Chy2G039420 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039420
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CRIB domain-containing protein
Location	chrH02: 16504355 .. 16506501 (-)
RNA-Seq Expression	Chy2G039420
Synteny	Chy2G039420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAATGGAGATGGAAATGGAAATAGGATCTCCAACAGATGTGAAGCATGTGACACACATAGGATGTGATGCCACAACAAGAGAAGATGCTGCCAATTCTTTCATTGCTTGGGAAACTCTTCTAGCTTCTTCTTCTTGGAGGCAATTTGATGATCAACTTTCAAACCCTAAGCATTTACCTAATATTCTTGGTCACTCCATTTGAAATAATACTAATACTAATAATAATAATAATCTCTCCATATACATATAGTATTTCATCACTACTTATGTGCAAACAAATGTATGGTGTTCTTGTTTTCATTTCCTTTTTCTTTTTTTTTTTTAATGCATGTTTGATGATCATGGCATTCATATGGAGATATATGTATATTTAATGTCTCTCCAACATGATTTTTTTTTTTAATTTTGCTAATTTATGTATAAATGGTATTTCAAGATTTGCATGACACAACTCCTATGTATATGTTTAATTTGTTTTTCCAATAAGAACAACATAAAACAGACATTATGATTCAAAACTCCTCACCAAACAATTTTAATAAAGATTTTCTCTTTTGATGATATAGTGATACATTCACATGAAAGTTGTGCACCCGGAATACATTTGAATGGAAAAGACACATAAAAGTAGGCTGTTCTATTAAAATAGGACTTATACAAGCCCTCTAACCCAATCACTAACTAGAGTCATGCAAATGTAGTGACAAATAAAGCTCTTAAAGAGGTTGAACCAAATTTCTCTTCGCAACTGCTCCTAAAACAAGAAAACAGAACTTAATTGCTTACTAAACTGAAAATCAGCTGTAATAAAATCTGTTCTAAGTCACCTCAATAACAGAAGAAACTTCTTCAATATTCTATGATGAACTTGTATAAGATTAGAGAGACAGTCTAAGAGTTTTTTACTTTACTTTTCTTGTAATCTTTACTATTGTAATCTTTGATGATCTTCAAAATGGATGTAGGTATTTTTATCAAACCACTGGTGTATTCTTCTCCCTTCTCTTTCTCTTCTTCTAAATCTTCTTAACTAAATTGATGAAAACTTAAATCTCTGCAGCTAATTGAAATGAGAAAAAGAGAGAGGAATCACAGAGAGAGTTCTTCAATAATTTTCATTTGCAAGTGTAAAAATGGATATATAATGAAGAAACTGTTTAGTATTTTCACCATTTTGCAGATTAATGGGTTGAGTGGGTGAATTAGTGGGGCATTCGTAAGGGCCATGCATTGGGTCTTTGGGCTAGTGGAATTATCCAAAGATTGTAGAGAGGTTTTTACAACAAAAACCTAATCATGACCAATCAAGAAGTTAATATATAACTCAAGTTACATGGTAAATAAGTAACAAATGAAACTCAAAAATTGATCAACATATAGTGAAAATTGATCAACATTTTGTCGTTTGAGAGCGGAAAGTAGAACAAATTTTGGAGGGTGCCATGGAACTTTGATTCTAACAATAGATCTCAACTTTATACTGATCTTAACACATTTCTAATAACAAACTACTAATAATGTGTTAAGATTATAATAACTATAGTTTATAGTCTATAGTTATTATAATAAGTATAAATGTAAATTAGGAGTATAAATGTAAATTAGGAGTAAATTTAGTTGTTACCTTATTTTCTTGTATTAAGAGTTTATTTATTCTCTAATGTACCAATATAGAAGACACATACATTTTATCAATAAAATATTCAAGCACATGGTATAAGAACCTAAAACCCTAACCTAAGTCAACCAACCGCCGTCGTCGTTCCTCTCTCTACAGTGGAGACCGTCGGCGAAGACACCTCGGCGTGATTCGCAGGTCACAGTTCTCAGAACCGGCCGACCAACCATATCTGCATCTGCTCTTCGTCCAAAGACTCCTTCCGTTCAGATCCACCGTGATTCAGTAGCGATTCCGTCCAGATCCGCCGCGATCCCGTTCAGATCTCCGATCTGACAGTCTGTTCCCTCTATTCAGATCAGACTCAGACACTTGCCGCTCGTGAAGCTTGCCGCAAAGCCTGTCCTTTTCGTTTGCATCGTGACAGTTCCCCTACCGTCCGCTGTCTCCTTCTCAAGTTTGCCCACCTACCGTTAGCTTCTTTTTCTGCGACTGCATCTGCTTTGCCTTCAATTTTGTGA

mRNA sequence

ATGGAAGAAATGGAGATGGAAATGGAAATAGGATCTCCAACAGATGTGAAGCATGTGACACACATAGGATGTGATGCCACAACAAGAGAAGATGCTGCCAATTCTTTCATTGCTTGGGAAACTCTTCTAGCTTCTTCTTCTTGGAGGCAATTTGATGATCAACTTTCAAACCCTAAGCATTTACCTAATATTCTTGATCAGACTCAGACACTTGCCGCTCGTGAAGCTTGCCGCAAAGCCTGTCCTTTTCGTTTGCATCGTGACAGTTCCCCTACCGTCCGCTGTCTCCTTCTCAAGTTTGCCCACCTACCGTTAGCTTCTTTTTCTGCGACTGCATCTGCTTTGCCTTCAATTTTGTGA

Coding sequence (CDS)

ATGGAAGAAATGGAGATGGAAATGGAAATAGGATCTCCAACAGATGTGAAGCATGTGACACACATAGGATGTGATGCCACAACAAGAGAAGATGCTGCCAATTCTTTCATTGCTTGGGAAACTCTTCTAGCTTCTTCTTCTTGGAGGCAATTTGATGATCAACTTTCAAACCCTAAGCATTTACCTAATATTCTTGATCAGACTCAGACACTTGCCGCTCGTGAAGCTTGCCGCAAAGCCTGTCCTTTTCGTTTGCATCGTGACAGTTCCCCTACCGTCCGCTGTCTCCTTCTCAAGTTTGCCCACCTACCGTTAGCTTCTTTTTCTGCGACTGCATCTGCTTTGCCTTCAATTTTGTGA

Protein sequence

MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILDQTQTLAAREACRKACPFRLHRDSSPTVRCLLLKFAHLPLASFSATASALPSIL*

Homology

[Close]

BLAST of Chy2G039420 vs. ExPASy TrEMBL
Match: A0A0A0LY31 (CRIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G658520 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.7e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 60
           MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH
Sbjct: 103 MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 162

Query: 61  LPNIL 66
           LPNIL
Sbjct: 163 LPNIL 167

[Close]

BLAST of Chy2G039420 vs. ExPASy TrEMBL
Match: A0A1S3B8Q2 (CRIB domain-containing protein RIC4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487233 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTR-EDAANSFIAWETLLASSSWRQFDDQLSNPK 60
           MEEMEMEMEIGSPTDVKHVTHIGCDAT R EDAANSFIAWETLLASSSWRQFDDQLSNPK
Sbjct: 104 MEEMEMEMEIGSPTDVKHVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPK 163

Query: 61  HLPNIL 66
           HLPNIL
Sbjct: 164 HLPNIL 169

[Close]

BLAST of Chy2G039420 vs. ExPASy TrEMBL
Match: A0A5D3D8D5 (CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00160 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MEEMEMEMEIGSPTDVKHVTHIGCDATTR-EDAANSFIAWETLLASSSWRQFDDQLSNPK 60
          MEEMEMEMEIGSPTDVKHVTHIGCDAT R EDAANSFIAWETLLASSSWRQFDDQLSNPK
Sbjct: 1  MEEMEMEMEIGSPTDVKHVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPK 60

Query: 61 HLPNIL 66
          HLPNIL
Sbjct: 61 HLPNIL 66

[Close]

BLAST of Chy2G039420 vs. ExPASy TrEMBL
Match: A0A1S3B9E6 (CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487233 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTR-EDAANSFIAWETLLASSSWRQFDDQLSNPK 60
           MEEMEMEMEIGSPTDVKHVTHIGCDAT R EDAANSFIAWETLLASSSWRQFDDQLSNPK
Sbjct: 103 MEEMEMEMEIGSPTDVKHVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPK 162

Query: 61  HLPNIL 66
           HLPNIL
Sbjct: 163 HLPNIL 168

[Close]

BLAST of Chy2G039420 vs. ExPASy TrEMBL
Match: A0A6J1F000 (CRIB domain-containing protein RIC4 OS=Cucurbita moschata OX=3662 GN=LOC111441091 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATT-REDAANSFIAWETLLASS--------SWR-- 60
           MEEME EME+G PTDVKH+THIGCDATT  +D  N FI WETLLAS         SW   
Sbjct: 94  MEEME-EMEVGCPTDVKHLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTEL 153

Query: 61  QFDDQLSNPKHLPN 64
           + D  LSNP  LP+
Sbjct: 154 ELDHHLSNPNVLPH 166

[Close]

BLAST of Chy2G039420 vs. NCBI nr
Match: XP_004139106.1 (CRIB domain-containing protein RIC4 isoform X4 [Cucumis sativus])

HSP 1 Score: 136 bits (343), Expect = 3.90e-38
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 60
           MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH
Sbjct: 103 MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 162

Query: 61  LPNIL 65
           LPNIL
Sbjct: 163 LPNIL 167

[Close]

BLAST of Chy2G039420 vs. NCBI nr
Match: XP_011660226.1 (CRIB domain-containing protein RIC4 isoform X3 [Cucumis sativus])

HSP 1 Score: 136 bits (343), Expect = 4.02e-38
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 60
           MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH
Sbjct: 104 MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 163

Query: 61  LPNIL 65
           LPNIL
Sbjct: 164 LPNIL 168

[Close]

BLAST of Chy2G039420 vs. NCBI nr
Match: XP_031737739.1 (CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus])

HSP 1 Score: 136 bits (343), Expect = 1.03e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 60
           MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH
Sbjct: 137 MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 196

Query: 61  LPNIL 65
           LPNIL
Sbjct: 197 LPNIL 201

[Close]

BLAST of Chy2G039420 vs. NCBI nr
Match: XP_031737734.1 (CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus] >KAE8653577.1 hypothetical protein Csa_007599 [Cucumis sativus])

HSP 1 Score: 136 bits (343), Expect = 1.06e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 60
           MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH
Sbjct: 138 MEEMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKH 197

Query: 61  LPNIL 65
           LPNIL
Sbjct: 198 LPNIL 202

[Close]

BLAST of Chy2G039420 vs. NCBI nr
Match: KAA0038271.1 (CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo var. makuwa] >TYK19818.1 CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 7.45e-37
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MEEMEMEMEIGSPTDVKHVTHIGCDATTR-EDAANSFIAWETLLASSSWRQFDDQLSNPK 60
          MEEMEMEMEIGSPTDVKHVTHIGCDAT R EDAANSFIAWETLLASSSWRQFDDQLSNPK
Sbjct: 1  MEEMEMEMEIGSPTDVKHVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPK 60

Query: 61 HLPNIL 65
          HLPNIL
Sbjct: 61 HLPNIL 66

[Close]

