Chy2G035300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G035300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase III subunit RPC4
Location	chrH02: 9221330 .. 9224286 (-)
RNA-Seq Expression	Chy2G035300
Synteny	Chy2G035300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAGATCCACCCAAAAAAAAAACAGCTGCTCCAAGGAAGGTTTGTTCTGGCTATCTCATCTATCTACTTTGTTTGAAGATTTTTTATTTTCATCCAATACCGATGGAATGGGCTGCTGCAGTTGAAATTTGCTCCAAAAGCACCTGTCCGGCGTATACCAAAACCTGAAGTCAAAGCGTAAGCACATCGCTTTCAAATATTGCAGCACCTTCAATTGTTCCAAATTTCTGCTACAGTCAAAATGTATGTTTGTTTTATGTAGAGAAGTACCAGAGGAGGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGTTTCAATGTACGTCTGCTTTCATTTATTTTCTGTTTCATTTATTATTGAGCAAATAGAATACCCAGTTGTTATACACCCTTGTTCTCTGTTTGTCACTTCAATTTCTTGATTCCTTATTGCAGGAAAGCACCCAGAGGGCAAAGCAAAGAGTTGGGAGAAAAGGCTAGTTCCAACCTCCATAAACTAGTCGTTCTTCATAATTCATAATTCTTCATTTATTTAGTAGATAATTAAATTTTACCTTATTAATCATAATTCTCCATAATTATGATTAATAAGTAGATAATTTTCCATAAACTAGTCATAATTCTCTATTTGTATTTATTTATTCATAATTCTCCATAAACTAGTCATTCTTCATAATTCTCTGTCATAATTCTCTATTTGTATTTATTTATTCATAATTCTCCATAAACTAGTCATTCTTCATAATTCATTTTTGTTCTGGTTTGAACTTTCTGATTTTATTTATTTAGTAGATAATTTTAAATTTTAACTTATTAATCTTTTGATTGTTTGAGATTGGATGTGAAAGATTATTCATGCAGTACTAGTTCTTGATCATGCTTCTTTTCCCCATTGAATGATCGTAGTTGACTATCAATTTTTTTTATTCCTTTTTTCATTTATTAGTCATGATATACAATTTTTTTTTTGGATCGATATGTTTATATTTAGGGTTGTGTGTAACTCTTTATTTATCTATTTGTATATGGGTGATTGAAATTATATGTTAATATATGAATATCTTAGATTATTTTACTGTTACATAGTATCTTTCCTCAAAACAGAGATCTATAAGATCACATGAATCTCTACAGCAGTTTTCCAATCGTGAAAAATTGAGGGAGCAAAACAGTTCAATATTAGGAATTTTTATCATATGTCTAGCCAAAATTGATCACATCATTAAGTTTAGTAGCCACATCATGAGTGTAATGATGAATTTGTCGAATGATGATGATCCATGAAGTTCTGATAATATAACTCAGCATATTAATTATGCATTACGTGGTCTTGCGCTAACTGTACTACCCAGTACATCAGGGAAATACACTGAACTTTCATCTGTTAATGAACCCTACATCTAATTGAAATTTACTATCACAATGACTAGAGATTTTTAGTTCTTTTAACACACCTCCGTTTCATTTGCATGCCTGTTATATTAATATGCAGCGGCACCTACACAAGTTGCATTTGGCTCTGGAGGTTCATCGAGCAGCCTAAGATCATATGGTGTTTCAAAATCTGGAAATAGACCAAGAAATGAAGGTAGGCTAGTAAACTATTAAAATCTCCTCTAGGTGTAATTGCTTGATTTATTGCTGGTGAGAGGCTTTCAATGCGCTAAACTGAAAGATGATTATGCAGATGGAACTCTTCCGGCTAGTACAAGCAAGGAGTATGTAGAACCATGGGTTAGTAATTATTTTCCTCTTCATTTCCTATTTGCATGTTCCTTCTTCATTAGTATGTCAATTTGGTAATTCTATTTTCATTTTACTCCAGGATTATTACAGTTATTATCCTGTAACTCTTCCTCTGCGGAGACCATATTCAGGAAATCCAGGTATCTTTGTAAGTTCATCTTATGTACAGAATTTATAAGGAAAATATTGCAGTATGCAACTGGATTGTTCTGAAATGCACTCTATCCTCTACATAAGTTGTTTGAATACTTCTTATCACTGGTGTACAGTTTTCATGGTGACAACTATACCTGTATCCATGAAAACTGTACCAGCATCTTCTGCATTCTTTATCTATTATTTGCTCTAAGTTTTATGCATTGCTTCATAGATTCTCTAAACGAGGAAGAATTTGGTGAGGCTTCAGAAAACTTCACCTACGATGAAAATACAACAACTGCAGCGATGAATCTTGGTCTATTGGTTAGTAATTATCCCCCTGATGGTATATCCAGAGCCTCTTGTTTCCAATTCTATGTTTAATGGTTGTTTGGCAGGAGGAGAACCCGGAGGCAGATGTCTTTTTTTTACAATTACCACCTATGGTGCCTATGATAAAGCAATCTTCTTCAGTAGAAGACATGGGGCCAGGCAACAGCTCAGAACAAAACAAGGCCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAACTGCTTGTGTATAGGAGTGGTGCTGTCAAGTTAAAACTTGGTGATATCATATATGATGTGAGTTTATTTATTTATTTATTTATTGTTTTCTCCCATAAACATGAGCATGCTAAGTTATTTACTTTTTTATCAACTTGAATGATCTCTTGAGATGAAATATTTTATATTAGAAGCATGGACTCTCTGCCTCAGCATTTTAAATTCTTTACTTGATGAAAATATTTAATTTACTATTCTATTTATGTTATAGGAATCTCTTATTTACTTAAGGGCTATTGTTAGATGAAATCTATTCGGATTTTGTGTTCCTTCTCACACCCGTTCTAAAATCTGGACAGGTTTCTTCTGGAATGGATTGTGGCTTTGCTCAAGAAGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGATGTGGACTCGATGTTAAAGAATATTGAGGATTTATAA

