Chy2G039060 (gene) Cucumber (hystrix) v1

Overview
NameChy2G039060
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH02: 15452033 .. 15452683 (-)
RNA-Seq ExpressionChy2G039060
SyntenyChy2G039060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGGCCATCGTGTAGTGAGTTTGGATGGAACGAAGAATATCAATGCATTATCGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGTATTAATTTAACAATACAATTTTATGTACTTTAATAATCCCAATCATTAACTAATCTATCTGAACTATGTTTGTATAGAGTCATTCTGCAGCCAAAGGCCTTCTACATAAATCATTCCCATATTATGATGATCTGTCCTATGTCTTCAACAAAGATTGGGCAACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTCTAATGTGCAAACAATTTTAATGACAGTGTTCCCCTTGGTGATTCACATGATCAAGACATCCCAACGATGTATAGCCAAGGAGTGGATATGTCACTAGATGATATGTTAGGAATACGTGCAGATTGATCAAGTAAAGGAAGAAATTGTTCAAGTGGAAGTAAATGGAAACGAGGTGGCTAACATTATGAAACGGTAGAGGTGATCAAGAATACAATGAAATTTAGAAATGATCAATTAAAGGCAATTGTATTTTGGCCAAAAGAAAAGCGTGCAACAAAGGTCGAATTGTGTGCTGAAGTAGTGAAAAAACTGCAAGATATCCCTGAACTATAGAGCCGAGTGAGGGCAAAGTTTATGCAA

mRNA sequence

ATGAGGGGGCCATCGTGTAGTGAGTTTGGATGGAACGAAGAATATCAATGCATTATCGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGTATTAAAAGATTGGGCAACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTCTAATGTGCAAACAATTTTAATGACAGTGTTCCCCTTGATTGATCAAGTAAAGGAAGAAATTGTTCAAGTGGAAGTAAATGGAAACGAGGCAATTGTATTTTGGCCAAAAGAAAAGCGTGCAACAAAGGTCGAATTGTGTGCTGAAGTAGTGAAAAAACTGCAAGATATCCCTGAACTATAGAGCCGAGTGAGGGCAAAGTTTATGCAA

Coding sequence (CDS)

ATGAGGGGGCCATCGTGTAGTGAGTTTGGATGGAACGAAGAATATCAATGCATTATCGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGTATTAAAAGATTGGGCAACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTCTAATGTGCAAACAATTTTAATGACAGTGTTCCCCTTGATTGATCAAGTAAAGGAAGAAATTGTTCAAGTGGAAGTAAATGGAAACGAGGCAATTGTATTTTGGCCAAAAGAAAAGCGTGCAACAAAGGTCGAATTGTGTGCTGAAGTAGTGAAAAAACTGCAAGATATCCCTGAACTATAGAGCCGAGTGAGGGCAAAGTTTATGCAA

Protein sequence

MRGPSCSEFGWNEEYQCIIAERELFDSWVKVLKDWATGARSEIFVDVGSNVQTILMTVFPLIDQVKEEIVQVEVNGNEAIVFWPKEKRATKVELCAEVVKKLQDIPEL*SRVRAKFMQ
Homology
BLAST of Chy2G039060 vs. ExPASy TrEMBL
Match: A0A0A0M343 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651700 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-35
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK--VLKDWATG----ARSEIFVDVGSNVQTI 60
           MRGPSCS+FGWNEEYQCI+ E+ELFDSWVK  ++     G    A+  + + V    QTI
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWV-KMCQTI 60

Query: 61  LMTVFPLIDQVKEEIVQVEVNGNEAIVFWPKEKRATKVELCAEVVKKLQDIPEL*SRVRA 118
           LMTVFPL+DQVKEEIV VEV GN+AIV WPKE+RATKVELC EVVK+LQDIPEL +RVR 
Sbjct: 61  LMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRV 120

BLAST of Chy2G039060 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.2e-25
Identity = 79/166 (47.59%), Postives = 91/166 (54.82%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK----------------------VLKDWATG 60
           MRGPSCS FGWNEE+QCIIAER+LFDSWVK                        KD ATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEI-----------------VQVEV------N 119
           ARSE FVDVGSNV  +     PL D   E+I                 ++ EV       
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAEVIRSVMEF 485

BLAST of Chy2G039060 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 79/191 (41.36%), Postives = 91/191 (47.64%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK----------------------VLKDWATG 60
           MRGPSCS FGWNEE+QCIIAER+LFDSW+K                        KD ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEI----------------------------- 119
           ARSE F +VGSNV  +     PL D   E+I                             
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

BLAST of Chy2G039060 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 79/191 (41.36%), Postives = 91/191 (47.64%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK----------------------VLKDWATG 60
           MRGPSCS FGWNEE+QCIIAER+LFDSW+K                        KD ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEI----------------------------- 119
           ARSE F +VGSNV  +     PL D   E+I                             
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

BLAST of Chy2G039060 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.2e-17
Identity = 57/119 (47.90%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK----------------------VLKDWATG 60
           +RGPSCS FGWNE++QCIIAER+LFD+WVK                        KD AT 
Sbjct: 255 IRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATE 314

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEIVQVEVNGNEAIVFWPKEKRATKVELCAE 98
           AR E F DVGSNV  +     PL D   ++I  +   G  AI  WPKEKRAT+VEL  E
Sbjct: 315 ARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQG--AIADWPKEKRATEVELRVE 371

BLAST of Chy2G039060 vs. NCBI nr
Match: KGN66636.1 (hypothetical protein Csa_007482 [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 4.11e-46
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVK--VLKDWATG----ARSEIFVDVGSNVQTI 60
           MRGPSCS+FGWNEEYQCI+ E+ELFDSWVK  ++     G    A+  + + V    QTI
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWV-KMCQTI 60

Query: 61  LMTVFPLIDQVKEEIVQVEVNGNEAIVFWPKEKRATKVELCAEVVKKLQDIPEL*SRVRA 117
           LMTVFPL+DQVKEEIV VEV GN+AIV WPKE+RATKVELC EVVK+LQDIPEL +RVR 
Sbjct: 61  LMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRV 120

BLAST of Chy2G039060 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 7.28e-29
Identity = 79/166 (47.59%), Postives = 91/166 (54.82%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVKVL----------------------KDWATG 60
           MRGPSCS FGWNEE+QCIIAER+LFDSWVK                        KD ATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEI-----------------VQVEVN------ 118
           ARSE FVDVGSNV  +     PL D   E+I                 ++ EV       
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAEVIRSVMEF 485

BLAST of Chy2G039060 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.66e-25
Identity = 79/191 (41.36%), Postives = 91/191 (47.64%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVKVL----------------------KDWATG 60
           MRGPSCS FGWNEE+QCIIAER+LFDSW+K                        KD ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEIVQ--------------------------- 118
           ARSE F +VGSNV  +     PL D   E+I                             
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

BLAST of Chy2G039060 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.92e-19
Identity = 57/119 (47.90%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVKVL----------------------KDWATG 60
           +RGPSCS FGWNE++QCIIAER+LFD+WVK                        KD AT 
Sbjct: 255 IRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATE 314

Query: 61  ARSEIFVDVGSNVQTILMTVFPLIDQVKEEIVQVEVNGNEAIVFWPKEKRATKVELCAE 97
           AR E F DVGSNV  +     PL D   ++I  +   G  AI  WPKEKRAT+VEL  E
Sbjct: 315 ARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQG--AIADWPKEKRATEVELRVE 371

BLAST of Chy2G039060 vs. NCBI nr
Match: TYK07962.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 8.00e-19
Identity = 60/146 (41.10%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MRGPSCSEFGWNEEYQCIIAERELFDSWVKVL--------------------KDWATGAR 60
           MR  S   FGWNEE+QCI+A+ E FDSW                        KD ATGA 
Sbjct: 1   MRESSSICFGWNEEFQCIVAKGEFFDSWSHRAAKGFLHKSFSYYDDLFYVFDKDQATGAC 60

Query: 61  SEIFVDVGSNVQTILMTVFPLIDQVKEEIVQVEVNGNEAIVF--------WPKEKRATKV 118
            E F DVGSN+  +     PL D   ++I  +   G    +         WPKEK AT+V
Sbjct: 61  LETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTDWPKEKHATEV 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M3432.0e-3567.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651700 PE=4 SV=1[more]
A0A5D3DG229.2e-2547.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H74.7e-2141.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L34.7e-2141.36uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3D8J69.2e-1747.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KGN66636.14.11e-4667.48hypothetical protein Csa_007482 [Cucumis sativus][more]
KAA0062747.17.28e-2947.59retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
XP_008441954.11.66e-2541.36PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
TYK19779.12.92e-1947.90retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07962.18.00e-1941.10retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G039060.1Chy2G039060.1mRNA