAPSAFAYSPATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 167

Query: 61  YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
            G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI
Sbjct: 168 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVI 205

[Close]

BLAST of Chy2G039710 vs. ExPASy TrEMBL
Match: A0A6J1CXD6 (uncharacterized protein LOC111015458 OS=Momordica charantia OX=3673 GN=LOC111015458 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.3e-33
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFA--YSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLH 60
           MALC A+L+LIQ VFA SAFA   S ATT GP+ ATFGG+FFRSELLSSAWT FFA CLH
Sbjct: 111 MALCVAVLILIQPVFAPSAFASFNSAATTGGPAAATFGGRFFRSELLSSAWTGFFAGCLH 170

Query: 61  TLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           TL G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI
Sbjct: 171 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVI 210

[Close]

BLAST of Chy2G039710 vs. ExPASy TrEMBL
Match: A0A6J1I271 (uncharacterized protein LOC111469828 OS=Cucurbita maxima OX=3661 GN=LOC111469828 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFA--YSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLH 60
           MALC A+L L+Q VFA SAFA  +  ATT GP+ ATFGG+FFRSELL SAWT FFA CLH
Sbjct: 108 MALCVAVLFLLQPVFAPSAFASFHPAATTGGPAAATFGGRFFRSELLISAWTGFFAGCLH 167

Query: 61  TLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           TL G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI
Sbjct: 168 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVI 207

[Close]

BLAST of Chy2G039710 vs. NCBI nr
Match: KAE8651901.1 (hypothetical protein Csa_006360 [Cucumis sativus])

HSP 1 Score: 161 bits (408), Expect = 1.93e-46
Identity = 83/99 (83.84%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1  MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
          MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 1  MALCVAILVLIQPVFAPSAFAYSAATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 60

Query: 61 YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVIL 99
           G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI 
Sbjct: 61 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIF 99

[Close]

BLAST of Chy2G039710 vs. NCBI nr
Match: XP_004147045.1 (uncharacterized protein LOC101219983 [Cucumis sativus])

HSP 1 Score: 161 bits (408), Expect = 2.75e-45
Identity = 83/99 (83.84%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
           MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 108 MALCVAILVLIQPVFAPSAFAYSAATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 167

Query: 61  YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVIL 99
            G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI 
Sbjct: 168 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIF 206

[Close]

BLAST of Chy2G039710 vs. NCBI nr
Match: XP_008457702.1 (PREDICTED: uncharacterized protein LOC103497337 [Cucumis melo] >KAA0045742.1 NicO domain-containing protein [Cucumis melo var. makuwa] >TYJ99540.1 NicO domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 5.46e-45
Identity = 83/99 (83.84%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTL 60
           MALC AILVLIQ VFA SAFAYS ATT GPS ATFGG+FFRSELLSSAWT FFA CLHTL
Sbjct: 108 MALCVAILVLIQPVFAPSAFAYSPATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTL 167

Query: 61  YGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVIL 99
            G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI 
Sbjct: 168 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIF 206

[Close]

BLAST of Chy2G039710 vs. NCBI nr
Match: XP_022146179.1 (uncharacterized protein LOC111015458 [Momordica charantia])

HSP 1 Score: 151 bits (381), Expect = 3.13e-41
Identity = 79/101 (78.22%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFAY--SVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLH 60
           MALC A+L+LIQ VFA SAFA   S ATT GP+ ATFGG+FFRSELLSSAWT FFA CLH
Sbjct: 111 MALCVAVLILIQPVFAPSAFASFNSAATTGGPAAATFGGRFFRSELLSSAWTGFFAGCLH 170

Query: 61  TLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVIL 99
           TL G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI 
Sbjct: 171 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIF 211

[Close]

BLAST of Chy2G039710 vs. NCBI nr
Match: XP_022971036.1 (uncharacterized protein LOC111469828 [Cucurbita maxima])

HSP 1 Score: 146 bits (368), Expect = 2.48e-39
Identity = 76/101 (75.25%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MALCAAILVLIQSVFAHSAFA--YSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLH 60
           MALC A+L L+Q VFA SAFA  +  ATT GP+ ATFGG+FFRSELL SAWT FFA CLH
Sbjct: 108 MALCVAVLFLLQPVFAPSAFASFHPAATTGGPAAATFGGRFFRSELLISAWTGFFAGCLH 167

Query: 61  TLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVIL 99
           TL G DHL ALAPLSIGRT MESAA GALWGCGHD GQVI 
Sbjct: 168 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIF 208

[Close]

BLAST of Chy2G039710 vs. TAIR 10
Match: AT2G16800.1 (high-affinity nickel-transport family protein )

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-24
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 5   AAILVLIQSVFAHSAFAYSVATTRGPSTATFGGKFFRSELLSSAWTSFFARCLHTLYGLD 64
           A   +L+  +    AFA     T     A  GGK  R+E+L+SAWT FFA CLHTL G D
Sbjct: 114 AIAALLLNPILVPPAFASFQTATNSGGAAVVGGKLLRTEVLTSAWTGFFAGCLHTLSGPD 173

Query: 65  HLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           HL ALAPLSIGRT MESAA GALWGCGHD GQ+I
Sbjct: 174 HLAALAPLSIGRTRMESAAVGALWGCGHDAGQLI 207

[Close]

BLAST of Chy2G039710 vs. TAIR 10
Match: AT4G35080.1 (high-affinity nickel-transport family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 41  RSELLSSAWTSFFARCLHTLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           +S  L+SAWT F A CLHTL G DHL ALAPLSIGR+ MESAA GALWGCGHD GQVI
Sbjct: 137 KSGWLTSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSKMESAAVGALWGCGHDAGQVI 194

[Close]

BLAST of Chy2G039710 vs. TAIR 10
Match: AT4G35080.2 (high-affinity nickel-transport family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 41  RSELLSSAWTSFFARCLHTLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           +S  L+SAWT F A CLHTL G DHL ALAPLSIGR+ MESAA GALWGCGHD GQVI
Sbjct: 137 KSGWLTSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSKMESAAVGALWGCGHDAGQVI 194

[Close]

BLAST of Chy2G039710 vs. TAIR 10
Match: AT4G35080.3 (high-affinity nickel-transport family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 41  RSELLSSAWTSFFARCLHTLYGLDHLTALAPLSIGRTHMESAAFGALWGCGHDVGQVI 99
           +S  L+SAWT F A CLHTL G DHL ALAPLSIGR+ MESAA GALWGCGHD GQVI
Sbjct: 161 KSGWLTSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSKMESAAVGALWGCGHDAGQVI 218

[Close]

BLAST of Chy2G039710 vs. TAIR 10
Match: AT5G63320.1 (nuclear protein X1 )

HSP 1 Score: 44.3 bits (103), Expect = 9.3e-05
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 98  ILREQSSSGRECREDEFEIDIDDLSDDTLFKLRKLLGDH 137
           +LREQS S  +  E E EIDI+ LSD+ LF +RKLL D+
Sbjct: 340 LLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLLDDY 378

The following BLAST results are available for this feature:

BLAST of Chy2G039710 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G039710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJG9	4.6e-36	84.69	DsbD_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270810 PE=4...	[more]
A0A5A7TQT9	7.9e-36	84.69	NicO domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3C5P9	7.9e-36	84.69	uncharacterized protein LOC103497337 OS=Cucumis melo OX=3656 GN=LOC103497337 PE=...	[more]
A0A6J1CXD6	6.3e-33	79.00	uncharacterized protein LOC111015458 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1I271	2.0e-31	76.00	uncharacterized protein LOC111469828 OS=Cucurbita maxima OX=3661 GN=LOC111469828...	[more]

BLAST of Chy2G039710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651901.1	1.93e-46	83.84	hypothetical protein Csa_006360 [Cucumis sativus]	[more]
XP_004147045.1	2.75e-45	83.84	uncharacterized protein LOC101219983 [Cucumis sativus]	[more]
XP_008457702.1	5.46e-45	83.84	PREDICTED: uncharacterized protein LOC103497337 [Cucumis melo] >KAA0045742.1 Nic...	[more]
XP_022146179.1	3.13e-41	78.22	uncharacterized protein LOC111015458 [Momordica charantia]	[more]
XP_022971036.1	2.48e-39	75.25	uncharacterized protein LOC111469828 [Cucurbita maxima]	[more]

BLAST of Chy2G039710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16800.1	1.8e-24	59.57	high-affinity nickel-transport family protein	[more]
AT4G35080.1	1.8e-19	75.86	high-affinity nickel-transport family protein	[more]
AT4G35080.2	1.8e-19	75.86	high-affinity nickel-transport family protein	[more]
AT4G35080.3	1.8e-19	75.86	high-affinity nickel-transport family protein	[more]
AT5G63320.1	9.3e-05	56.41	nuclear protein X1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027353	NET domain	PFAM	PF17035	BET	coord: 98..133 e-value: 1.2E-6 score: 28.6
IPR038336	NET domain superfamily	GENE3D	1.20.1270.220		coord: 91..136 e-value: 2.0E-5 score: 26.5
None	No IPR available	PANTHER	PTHR33876	UNNAMED PRODUCT	coord: 2..99
None	No IPR available	PANTHER	PTHR33876:SF4	EXPRESSED PROTEIN	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039710.1	Chy2G039710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane