Chy2G036640 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G036640
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	1,3-beta-glucan synthase
Location	chrH02: 10843781 .. 10844188 (+)
RNA-Seq Expression	Chy2G036640
Synteny	Chy2G036640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGGAATGTTAATGAATCGATATTCGACGGTCAATTTTTACCGCCGTCGCTGAAGGAGATTGTGCCAATCCTGCATGTGGCGAATGAGGTTGAGTCGAGCAATCCCAGAGTGGCATATCTGTGTAAGCTTGCAATAATGCTGTACTGTTAATAGGTTATTATTATAGTGTATGCAGAATTTTAATATGAAACAGTATTAGAAGATAAGTACTTCAATGCTTATGTCGAAATTTTTTATTTAAAACTCCAACACTGTCCAATTGTTGTATTACTTTTGGACTCCGGTTCCACTAAGTGCTTGGTTAACTGTTGGTTTGCTTACTGGCACAGTGCCACCCTACACTGTGGGGGCTGCATAAACAAGTTTGCTATGTACCTTAAGCTTGTGCTAGTGTCACCTTAG

mRNA sequence

ATGACTGGGAATGTTAATGAATCGATATTCGACGGTCAATTTTTACCGCCGTCGCTGAAGGAGATTGTGCCAATCCTGCATGTGGCGAATGAGGTTGAGTCGAGCAATCCCAGAGTGGCATATCTGTGTAAGCTTGCAATAATGCTTGCCACCCTACACTGTGGGGGCTGCATAAACAAGTTTGCTATGTACCTTAAGCTTGTGCTAGTGTCACCTTAG

Coding sequence (CDS)

ATGACTGGGAATGTTAATGAATCGATATTCGACGGTCAATTTTTACCGCCGTCGCTGAAGGAGATTGTGCCAATCCTGCATGTGGCGAATGAGGTTGAGTCGAGCAATCCCAGAGTGGCATATCTGTGTAAGCTTGCAATAATGCTTGCCACCCTACACTGTGGGGGCTGCATAAACAAGTTTGCTATGTACCTTAAGCTTGTGCTAGTGTCACCTTAG

Protein sequence

MTGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCKLAIMLATLHCGGCINKFAMYLKLVLVSP*

Homology

[Close]

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot
Match: Q9SL03 (Callose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=CALS2 PE=2 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ E++ D + +P SL EI PIL VANEVE+SNPRVAYLC+
Sbjct: 23 GNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCR 64

[Close]

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot
Match: Q9LXT9 (Callose synthase 3 OS=Arabidopsis thaliana OX=3702 GN=CALS3 PE=3 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-09
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ ES FD + +P SL EI PIL VANEVESSNPRVAYLC+
Sbjct: 27 GNLGES-FDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCR 67

[Close]

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot
Match: Q9AUE0 (Callose synthase 1 OS=Arabidopsis thaliana OX=3702 GN=CALS1 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          G++ E++ D + +P SL EI PIL VANEVE+SNPRVAYLC+
Sbjct: 23 GSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCR 64

[Close]

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot
Match: Q9LYS6 (Putative callose synthase 6 OS=Arabidopsis thaliana OX=3702 GN=CALS6 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 28/67 (41.79%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 4  NVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCKL-----AIMLATLHCGGCI 63
          N + S  D + +P SL  I PIL VANE+E  NPRVAYLC+      A  +     G  +
Sbjct: 32 NEDASAMDSELVPSSLASIAPILRVANEIEKDNPRVAYLCRFHAFEKAHRMDATSSGRGV 91

Query: 64 NKFAMYL 66
           +F  YL
Sbjct: 92 RQFKTYL 98

[Close]

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot
Match: Q9SHJ3 (Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3)

HSP 1 Score: 47.4 bits (111), Expect = 8.2e-05
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 4  NVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          N +E   D + +P SL  I PIL VAN+++  N RVAYLC+
Sbjct: 40 NEDERPIDSELVPSSLASIAPILRVANDIDQDNARVAYLCR 80

[Close]

BLAST of Chy2G036640 vs. ExPASy TrEMBL
Match: A0A1S3BQ64 (1,3-beta-glucan synthase OS=Cucumis melo OX=3656 GN=LOC103492490 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. ExPASy TrEMBL
Match: A0A5A7TFQ3 (Callose synthase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00330 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. ExPASy TrEMBL
Match: A0A0A0M2L3 (1,3-beta-glucan synthase OS=Cucumis sativus OX=3659 GN=Csa_1G605110 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. ExPASy TrEMBL
Match: A0A6J1DMM9 (1,3-beta-glucan synthase OS=Momordica charantia OX=3673 GN=LOC111021425 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. ExPASy TrEMBL
Match: A0A6J1DL00 (1,3-beta-glucan synthase OS=Momordica charantia OX=3673 GN=LOC111021425 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. NCBI nr
Match: XP_038879408.1 (callose synthase 3 [Benincasa hispida] >XP_038879409.1 callose synthase 3 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.08e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 44
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNIGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. NCBI nr
Match: KAA0042252.1 (callose synthase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 3.86e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 44
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. NCBI nr
Match: XP_022154081.1 (callose synthase 3 isoform X2 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 3.89e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 44
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. NCBI nr
Match: XP_022154079.1 (callose synthase 3 isoform X1 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 3.89e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 44
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. NCBI nr
Match: XP_008451108.1 (PREDICTED: callose synthase 3 [Cucumis melo] >XP_008451110.1 PREDICTED: callose synthase 3 [Cucumis melo] >XP_008451111.1 PREDICTED: callose synthase 3 [Cucumis melo] >XP_008451112.1 PREDICTED: callose synthase 3 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 3.89e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2  TGNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 44
          TGN+ ES+FD + +P SLKEI PIL VANEVESSNPRVAYLC+
Sbjct: 23 TGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLCR 65

[Close]

BLAST of Chy2G036640 vs. TAIR 10
Match: AT2G31960.1 (glucan synthase-like 3 )

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ E++ D + +P SL EI PIL VANEVE+SNPRVAYLC+
Sbjct: 23 GNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCR 64

[Close]

BLAST of Chy2G036640 vs. TAIR 10
Match: AT2G31960.2 (glucan synthase-like 3 )

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ E++ D + +P SL EI PIL VANEVE+SNPRVAYLC+
Sbjct: 23 GNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCR 64

[Close]

BLAST of Chy2G036640 vs. TAIR 10
Match: AT5G13000.1 (glucan synthase-like 12 )

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ ES FD + +P SL EI PIL VANEVESSNPRVAYLC+
Sbjct: 27 GNLGES-FDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCR 67

[Close]

BLAST of Chy2G036640 vs. TAIR 10
Match: AT5G13000.2 (glucan synthase-like 12 )

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-10
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          GN+ ES FD + +P SL EI PIL VANEVESSNPRVAYLC+
Sbjct: 27 GNLGES-FDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCR 67

[Close]

BLAST of Chy2G036640 vs. TAIR 10
Match: AT1G05570.1 (callose synthase 1 )

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-10
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 3  GNVNESIFDGQFLPPSLKEIVPILHVANEVESSNPRVAYLCK 45
          G++ E++ D + +P SL EI PIL VANEVE+SNPRVAYLC+
Sbjct: 23 GSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCR 64

The following BLAST results are available for this feature:

BLAST of Chy2G036640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL03	3.2e-09	64.29	Callose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=CALS2 PE=2 SV=3	[more]
Q9LXT9	4.2e-09	71.43	Callose synthase 3 OS=Arabidopsis thaliana OX=3702 GN=CALS3 PE=3 SV=3	[more]
Q9AUE0	1.2e-08	61.90	Callose synthase 1 OS=Arabidopsis thaliana OX=3702 GN=CALS1 PE=1 SV=2	[more]
Q9LYS6	2.0e-06	41.79	Putative callose synthase 6 OS=Arabidopsis thaliana OX=3702 GN=CALS6 PE=3 SV=2	[more]
Q9SHJ3	8.2e-05	48.78	Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3	[more]

BLAST of Chy2G036640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQ64	1.1e-09	74.42	1,3-beta-glucan synthase OS=Cucumis melo OX=3656 GN=LOC103492490 PE=3 SV=1	[more]
A0A5A7TFQ3	1.1e-09	74.42	Callose synthase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G0...	[more]
A0A0A0M2L3	1.1e-09	74.42	1,3-beta-glucan synthase OS=Cucumis sativus OX=3659 GN=Csa_1G605110 PE=3 SV=1	[more]
A0A6J1DMM9	1.1e-09	74.42	1,3-beta-glucan synthase OS=Momordica charantia OX=3673 GN=LOC111021425 PE=3 SV=...	[more]
A0A6J1DL00	1.1e-09	74.42	1,3-beta-glucan synthase OS=Momordica charantia OX=3673 GN=LOC111021425 PE=3 SV=...	[more]

BLAST of Chy2G036640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879408.1	2.08e-12	74.42	callose synthase 3 [Benincasa hispida] >XP_038879409.1 callose synthase 3 [Benin...	[more]
KAA0042252.1	3.86e-12	74.42	callose synthase 3 [Cucumis melo var. makuwa]	[more]
XP_022154081.1	3.89e-12	74.42	callose synthase 3 isoform X2 [Momordica charantia]	[more]
XP_022154079.1	3.89e-12	74.42	callose synthase 3 isoform X1 [Momordica charantia]	[more]
XP_008451108.1	3.89e-12	74.42	PREDICTED: callose synthase 3 [Cucumis melo] >XP_008451110.1 PREDICTED: callose ...	[more]

BLAST of Chy2G036640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31960.1	2.3e-10	64.29	glucan synthase-like 3	[more]
AT2G31960.2	2.3e-10	64.29	glucan synthase-like 3	[more]
AT5G13000.1	3.0e-10	71.43	glucan synthase-like 12	[more]
AT5G13000.2	3.0e-10	71.43	glucan synthase-like 12	[more]
AT1G05570.1	8.7e-10	61.90	callose synthase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023175	Vta1/Callose synthase, N-terminal domain superfamily	GENE3D	1.25.40.270		coord: 7..57 e-value: 1.9E-10 score: 42.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G036640.1	Chy2G036640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006075	(1->3)-beta-D-glucan biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0008360	regulation of cell shape
cellular_component	GO:0000148	1,3-beta-D-glucan synthase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003843	1,3-beta-D-glucan synthase activity