BLAST of Chy2G039420 vs. TAIR 10
Match: AT1G27380.2 (ROP-interactive CRIB motif-containing protein 2 )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 2  EEMEMEMEIGSPTDVKHVTHIGCDA--TTREDAANSF 37
          +E E EMEIG PTDVKH++HIG D   TT ++ ++SF
Sbjct: 63 KEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNTSSSF 99

[Close]

BLAST of Chy2G039420 vs. TAIR 10
Match: AT1G27380.1 (ROP-interactive CRIB motif-containing protein 2 )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 2  EEMEMEMEIGSPTDVKHVTHIGCDA--TTREDAANSF 37
          +E E EMEIG PTDVKH++HIG D   TT ++ ++SF
Sbjct: 63 KEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNTSSSF 99

[Close]

BLAST of Chy2G039420 vs. TAIR 10
Match: AT2G33460.1 (ROP-interactive CRIB motif-containing protein 1 )

HSP 1 Score: 42.0 bits (97), Expect = 4.0e-04
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 0


Query: 2  EEMEMEMEIGSPTDVKHVTHIGCDATT 29
          EE E EM+IG PTDVKHV HIG D  T
Sbjct: 21 EEKEQEMQIGFPTDVKHVAHIGSDGPT 47

[Close]

BLAST of Chy2G039420 vs. TAIR 10
Match: AT4G28556.1 (PAK-box/P21-Rho-binding family protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.0e-04
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 3  EMEMEMEIGSPTDVKHVTHIGCDATTREDAANSFI 38
          E E EM+IG+PTDVKHV HIG D  +    A S++
Sbjct: 29 EKEEEMQIGNPTDVKHVAHIGWDGPSDNATAPSWM 63

The following BLAST results are available for this feature:

BLAST of Chy2G039420 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G039420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY31	3.7e-29	100.00	CRIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G658520 PE=4 S...	[more]
A0A1S3B8Q2	3.4e-27	96.97	CRIB domain-containing protein RIC4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3D8D5	3.4e-27	96.97	CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B9E6	3.4e-27	96.97	CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1F000	2.2e-10	59.46	CRIB domain-containing protein RIC4 OS=Cucurbita moschata OX=3662 GN=LOC11144109...	[more]

BLAST of Chy2G039420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139106.1	3.90e-38	100.00	CRIB domain-containing protein RIC4 isoform X4 [Cucumis sativus]	[more]
XP_011660226.1	4.02e-38	100.00	CRIB domain-containing protein RIC4 isoform X3 [Cucumis sativus]	[more]
XP_031737739.1	1.03e-37	100.00	CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus]	[more]
XP_031737734.1	1.06e-37	100.00	CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus] >KAE8653577.1 h...	[more]
KAA0038271.1	7.45e-37	96.97	CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo var. makuwa] >TYK19...	[more]

BLAST of Chy2G039420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27380.2	2.4e-04	56.76	ROP-interactive CRIB motif-containing protein 2	[more]
AT1G27380.1	2.4e-04	56.76	ROP-interactive CRIB motif-containing protein 2	[more]
AT2G33460.1	4.0e-04	70.37	ROP-interactive CRIB motif-containing protein 1	[more]
AT4G28556.1	9.0e-04	54.29	PAK-box/P21-Rho-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036936	CRIB domain superfamily	GENE3D	3.90.810.10	CRIB domain	coord: 6..79 e-value: 3.4E-7 score: 32.2
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 9..48 e-value: 1.8E-7 score: 31.4
IPR000095	CRIB domain	PROSITE	PS50108	CRIB	coord: 10..23 score: 9.013923
IPR044509	CRIB domain-containing protein RIC2/4	PANTHER	PTHR46931	CRIB DOMAIN-CONTAINING PROTEIN RIC2	coord: 1..68
None	No IPR available	PANTHER	PTHR46931:SF6	CRIB DOMAIN-CONTAINING PROTEIN RIC4	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039420.1	Chy2G039420.1	mRNA