Chy2G038890 (gene) Cucumber (hystrix) v1

Overview
NameChy2G038890
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionBeta-galactosidase
LocationchrH02: 15119239 .. 15121610 (+)
RNA-Seq ExpressionChy2G038890
SyntenyChy2G038890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGGCGCATTATCTTCTCAGGCTCAATTCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTCATTCAAAAAGCTAAAGATGGTGGACTTGATGCAATTGAGACATACATTTTCTGGGATCGTCACGAGCCACAACGACGAAAATATGATTTCTCTGGACGTTTAGATTTTATTAAATTCTTCCAACTTATCCAAGACGCTGGACTTTATGTTGTCATGAGGATTGGTCCTTACGTGTGTGCCGAGTGGAACTACGGAGGCTTTCCAGTGTGGTTGCACAGTATGCCAGGAATCCAACTACGAACTAACAATCAAGTTTACAAGAATGAAATGCAAACTTTCACGACAAAGATAGTAAATATGTGTAAACAAGCCAATCTCTTTGCTTCACAAGGAGGGCCAATAATATTAGCTCAAATCGAGAATGAGTATGGAAATGTGATGACACCGGCTTATGGAGATGCAGGAAAAGCATATATCAATTGGTGTGCTCAAATGGCCGAATCTCTCAATATCGGCGTTCCATGGATCATGTGCCAACAAAGTGATGCCCCACAACCTATGATTAATACATGCAATGGATTCTATTGTGATAACTTTACTCCAAACAATCCTAAGAGCCCAAAAATGTTCACTGAAAATTGGGTGGGATGGTTCAAGAAATGGGGCGACAAAGACCCTTATAGAACTGCAGAAGATGTAGCATTTTCTGTGGCAAGATTTTTTCAATCTGGTGGTGTGTTCAACAATTATTACATGTATCATGGAGGCACCAACTTTGGAAGAACATCGGGAGGTCCATTCATCACTACATCTTACGACTACAACGCCCCACTTGATGAATATGGGAACTTGAATCAACCTAAATGGGGGCATCTCAAACAACTCCATGCATCAATCAAGTTAGGGGAGAGGATTCTCACTAACAGCACACGCTCATACCAAAACTTTGGTAGCTCTGTAACTTTAACGAAATTTTTTAACCCAACAACTGGGGAGAGGTTTTGCTTTTTAAGCAACACAGATGGAAAAAATGATGCCACCATAGATCTACAAGAAGATGGAAAATATTTCGTACCAGCTTGGTCTGTGAGCATTCTTGATGGTTGCAACAAGGAGGTTTACAACACTGCAAAAGTAAATTCTCAGACATCTATGTTTGTGAAGGAGCAAAATGAGAAGGAAAATGCACAACTGTCATGGGCTTGGGCTCCAGAACCTATGAAAGACACACTGCAAGGAAATGGTAAATTTGCGGCAAACCTTCTTTTGGAACAAAAAAGGGTCACAGTTGATTTTAGCGACTACTTCTGGTACATGACGAAGGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCCAAGTAAATACAAAGGGTCATGTGCTTCATGCTTTCGTCAATAAAAGATACATTGGGTCGAAATGGGGGAGTAATGGCCAGAGTTTTGTGTTAGAGAAACCCATTCTACTAAAATCGGGAATCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCGTTTTATGACATGGTGCCAACAGGAATCGATGGAGGTCCGATCTATCTAATTGGAGATGGAAACGTGACAGCTGATTTGTCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACCCGATGTTCTCACAAAGAACAAATTGGATTCCACTAAATCAAAAATCTATTGGAAGGCGAATGACATGGTACAAGACTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCATGGGTAAATGGGCAAAGCATAGGCCGATTTTGGCCATCTTTCATTGCTGGCAATGATAGTTGCAGCGCAACATGTGACTACAGAGGTGCATACAACCCTAGCAAATGTGTGGAAAATTGTGGAAATCCTTCTCAAAGATGGTATCATGTTCCAAGATCATTTCTTACAAGCGACACAAACACATTGATTTTATTTGAAGAAATTGGTGGAAATCCACAACAAGTGTCAGTTCAAACAATCACAATAGGAACTATATGTGGAAATGCTAATGAAGGAAGCACCTTAGAGTTGTCTTGTCAGGGAGGACATGTCATCTCTGAAATCCAATTTGCTAGCTACGGAAATCCAGGGGGAAAATGTGGTTCGTTTAAGAAAGGTTCATGGGATGTGACAAACATTGCTCTTATTGTTGAAAAAGCTTGCATTGGCATGGAAAGTTGTTCAATTGATGTATCTGCAAAGTCATTTGGATTAGGCGATGCTACAAATTTATCTGCAAGATTGGCAGTTCAAGCACTATGTGCACAAAATTGA

mRNA sequence

ATGGAGAACGGCGCATTATCTTCTCAGGCTCAATTCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTCATTCAAAAAGCTAAAGATGGTGGACTTGATGCAATTGAGACGATTGGTCCTTACGTGTGTGCCGAGTGGAACTACGGAGGCTTTCCAGTGTGGTTGCACAGTATGCCAGGAATCCAACTACGAACTAACAATCAAGTTTACAAGAATGAAATGCAAACTTTCACGACAAAGATAGTAAATATGTGTAAACAAGCCAATCTCTTTGCTTCACAAGGAGGGCCAATAATATTAGCTCAAATCGAGAATGAGTATGGAAATGTGATGACACCGGCTTATGGAGATGCAGGAAAAGCATATATCAATTGGTGTGCTCAAATGGCCGAATCTCTCAATATCGGCGTTCCATGGATCATGTGCCAACAAAGTGATGCCCCACAACCTATGATTAATACATGCAATGGATTCTATTGTGATAACTTTACTCCAAACAATCCTAAGAGCCCAAAAATGTTCACTGAAAATTGGGTGGGATGGTTCAAGAAATGGGGCGACAAAGACCCTTATAGAACTGCAGAAGATGTAGCATTTTCTGTGGCAAGATTTTTTCAATCTGGTGGTGTGTTCAACAATTATTACATGTATCATGGAGGCACCAACTTTGGAAGAACATCGGGAGGTCCATTCATCACTACATCTTACGACTACAACGCCCCACTTGATGAATATGGGAACTTGAATCAACCTAAATGGGGGCATCTCAAACAACTCCATGCATCAATCAAGTTAGGGGAGAGGATTCTCACTAACAGCACACGCTCATACCAAAACTTTGGTAGCTCTGTAACTTTAACGAAATTTTTTAACCCAACAACTGGGGAGAGGTTTTGCTTTTTAAGCAACACAGATGGAAAAAATGATGCCACCATAGATCTACAAGAAGATGGAAAATATTTCGTACCAGCTTGGTCTGTGAGCATTCTTGATGGTTGCAACAAGGAGGTTTACAACACTGCAAAAGTAAATTCTCAGACATCTATGTTTGTGAAGGAGCAAAATGAGAAGGAAAATGCACAACTGTCATGGGCTTGGGCTCCAGAACCTATGAAAGACACACTGCAAGGAAATGGTAAATTTGCGGCAAACCTTCTTTTGGAACAAAAAAGGGTCACAGTTGATTTTAGCGACTACTTCTGGTACATGACGAAGGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCCAAGTAAATACAAAGGGTCATGTGCTTCATGCTTTCGTCAATAAAAGATACATTGGGTCGAAATGGGGGAGTAATGGCCAGAGTTTTGTGTTAGAGAAACCCATTCTACTAAAATCGGGAATCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCGTTTTATGACATGGTGCCAACAGGAATCGATGGAGGTCCGATCTATCTAATTGGAGATGGAAACGTGACAGCTGATTTGTCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACCCGATGTTCTCACAAAGAACAAATTGGATTCCACTAAATCAAAAATCTATTGGAAGGCGAATGACATGGTACAAGACTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCATGGGTAAATGGGCAAAGCATAGGCCGATTTTGGCCATCTTTCATTGCTGGCAATGATAGTTGCAGCGCAACATGTGACTACAGAGGTGCATACAACCCTAGCAAATGTGTGGAAAATTGTGGAAATCCTTCTCAAAGATGGTATCATGTTCCAAGATCATTTCTTACAAGCGACACAAACACATTGATTTTATTTGAAGAAATTGGTGGAAATCCACAACAAGTGTCAGTTCAAACAATCACAATAGGAACTATATGTGGAAATGCTAATGAAGGAAGCACCTTAGAGTTGTCTTGTCAGGGAGGACATGTCATCTCTGAAATCCAATTTGCTAGCTACGGAAATCCAGGGGGAAAATGTGGTTCGTTTAAGAAAGGTTCATGGGATGTGACAAACATTGCTCTTATTGTTGAAAAAGCTTGCATTGGCATGGAAAGTTGTTCAATTGATGTATCTGCAAAGTCATTTGGATTAGGCGATGCTACAAATTTATCTGCAAGATTGGCAGTTCAAGCACTATGTGCACAAAATTGA

Coding sequence (CDS)

ATGGAGAACGGCGCATTATCTTCTCAGGCTCAATTCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTCATTCAAAAAGCTAAAGATGGTGGACTTGATGCAATTGAGACGATTGGTCCTTACGTGTGTGCCGAGTGGAACTACGGAGGCTTTCCAGTGTGGTTGCACAGTATGCCAGGAATCCAACTACGAACTAACAATCAAGTTTACAAGAATGAAATGCAAACTTTCACGACAAAGATAGTAAATATGTGTAAACAAGCCAATCTCTTTGCTTCACAAGGAGGGCCAATAATATTAGCTCAAATCGAGAATGAGTATGGAAATGTGATGACACCGGCTTATGGAGATGCAGGAAAAGCATATATCAATTGGTGTGCTCAAATGGCCGAATCTCTCAATATCGGCGTTCCATGGATCATGTGCCAACAAAGTGATGCCCCACAACCTATGATTAATACATGCAATGGATTCTATTGTGATAACTTTACTCCAAACAATCCTAAGAGCCCAAAAATGTTCACTGAAAATTGGGTGGGATGGTTCAAGAAATGGGGCGACAAAGACCCTTATAGAACTGCAGAAGATGTAGCATTTTCTGTGGCAAGATTTTTTCAATCTGGTGGTGTGTTCAACAATTATTACATGTATCATGGAGGCACCAACTTTGGAAGAACATCGGGAGGTCCATTCATCACTACATCTTACGACTACAACGCCCCACTTGATGAATATGGGAACTTGAATCAACCTAAATGGGGGCATCTCAAACAACTCCATGCATCAATCAAGTTAGGGGAGAGGATTCTCACTAACAGCACACGCTCATACCAAAACTTTGGTAGCTCTGTAACTTTAACGAAATTTTTTAACCCAACAACTGGGGAGAGGTTTTGCTTTTTAAGCAACACAGATGGAAAAAATGATGCCACCATAGATCTACAAGAAGATGGAAAATATTTCGTACCAGCTTGGTCTGTGAGCATTCTTGATGGTTGCAACAAGGAGGTTTACAACACTGCAAAAGTAAATTCTCAGACATCTATGTTTGTGAAGGAGCAAAATGAGAAGGAAAATGCACAACTGTCATGGGCTTGGGCTCCAGAACCTATGAAAGACACACTGCAAGGAAATGGTAAATTTGCGGCAAACCTTCTTTTGGAACAAAAAAGGGTCACAGTTGATTTTAGCGACTACTTCTGGTACATGACGAAGGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCCAAGTAAATACAAAGGGTCATGTGCTTCATGCTTTCGTCAATAAAAGATACATTGGGTCGAAATGGGGGAGTAATGGCCAGAGTTTTGTGTTAGAGAAACCCATTCTACTAAAATCGGGAATCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCGTTTTATGACATGGTGCCAACAGGAATCGATGGAGGTCCGATCTATCTAATTGGAGATGGAAACGTGACAGCTGATTTGTCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACCCGATGTTCTCACAAAGAACAAATTGGATTCCACTAAATCAAAAATCTATTGGAAGGCGAATGACATGGTACAAGACTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCATGGGTAAATGGGCAAAGCATAGGCCGATTTTGGCCATCTTTCATTGCTGGCAATGATAGTTGCAGCGCAACATGTGACTACAGAGGTGCATACAACCCTAGCAAATGTGTGGAAAATTGTGGAAATCCTTCTCAAAGATGGTATCATGTTCCAAGATCATTTCTTACAAGCGACACAAACACATTGATTTTATTTGAAGAAATTGGTGGAAATCCACAACAAGTGTCAGTTCAAACAATCACAATAGGAACTATATGTGGAAATGCTAATGAAGGAAGCACCTTAGAGTTGTCTTGTCAGGGAGGACATGTCATCTCTGAAATCCAATTTGCTAGCTACGGAAATCCAGGGGGAAAATGTGGTTCGTTTAAGAAAGGTTCATGGGATGTGACAAACATTGCTCTTATTGTTGAAAAAGCTTGCATTGGCATGGAAAGTTGTTCAATTGATGTATCTGCAAAGTCATTTGGATTAGGCGATGCTACAAATTTATCTGCAAGATTGGCAGTTCAAGCACTATGTGCACAAAATTGA

Protein sequence

MENGALSSQAQFIIHAALKQCGLISFKKLKMVDLMQLRRLVLTCVPSGTTEAFQCGCTVCQESNYELTIKFTRMKCKLSRQR**ICVNKPISLLHKEGQ*Y*LKSRMSMEM**HRLMEMQEKHISIGVLKWPNLSISAFHGSCANKVMPHNL*LIHAMDSIVITLLQTILRAQKCSLKIGWDGSRNGATKTLIELQKM*HFLWQDFFNLVVCSTIITCIMEAPTLEEHREVHSSLHLTTTTPHLMNMGT*INLNGGISNNSMHQSS*GRGFSLTAHAHTKTLVAL*L*RNFLTQQLGRGFAF*ATQMEKMMPP*IYKKMENISYQLGL*AFLMVATRRFTTLQK*ILRHLCL*RSKMRRKMHNCHGLGLQNL*KTHCKEMVNLRQTFFWNKKGSQLILATTSGT*RRLTLTEHLHFKM*LSK*IQRVMCFMLSSIKDTLGRNGGVMARVLC*RNPFY*NRESTQ*LF*VPQLG*RIMTRFMTWCQQESMEVRSI*LEMET*QLICHQIYGLIRLD*MEK*SKFTTRCSHKEQIGFH*IKNLLEGE*HGTRLALRHLLELTQ*SWTCKEWEKAKHG*MGKA*ADFGHLSLLAMIVAAQHVTTEVHTTLANVWKIVEILLKDGIMFQDHFLQATQTH*FYLKKLVEIHNKCQFKQSQ*ELYVEMLMKEAP*SCLVREDMSSLKSNLLATEIQGENVVRLRKVHGM*QTLLLLLKKLALAWKVVQLMYLQSHLD*AMLQIYLQDWQFKHYVHKIX
Homology
BLAST of Chy2G038890 vs. ExPASy TrEMBL
Match: A0A0A0LWF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569540 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-08
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 37 LRRLVLTCVPSGTTEAFQCGCTVCQESNYELTIKFTRMKCKLSRQR 83
          L  LV  CV +GTTEAF CGC +CQESN+E TIK TRMKCKL +QR
Sbjct: 54 LSGLVRMCVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

BLAST of Chy2G038890 vs. ExPASy TrEMBL
Match: A0A5A7TYV0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001650 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-05
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 201 FLWQDFFNLVVCSTIITCIMEAPTLEEHREVH-SSLHLTTTTPHLMNMGT*INLNGGISN 260
           FLWQDFFNL   STIITCI EAPTLEEHRE H   LH +      + +G  I  NG  S+
Sbjct: 271 FLWQDFFNLAASSTIITCITEAPTLEEHREGHLKQLHAS------IKLGEKILTNGTRSD 330

Query: 261 NSMHQS 266
            +   S
Sbjct: 331 QNFSSS 330

BLAST of Chy2G038890 vs. ExPASy TrEMBL
Match: A0A0A0KJ96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136350 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-05
Identity = 33/44 (75.00%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 8  SQAQFIIHAALKQCGLISFKKLKMVDLMQLRRLVLTCVPSGTTE 52
          SQAQ IIHAALKQCGLISFKKLKMVDLMQLR      V S   E
Sbjct: 39 SQAQSIIHAALKQCGLISFKKLKMVDLMQLRHTFSGIVTSHNDE 82

BLAST of Chy2G038890 vs. ExPASy TrEMBL
Match: A0A0A0KL41 (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_5G168850 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-04
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 1  MENGALSSQAQFIIHAALKQCGLISFKKLKMVDLMQLRRLVLTCVPSGTTEAFQCGCTVC 60
          MEN  LSS+AQFIIHAALKQCGLI FKKLKM  L+Q          +G     + G  VC
Sbjct: 1  MENDVLSSRAQFIIHAALKQCGLILFKKLKM--LIQ---------DAGLYVVVRIGPYVC 54

Query: 61 QESNY 66
           E NY
Sbjct: 61 AEWNY 54

BLAST of Chy2G038890 vs. NCBI nr
Match: KGN66078.1 (hypothetical protein Csa_007319 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.82e-10
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 40 LVLTCVPSGTTEAFQCGCTVCQESNYELTIKFTRMKCKLSRQR 82
          LV  CV +GTTEAF CGC +CQESN+E TIK TRMKCKL +QR
Sbjct: 57 LVRMCVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

BLAST of Chy2G038890 vs. NCBI nr
Match: KAE8648449.1 (hypothetical protein Csa_023675 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 5.80e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0

Query: 221 EAPTLEEHREVHSSLHLTTTTPHLMNMGT 249
           +APTLE HREVHSSLHLTTTTPHLM+MGT
Sbjct: 82  DAPTLEGHREVHSSLHLTTTTPHLMSMGT 110

BLAST of Chy2G038890 vs. NCBI nr
Match: KAA0046419.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.89e-05
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 201 FLWQDFFNLVVCSTIITCIMEAPTLEEHREVH 232
           FLWQDFFNL   STIITCI EAPTLEEHRE H
Sbjct: 271 FLWQDFFNLAASSTIITCITEAPTLEEHREGH 302

BLAST of Chy2G038890 vs. NCBI nr
Match: KAE8648448.1 (hypothetical protein Csa_009404, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 6.85e-05
Identity = 36/64 (56.25%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 2  ENGALSSQAQFIIHAALKQCGLISFKKLKMVDLMQLRRLVLTCVPSGTTEAFQCGCTVCQ 61
          EN  LSSQAQFIIHAALKQCGLI FKKLKM  L+Q          +G     + G  VC 
Sbjct: 2  ENDVLSSQAQFIIHAALKQCGLILFKKLKM--LIQ---------DAGLYVVMRIGPYVCA 54

Query: 62 ESNY 65
          E NY
Sbjct: 62 EWNY 54

BLAST of Chy2G038890 vs. NCBI nr
Match: KAE8648315.1 (hypothetical protein Csa_004659 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 1.21e-04
Identity = 30/44 (68.18%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 8  SQAQFIIHAALKQCGLISFKKLKMVDLMQLRRLVLTCVPSGTTE 51
          SQAQ IIHAALKQCGLI FKKLK  DLMQLR      V S   E
Sbjct: 39 SQAQSIIHAALKQCGLILFKKLKTADLMQLRHTFFGIVTSHNDE 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWF54.5e-0869.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569540 PE=4 SV=1[more]
A0A5A7TYV03.6e-0553.03Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0... [more]
A0A0A0KJ967.9e-0575.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136350 PE=4 SV=1[more]
A0A0A0KL415.1e-0455.38Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_5G168850 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KGN66078.13.82e-1072.09hypothetical protein Csa_007319 [Cucumis sativus][more]
KAE8648449.15.80e-0689.66hypothetical protein Csa_023675 [Cucumis sativus][more]
KAA0046419.11.89e-0584.38beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
KAE8648448.16.85e-0556.25hypothetical protein Csa_009404, partial [Cucumis sativus][more]
KAE8648315.11.21e-0468.18hypothetical protein Csa_004659 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G038890.1Chy2G038890.1mRNA