mRNA sequence

ATGGAGCAAGATCCACCCAAAAAAAAAACAGCTGCTCCAAGGAAGTTGAAATTTGCTCCAAAAGCACCTGTCCGGCGTATACCAAAACCTGAAGTCAAAGCAGAAGTACCAGAGGAGGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGTTTCAATGAAAGCACCCAGAGGGCAAAGCAAAGAGTTGGGAGAAAAGCGGCACCTACACAAGTTGCATTTGGCTCTGGAGGTTCATCGAGCAGCCTAAGATCATATGGTGTTTCAAAATCTGGAAATAGACCAAGAAATGAAGATGGAACTCTTCCGGCTAGTACAAGCAAGGAGTATGTAGAACCATGGGATTATTACAGTTATTATCCTGTAACTCTTCCTCTGCGGAGACCATATTCAGGAAATCCAGATTCTCTAAACGAGGAAGAATTTGGTGAGGCTTCAGAAAACTTCACCTACGATGAAAATACAACAACTGCAGCGATGAATCTTGGTCTATTGGAGGAGAACCCGGAGGCAGATGTCTTTTTTTTACAATTACCACCTATGGTGCCTATGATAAAGCAATCTTCTTCAGTAGAAGACATGGGGCCAGGCAACAGCTCAGAACAAAACAAGGCCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAACTGCTTGTGTATAGGAGTGGTGCTGTCAAGTTAAAACTTGGTGATATCATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCTCAAGAAGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGATGTGGACTCGATGTTAAAGAATATTGAGGATTTATAA

Coding sequence (CDS)

ATGGAGCAAGATCCACCCAAAAAAAAAACAGCTGCTCCAAGGAAGTTGAAATTTGCTCCAAAAGCACCTGTCCGGCGTATACCAAAACCTGAAGTCAAAGCAGAAGTACCAGAGGAGGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGTTTCAATGAAAGCACCCAGAGGGCAAAGCAAAGAGTTGGGAGAAAAGCGGCACCTACACAAGTTGCATTTGGCTCTGGAGGTTCATCGAGCAGCCTAAGATCATATGGTGTTTCAAAATCTGGAAATAGACCAAGAAATGAAGATGGAACTCTTCCGGCTAGTACAAGCAAGGAGTATGTAGAACCATGGGATTATTACAGTTATTATCCTGTAACTCTTCCTCTGCGGAGACCATATTCAGGAAATCCAGATTCTCTAAACGAGGAAGAATTTGGTGAGGCTTCAGAAAACTTCACCTACGATGAAAATACAACAACTGCAGCGATGAATCTTGGTCTATTGGAGGAGAACCCGGAGGCAGATGTCTTTTTTTTACAATTACCACCTATGGTGCCTATGATAAAGCAATCTTCTTCAGTAGAAGACATGGGGCCAGGCAACAGCTCAGAACAAAACAAGGCCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAACTGCTTGTGTATAGGAGTGGTGCTGTCAAGTTAAAACTTGGTGATATCATATATGATGTTTCTTCTGGAATGGATTGTGGCTTTGCTCAAGAAGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGATGTGGACTCGATGTTAAAGAATATTGAGGATTTATAA

Protein sequence

MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAKQRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPPMVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL*

Homology

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BLAST of Chy2G035300 vs. ExPASy Swiss-Prot
Match: Q5E9Z7 (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-09
Identity = 54/208 (25.96%), Postives = 90/208 (43.27%), Query Frame = 0


Query: 95  PRNEDGTLPASTSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEEEFGEASENFTYD 154
           P+ ED  +     K   EP D      +  PLR  R   G P  ++  E           
Sbjct: 205 PKEEDMEVDMPAVKVKEEPRDEDEEAKMKAPLRAARKIPGLPKDVSVAEL---------- 264

Query: 155 ENTTTAAMNLGLLEENPEADVFFLQLPPMVPMIKQSSSVEDMGPGNSSE--------QNK 214
                    L  L    E ++ FLQLP  +P    +  ++ +     SE        Q K
Sbjct: 265 ---------LRELSLTQEEELLFLQLPDSLPGQPPTQDIKPIKTEVQSEDGQMVVIKQEK 324

Query: 215 ASQPR--QKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINV 274
             + R  + TC++ +L  G +GKLL+ +SG V+L LG +  DV+ G  C F QE+ ++ +
Sbjct: 325 DREARLAENTCTLADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGL 384

Query: 275 EGKR---CCIVGELSKRAILTPDVDSML 288
              R     ++G +  + + +P+ +S+L
Sbjct: 385 GDSRTGDMTVLGHIKHKLVCSPNFESLL 393

[Close]

BLAST of Chy2G035300 vs. ExPASy Swiss-Prot
Match: P05423 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-08
Identity = 36/131 (27.48%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 170 EADVFFLQLPPMVPMIKQSSSV-----EDMGPGN-----SSEQNKASQPRQKTCSMNELP 229
           E ++ FLQLP  +P    +  +     E  G          E+++ ++  +  C++ +L 
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 230 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKR---CCIVGELSKR 288
            G +GKLL+ +SG V+L LG +  DV+ G  C F QE+ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]

BLAST of Chy2G035300 vs. ExPASy Swiss-Prot
Match: Q91WD1 (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-08
Identity = 35/131 (26.72%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 170 EADVFFLQLPPMVPMIKQSSSV-----EDMGPGN-----SSEQNKASQPRQKTCSMNELP 229
           + ++ FLQLP  +P    +  +     E  G          E+++ ++  +  C++ +L 
Sbjct: 263 DEELLFLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLT 322

Query: 230 SGSMGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKR---CCIVGELSKR 288
            G +GKLL+ +SG V+L LG +  DV+ G  C F QE+ ++ +   R     ++G +  +
Sbjct: 323 EGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]

BLAST of Chy2G035300 vs. ExPASy Swiss-Prot
Match: O74857 (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 44/173 (25.43%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 137 LNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVF-----FLQLPPMVPMIKQSSSV 196
           +N+E+  E  E    D    + A +LGL E+    D F      +Q P  +P     + V
Sbjct: 161 INKED--EEQERVALD--LQSLAQHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFMGDADV 220

Query: 197 EDMGPGNSSEQNKASQPR------------QKTCSMNEL----------PSGSMGKLLVY 256
           + + P +  ++ +A +              ++  ++++L          P+G +G L V+
Sbjct: 221 DPVWPSSEVKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVH 280

Query: 257 RSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPD 283
           +SG   L++G + + V SG DC F QE+A ++ + KR   +G   +R I++PD
Sbjct: 281 QSGKTTLEMGGVNFVVQSGSDCLFLQEIAVVDYDSKRIWNLGSFERRMIVSPD 329

[Close]

BLAST of Chy2G035300 vs. ExPASy Swiss-Prot
Match: Q8T1V7 (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-06
Identity = 35/129 (27.13%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 168 NPEADVFFLQLPPMVPMIKQSSSVEDMGPGNSSEQNKAS-----QPRQKTCSMNELPSGS 227
           NP+  +    +P     I +++ +ED  P    E ++ +      P     S+ E+PSG 
Sbjct: 304 NPDGSITTTTIP-----INENTKIEDQPPPPPKELDEKAFVPVIYPGDFPPSIKEMPSGK 363

Query: 228 MGKLLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEG-----KRCCIVGELSKRA 287
           +G L +Y+SG   LK+G + YD+SSG    F +EV     +G       C  +G  S+  
Sbjct: 364 LGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCYTLGIPSQHL 423

[Close]

BLAST of Chy2G035300 vs. ExPASy TrEMBL
Match: A0A0A0LWX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 9.9e-153
Identity = 283/293 (96.59%), Postives = 288/293 (98.29%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQ+PPK KTAAPRKLKFAPKAPVRRIPKPEVKAEV E+ADAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQNPPKNKTAAPRKLKFAPKAPVRRIPKPEVKAEVAEDADAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASEN TYDENTTTAAMNLGLLEENPEADV FLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENLTYDENTTTAAMNLGLLEENPEADVLFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSSSVEDMG GNSSEQNKASQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLGD
Sbjct: 181 MVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELPSGSIGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
           IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
Sbjct: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293

[Close]

BLAST of Chy2G035300 vs. ExPASy TrEMBL
Match: A0A1S3BPR1 (DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC103492360 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.9e-148
Identity = 273/293 (93.17%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK KTA PRKLKFAPKAP+RR+PKPEVKAE+ E+ DAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQDPPKNKTAPPRKLKFAPKAPIRRVPKPEVKAEMAEDNDAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPE DVFFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPETDVFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSS+VE+MG GN SEQN ASQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD
Sbjct: 181 MVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
           IIYDVSSGMDCGFAQEVAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Sbjct: 241 IIYDVSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAILTPDVDSMLRNIEDL 293

[Close]

BLAST of Chy2G035300 vs. ExPASy TrEMBL
Match: A0A5A7UQN3 (DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001760 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 1.0e-133
Identity = 255/293 (87.03%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK KTA PRKLKFAPKAP+RR+PKPEVKAE+ E+ DAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQDPPKNKTAPPRKLKFAPKAPIRRVPKPEVKAEMAEDNDAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPE DVFFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPETDVFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSS+VE+MG GN SEQN ASQ RQKTCSMNELPSGSM  + +       LK G 
Sbjct: 181 MVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELPSGSMDFVFLL---TPVLKSG- 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
               VSSGMDCGFAQEVAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Sbjct: 241 ---QVSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAILTPDVDSMLRNIEDL 286

[Close]

BLAST of Chy2G035300 vs. ExPASy TrEMBL
Match: A0A6J1D2P1 (DNA-directed RNA polymerase III subunit rpc4 OS=Momordica charantia OX=3673 GN=LOC111016454 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.3e-132
Identity = 243/293 (82.94%), Postives = 270/293 (92.15%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK  T A RK+KFAPKAP RR+PKPEVKAE+ EEADAAQA+DLLKRFNEST RAK
Sbjct: 1   MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNESTMRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           Q+VG+KAAPTQVAFGSGG+S+++RSYG+ K+GNRPRNEDGTLP+S SKEYVEPWDYYSYY
Sbjct: 61  QKVGKKAAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSSISKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSG+PDSLNEEEFGEASEN TYDE+ TT AM+LGLLEENPE +VFFLQ+PP
Sbjct: 121 PVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVP+ KQSS+VE M   +SSEQ+K S+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLGD
Sbjct: 181 MVPVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
           I+YDVSSGMDCGFAQ+VAAINVEGK CCIVGELSKRAILTPDVDSMLK+IEDL
Sbjct: 241 IVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL 293

[Close]

BLAST of Chy2G035300 vs. ExPASy TrEMBL
Match: A0A6J1F0U0 (DNA-directed RNA polymerase III subunit RPC4-like OS=Cucurbita moschata OX=3662 GN=LOC111441105 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 7.6e-129
Identity = 243/293 (82.94%), Postives = 265/293 (90.44%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDP K   AA RK+KFAPKAP RRIPK EVKAEV E ADAAQARDLLKRFNE+TQRAK
Sbjct: 1   MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNETTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           Q+VG+KAAPTQVAFG+GG+SSSLR+YG SK+GN+ RNEDGTLP  +SKEYVEPWDYYSYY
Sbjct: 61  QKVGKKAAPTQVAFGTGGTSSSLRTYGSSKAGNKLRNEDGTLP--SSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNE EFGEASE  TYDENTTT AM+LGLLE+NPE ++FFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVP+ +QSS+ E M   NS EQNK SQP QKTCS+NE PSGSMGKLLVYRSGAVKLKLG+
Sbjct: 181 MVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGN 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
           I+YDVSSGMDCGFAQE+AAINVEGKRCCIVGELSKRA+LTPDVDSMLKNIEDL
Sbjct: 241 IVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL 291

[Close]

BLAST of Chy2G035300 vs. NCBI nr
Match: XP_004144123.1 (DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >XP_031736467.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >XP_031736470.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >KGN66283.1 hypothetical protein Csa_007538 [Cucumis sativus])

HSP 1 Score: 550 bits (1417), Expect = 8.60e-197
Identity = 283/293 (96.59%), Postives = 288/293 (98.29%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQ+PPK KTAAPRKLKFAPKAPVRRIPKPEVKAEV E+ADAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQNPPKNKTAAPRKLKFAPKAPVRRIPKPEVKAEVAEDADAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASEN TYDENTTTAAMNLGLLEENPEADV FLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENLTYDENTTTAAMNLGLLEENPEADVLFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSSSVEDMG GNSSEQNKASQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLGD
Sbjct: 181 MVPMIKQSSSVEDMGSGNSSEQNKASQPRQKTCSMNELPSGSIGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293
           IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
Sbjct: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293

[Close]

BLAST of Chy2G035300 vs. NCBI nr
Match: XP_008450913.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo])

HSP 1 Score: 536 bits (1380), Expect = 3.74e-191
Identity = 273/293 (93.17%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK KTA PRKLKFAPKAP+RR+PKPEVKAE+ E+ DAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQDPPKNKTAPPRKLKFAPKAPIRRVPKPEVKAEMAEDNDAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPE DVFFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPETDVFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSS+VE+MG GN SEQN ASQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD
Sbjct: 181 MVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293
           IIYDVSSGMDCGFAQEVAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Sbjct: 241 IIYDVSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAILTPDVDSMLRNIEDL 293

[Close]

BLAST of Chy2G035300 vs. NCBI nr
Match: XP_038878504.1 (uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878505.1 uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878507.1 uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878508.1 uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878509.1 uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878510.1 uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878511.1 uncharacterized protein LOC120070724 [Benincasa hispida])

HSP 1 Score: 516 bits (1330), Expect = 1.56e-183
Identity = 261/293 (89.08%), Postives = 277/293 (94.54%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK KTAAPRKLKFAPKAP+RRIPKPEVKAE+ E+ADAAQARDLLKRFNEST R K
Sbjct: 1   MEQDPPKNKTAAPRKLKFAPKAPIRRIPKPEVKAEIAEDADAAQARDLLKRFNESTLRTK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           Q++GRKAAPTQVAFGSGG+SS+LRSYGVSK+GNRPRNEDGTLP+STSKEYVEPWDYYSYY
Sbjct: 61  QKIGRKAAPTQVAFGSGGTSSTLRSYGVSKAGNRPRNEDGTLPSSTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASENF YDENTTT AM+LGLLEENPE DVFFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFAYDENTTTPAMDLGLLEENPEMDVFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPM+KQSS+VE  G  NS EQ+K SQPRQK C MNELPSGSMGKLLVYRSGAVKLKLGD
Sbjct: 181 MVPMVKQSSTVEGTGAANSLEQSKGSQPRQKACLMNELPSGSMGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293
           IIYDVSSGMDCGFAQ+VAA+NVEGK CCIVGELSKRAILTPDVDS+LKNIEDL
Sbjct: 241 IIYDVSSGMDCGFAQDVAAVNVEGKCCCIVGELSKRAILTPDVDSVLKNIEDL 293

[Close]

BLAST of Chy2G035300 vs. NCBI nr
Match: KAA0055789.1 (DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo var. makuwa])

HSP 1 Score: 487 bits (1253), Expect = 6.50e-172
Identity = 255/293 (87.03%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK KTA PRKLKFAPKAP+RR+PKPEVKAE+ E+ DAAQARDLLKRFNESTQRAK
Sbjct: 1   MEQDPPKNKTAPPRKLKFAPKAPIRRVPKPEVKAEMAEDNDAAQARDLLKRFNESTQRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           QRVGRKAAPTQVAFGSGGSSS+LRSYGVSK+GNRPRNEDGTLPASTSKEYVEPWDYYSYY
Sbjct: 61  QRVGRKAAPTQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPE DVFFLQLPP
Sbjct: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPETDVFFLQLPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVPMIKQSS+VE+MG GN SEQN ASQ RQKTCSMNELPSGSM  + +       LK G 
Sbjct: 181 MVPMIKQSSTVENMGSGNVSEQNSASQTRQKTCSMNELPSGSMDFVFLLTP---VLKSGQ 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293
               VSSGMDCGFAQEVAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Sbjct: 241 ----VSSGMDCGFAQEVAAINMEGKHCCIVGELSKRAILTPDVDSMLRNIEDL 286

[Close]

BLAST of Chy2G035300 vs. NCBI nr
Match: XP_022147557.1 (DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia])

HSP 1 Score: 482 bits (1240), Expect = 8.01e-170
Identity = 243/293 (82.94%), Postives = 270/293 (92.15%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEEADAAQARDLLKRFNESTQRAK 60
           MEQDPPK  T A RK+KFAPKAP RR+PKPEVKAE+ EEADAAQA+DLLKRFNEST RAK
Sbjct: 1   MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNESTMRAK 60

Query: 61  QRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSYY 120
           Q+VG+KAAPTQVAFGSGG+S+++RSYG+ K+GNRPRNEDGTLP+S SKEYVEPWDYYSYY
Sbjct: 61  QKVGKKAAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSSISKEYVEPWDYYSYY 120

Query: 121 PVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLPP 180
           PVTLPLRRPYSG+PDSLNEEEFGEASEN TYDE+ TT AM+LGLLEENPE +VFFLQ+PP
Sbjct: 121 PVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPP 180

Query: 181 MVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGD 240
           MVP+ KQSS+VE M   +SSEQ+K S+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLGD
Sbjct: 181 MVPVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGD 240

Query: 241 IIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 293
           I+YDVSSGMDCGFAQ+VAAINVEGK CCIVGELSKRAILTPDVDSMLK+IEDL
Sbjct: 241 IVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL 293

[Close]

BLAST of Chy2G035300 vs. TAIR 10
Match: AT5G09380.1 (RNA polymerase III RPC4 )

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-59
Identity = 138/294 (46.94%), Postives = 197/294 (67.01%), Query Frame = 0


Query: 1   MEQDPPKKKTAAPRKLKFAPKAPVRRIPKPEVKAEVPEE-ADAAQARDLLKRFNESTQRA 60
           MEQ PP       RK+KFAPKAP +R+PKPEVK EV E+ +++AQA +LL+R NE + R 
Sbjct: 1   MEQKPP------VRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLR- 60

Query: 61  KQRVGRKAAPTQVAFGSGGSSSSLRSYGVSKSGNRPRNEDGTLPASTSKEYVEPWDYYSY 120
           K +  +K   +QVA+  GG  +S RS   +K  NR     G+  ++   EY EPWDYYSY
Sbjct: 61  KPKADKKVPASQVAW-LGGVVNSTRS---NKYLNRSNGAYGS-TSTQEIEYKEPWDYYSY 120

Query: 121 YPVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLEENPEADVFFLQLP 180
           YP+TLP+RRPY+G+P+ L+ EEF +A     + E++   A NLGL+E++ E  +FF++L 
Sbjct: 121 YPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRL- 180

Query: 181 PMVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLG 240
           P VP+   S+  E++     +  N      +KT  +  LP G MGKLLVY+SGAVK+KLG
Sbjct: 181 PSVPL--ASTPTENL----ETRPNIKGPVEKKTVDLKALPEGYMGKLLVYKSGAVKMKLG 240

Query: 241 DIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL 294
           +++YDVS G+   FAQ+V  +N E K CC+VG++ K A+LTPD+DS+LK+IE++
Sbjct: 241 EVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSILKDIENI 272

[Close]

BLAST of Chy2G035300 vs. TAIR 10
Match: AT4G25180.1 (RNA polymerase III RPC4 )

HSP 1 Score: 153.3 bits (386), Expect = 3.0e-37
Identity = 103/308 (33.44%), Postives = 167/308 (54.22%), Query Frame = 0


Query: 14  RKLKFAPKAPVRRIP-KPEVKAEVPEEADAAQARDLLKRFNESTQRAKQRVGRKAAPTQV 73
           R+ +  P  P RR+P  P    E  E+ +  +A    ++F+      + +   KA+  +V
Sbjct: 10  RRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKAS---RQFDRRIVGRRPKTETKASSPEV 69

Query: 74  AFGSGGSSSSLRSYGVSKSGNRPRNE-DGTLPAS------------------------TS 133
           AF    S  ++RS+GV K  ++P ++ + + PAS                        T 
Sbjct: 70  AFQPSLSPLAIRSFGVPKEDDKPNSDVNPSSPASILPAVSSVTAAQEDGEEVHNFVTRTG 129

Query: 134 KEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEEEFGEASENFTYDENTTTAAMNLGLLE 193
            +YVEPWDY  SYYP  LPLR+P SG+ + L++EEFGE ++N  YDENT  +A  LGL  
Sbjct: 130 DDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTS 189

Query: 194 -ENPEADVFFLQLPPMVPMIKQSSSVEDMGPGNSSEQNKASQPRQKTCSMNELPSGSMGK 253
            ++ +  +F  ++P  +P++KQ++       G +++++        +     LP G MGK
Sbjct: 190 VQHSKKQMFIFKIPDCLPVVKQTT-------GATTKRSVREYSSGISNPFEGLPEGFMGK 249

Query: 254 LLVYRSGAVKLKLGDIIYDVSSGMDCGFAQEVAAINVEGKRCCIVGELSKRAILTPDVDS 294
           +LVY+SGAVKLK+GD ++DVS G       +V AI+++G+ C  +G  +K   +TPDV+S
Sbjct: 250 MLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVTVTPDVES 307

The following BLAST results are available for this feature:

BLAST of Chy2G035300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5E9Z7	5.8e-09	25.96	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
P05423	1.7e-08	27.48	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
Q91WD1	2.9e-08	26.72	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
O74857	1.9e-07	25.43	DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai...	[more]
Q8T1V7	6.0e-06	27.13	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Chy2G035300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX7	9.9e-153	96.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595870 PE=4 SV=1	[more]
A0A1S3BPR1	1.9e-148	93.17	DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5A7UQN3	1.0e-133	87.03	DNA-directed RNA polymerase III subunit RPC4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1D2P1	3.3e-132	82.94	DNA-directed RNA polymerase III subunit rpc4 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1F0U0	7.6e-129	82.94	DNA-directed RNA polymerase III subunit RPC4-like OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of Chy2G035300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144123.1	8.60e-197	96.59	DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus] >XP_031736467.1 D...	[more]
XP_008450913.1	3.74e-191	93.17	PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo]	[more]
XP_038878504.1	1.56e-183	89.08	uncharacterized protein LOC120070724 [Benincasa hispida] >XP_038878505.1 unchara...	[more]
KAA0055789.1	6.50e-172	87.03	DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo var. makuwa]	[more]
XP_022147557.1	8.01e-170	82.94	DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]	[more]

BLAST of Chy2G035300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09380.1	3.7e-59	46.94	RNA polymerase III RPC4	[more]
AT4G25180.1	3.0e-37	33.44	RNA polymerase III RPC4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..104
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 8..97
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 105..292
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 172..283 e-value: 7.8E-24 score: 84.8
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 8..97
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 105..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G035300.1	Chy2G035300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity