Chy2G039160 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G039160
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ycf20-like protein
Location	chrH02: 15772979 .. 15774478 (+)
RNA-Seq Expression	Chy2G039160
Synteny	Chy2G039160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGGATCATGTCTTACTAATATGCCCTGCCTAATCCACGACTGGGGCTATGAGGCTATCTTTAATGGACATAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGGTACACGTGGAATTTTTGAACTTGTATCACGCCTTGTTAAGAGGCCTGCGCTATTTTTCTTGTGTGTATTTCCATTTTAATTGTTGAATCCTTGGGTAATTTGATGACCGCTTATATTATATTGAGAACTAGAGAGGAATATTAGTTCTTAGAGAGATTGGAAGATCTTGGGTGGAGGTCTGAGCGGTTGCTAGGTTTAAAGCTTCTGTACGGGTGTATCCCCTCTTTGTTTGTAGTTACCAGCTTGGTTTCATTCTTTTGGATTGGAGTCGGCTCTCCTAATTATTGTTAGGACCAGTGTTTCAAAAGCCCGCTTGGAGGCGCACGCCAAGGCTCAAGGCTCAAGTTTGAAAAAGCAAGGCTCATGAAATAAGGCACGCCTTAGGTGCACGTCTTTTGTGAAGCTCCATGGCTCAAAGCCTGGCCCTTGGGGCTTTTTCATTATTTATAATAAAAGTAATAATTAGGGTTTTTTCCTTCTTTATTAACTAAAATTATTAAAGTTAGTAAAGCCCAAATGCAAAATTTCTTGTGTTTAGAGAGTTTCCTTTTCCTATACGTCCACTTTAACCATGCTTTCTCATGAATGAAGTATGTTTATATATAATGTGCCTCATTGAAAAACTATTGCGTTGAGCCCTAAAGACTATTGCGCTAAGCCCTAAAGACTATTGCGTTTTCTTGTGGGTTGAGGTTTAAGAAACACTGGTTGGGACTTTGACTCCTTATGTCATGTGAAATTGTTCTTTTGTATCTTCTTGTGCATTCTTTCATTTTTCTCAACAGAAGCTCGGTTTTGTATGAAAGGAAGTTTATTTATTGATGCTGTTATGAACCTGTATGTGATGTTACTTGTTACAGTTTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCAATGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTACACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATTGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTAGGCCTCTTTGTTGATGCGTTCAAATTAGGAAGTTGA

mRNA sequence

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGGATCATGTCTTACTAATATGCCCTGCCTAATCCACGACTGGGGCTATGAGGCTATCTTTAATGGACATAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTTTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCAATGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTACACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATTGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTAGGCCTCTTTGTTGATGCGTTCAAATTAGGAAGTTGA

Coding sequence (CDS)

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGGATCATGTCTTACTAATATGCCCTGCCTAATCCACGACTGGGGCTATGAGGCTATCTTTAATGGACATAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTTTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCAATGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTACACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATTGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTAGGCCTCTTTGTTGATGCGTTCAAATTAGGAAGTTGA

Protein sequence

MEVGIFQMGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQTSRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS*

Homology

[Close]

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 3.6e-53
Identity = 112/166 (67.47%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 50  SSSFLLKSAPFPRKSFQTSRHVNKLAFALDTGG--VSSSGGGDNINDGDESNLGRTRLGR 109
           +SS  L S P+P KSFQ  R   K+AFALDTG      SG G  +N GD + LG TRLGR
Sbjct: 33  ASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMN-GDRTGLGSTRLGR 92

Query: 110 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 169
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 93  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 152

Query: 170 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 153 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-19
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 100 LGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 159
           +  TRL    ++  + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 160 GVVVAAIEWIGILMYRKPPPLLTRRLK---SF--IVMVNYWKAGVCLGLFVDAFKLGS 213
           G++VA IE +G  MY K    ++++     SF  ++ +NY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSK--KYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAA E    ++Y        ++L   I + N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-12
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAAIE +  ++Y        R     I ++N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RTRL  +V    +QL +   +  +     +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           ++   E +    YR+   +   + +    ++N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAE----VLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Chy2G039160 vs. ExPASy TrEMBL
Match: A0A0A0LXR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.0e-111
Identity = 207/212 (97.64%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQ SCLTNMPCLIH WGYEAIFNG SSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSFQTSRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKS QTSRHVNKLAFALDTGGVSSSGGGDNI+DGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Chy2G039160 vs. ExPASy TrEMBL
Match: A0A6J1EGC6 (ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93
Identity = 174/205 (84.88%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           M A+I+ SRLLT ANY  +G CLT MPCLIH+ GY AI NGH+S+  LKSAPFPRKSF+T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN++DG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Chy2G039160 vs. ExPASy TrEMBL
Match: A0A6J1ICF7 (ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 173/205 (84.39%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           M A+I+ SRLLT ANY  +G CLT MPCLIH+  Y AI NGH+S+  LKSAPFPRKSF+T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN++DG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Chy2G039160 vs. ExPASy TrEMBL
Match: A0A6J1D763 (ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.9e-86
Identity = 168/207 (81.16%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           MGA+IL SRLL   +YS +GSCLTN+ CL++ WGY A+FN  +S+  LKSAPFPR+SFQT
Sbjct: 6   MGAMILQSRLLKIESYSSRGSCLTNISCLVYYWGYAAVFNAQNSTRCLKSAPFPRRSFQT 65

Query: 68  SRHV--NKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 127
           SRH+   KLAFALDT G+  +GG DN  DGDESNLGRTRLGRLVSS ARQLLEKLNSARK
Sbjct: 66  SRHLRKRKLAFALDTSGLPRNGGEDN-PDGDESNLGRTRLGRLVSSAARQLLEKLNSARK 125

Query: 128 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 187
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPPPLLTRRL
Sbjct: 126 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGVLMYRKPPPLLTRRL 185

Query: 188 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           KSFIVM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 186 KSFIVMINYWKAGVCLGLFVDAFKLGS 211

[Close]

BLAST of Chy2G039160 vs. ExPASy TrEMBL
Match: A0A5A7T5T0 (Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00190 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.8e-75
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 64  SFQTSRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123
           SFQTSRHVNK+AFALDTGGVSSSGGGDN++DGDESNLGRTRLGRLVSSGARQLLEKLNSA
Sbjct: 21  SFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 80

Query: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183
           RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR
Sbjct: 81  RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 140

Query: 184 RLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           RLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 141 RLKSFIVMVNYWKAGVCLGLFVDAFKLGS 169

[Close]

BLAST of Chy2G039160 vs. NCBI nr
Match: XP_011660206.1 (ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_007230 [Cucumis sativus])

HSP 1 Score: 408 bits (1049), Expect = 2.12e-143
Identity = 207/212 (97.64%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQ SCLTNMPCLIH WGYEAIFNG SSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSFQTSRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKS QTSRHVNKLAFALDTGGVSSSGGGDNI+DGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Chy2G039160 vs. NCBI nr
Match: XP_038878602.1 (ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benincasa hispida] >XP_038878605.1 ycf20-like protein [Benincasa hispida] >XP_038878606.1 ycf20-like protein [Benincasa hispida])

HSP 1 Score: 370 bits (950), Expect = 2.61e-128
Identity = 187/212 (88.21%), Postives = 197/212 (92.92%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPF 60
           M++ I QM AVIL SRLLT ANYS +GSCLTNMPCL+H WG EA FNGH+SS  LKSA F
Sbjct: 1   MQMSICQMEAVILQSRLLTIANYSSKGSCLTNMPCLLHYWGREAFFNGHNSSPFLKSALF 60

Query: 61  PRKSFQTSRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKSFQTSRH+ KLAFALDTGGVSS+GGGD ++DGD+SNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSFQTSRHLKKLAFALDTGGVSSNGGGDKVDDGDDSNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212
           LTRRLKSFI MVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIAMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Chy2G039160 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata] >KAG7022187.1 Ycf20-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350 bits (898), Expect = 1.71e-120
Identity = 174/205 (84.88%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           M A+I+ SRLLT ANY  +G CLT MPCLIH+ GY AI NGH+S+  LKSAPFPRKSF+T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN++DG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Chy2G039160 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348 bits (894), Expect = 6.97e-120
Identity = 173/205 (84.39%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           M A+I+ SRLLT ANY  +G CLT MPCLIH+ GY AI NGH+S+  LKS PFPRKSF+T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN++DG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Chy2G039160 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 347 bits (891), Expect = 2.00e-119
Identity = 173/205 (84.39%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQGSCLTNMPCLIHDWGYEAIFNGHSSSFLLKSAPFPRKSFQT 67
           M A+I+ SRLLT ANY  +G CLT MPCLIH+  Y AI NGH+S+  LKSAPFPRKSF+T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN++DG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Chy2G039160 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-54
Identity = 112/166 (67.47%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 50  SSSFLLKSAPFPRKSFQTSRHVNKLAFALDTGG--VSSSGGGDNINDGDESNLGRTRLGR 109
           +SS  L S P+P KSFQ  R   K+AFALDTG      SG G  +N GD + LG TRLGR
Sbjct: 33  ASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMN-GDRTGLGSTRLGR 92

Query: 110 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 169
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 93  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 152

Query: 170 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 153 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Chy2G039160 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-25
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  +    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Chy2G039160 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-25
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  +    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Chy2G039160 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-25
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNINDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  +    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Chy2G039160 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 42.7 bits (99), Expect = 4.2e-04
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 134 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSF-IVMV 193
           LL GFY A  ++   G  G  DV+ A + V   E++    Y       +R   +F I ++
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYY-------SRTTVTFPIALL 145

Query: 194 NYWKAGVCLGLFVDAFKLGS 213
           N +K G   GLF+DAFKL S
Sbjct: 146 NNFKMGFTYGLFIDAFKLAS 158

The following BLAST results are available for this feature:

BLAST of Chy2G039160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	3.6e-53	67.47	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	7.7e-19	48.31	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	2.4e-12	38.74	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	3.1e-12	38.74	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	6.1e-08	30.63	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of Chy2G039160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2	4.0e-111	97.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1	[more]
A0A6J1EGC6	1.7e-93	84.88	ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1	[more]
A0A6J1ICF7	1.1e-92	84.39	ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1	[more]
A0A6J1D763	9.9e-86	81.16	ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1	[more]
A0A5A7T5T0	7.8e-75	97.99	Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664...	[more]

BLAST of Chy2G039160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660206.1	2.12e-143	97.64	ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis...	[more]
XP_038878602.1	2.61e-128	88.21	ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benin...	[more]
XP_022924878.1	1.71e-120	84.88	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_023520636.1	6.97e-120	84.39	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022973215.1	2.00e-119	84.39	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]

BLAST of Chy2G039160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65420.1	2.6e-54	67.47	Protein of unknown function (DUF565)	[more]
AT3G56830.1	5.6e-25	42.07	Protein of unknown function (DUF565)	[more]
AT3G56830.2	5.6e-25	42.07	Protein of unknown function (DUF565)	[more]
AT3G56830.3	5.6e-25	42.07	Protein of unknown function (DUF565)	[more]
AT5G43050.1	4.2e-04	36.25	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 150..212 e-value: 1.3E-21 score: 76.8
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 25..212
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 25..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G039160.1	Chy2G039160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane