Chy2G035070 (gene) Cucumber (hystrix) v1

Overview
NameChy2G035070
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTHO complex subunit 6
LocationchrH02: 9032389 .. 9039424 (-)
RNA-Seq ExpressionChy2G035070
SyntenyChy2G035070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGTCTTCTAGATGGCTTGAAGTAGATTTCAACTGGCAAGTTGCAACCCACATGCCTTCTGTAAGTCAGTCTTCAATTACTATGCCTTAGAAACTCCAAGAACACAAAAAACACGAGCACTCAAAGATAGACATATTACAATATATCAATAGCCTTTCGAGATAGCTTTCTTTGCCAAATTTCCACCCTTGAAATTCTTTCAATTCTTCCAACCTTGTTCCCAACTCACATCCTTTATTTATAATAAAAACCAACTCTCTAGCTAATTACTAATATGCTCTCCCCAACAAACATGCATACTAATAGTCCTAATATATTCATATCTAGGTTCTTGACTTCACCCACACTCCCAACCTCCTTTTCTTAGACTGTAATAATTCTTTACCCAAGGACTTTGGATATTGTTTACGCACTAGCTTTTTCAGTACAACATTTATGGGGTTTGAGGGATTGAATCTCCAACCACTTAGGTGAAAGCCTATTCCAATTATTGTTTAGCTAAGCTTTTTTTTTCTTTTTTTTTTTTTGTTTACACACTAGTTAATGGCTATTAAACCACCAATTCATCCAAAAGCTTAAGCTAGTGGTTGAAGGCAAATTTAATTATATATCACCAACACTCCCCCGCACTTGTGGGCTTGAAATATTTGAAAGGCCCAACAAGTGGAATCAATTTTAATTGGGGAAGAAACGACAATGCAGGGGCTTGAACACAGAACCTCCCTGAACCACCTGCTCTGATACCATATTAAACCACCAATTAGGGTTTCGAATGGCCATTAGCTTCCTCCTCCATTAGGTTTGAGTTTAGGTTACCTTCCGCTGACCTTTTGTCGACACCACCCATACCATAAGAAGCCCCACCTCCAGACGCCCAAGTCTGTCTTCGCCGATCGTCGGAAAACACCGCGCGTGGCCTTCACGCGCCGCCGGAATTTCCTTAGTCGTCACCCACGCGCCGGCGCGTGAGAGCGCGTGAGACGTCCGATTTGTCCTCCGTCTTCTGGGCTTGTCTCGAACCATTGTTTCCGCTCAGTCTGTACCATTGGGTCTATCAAATAGCATTCGGGTTCGACGAAAACCGAAGGTTACACTATTAGTTTTGGGTCCTTTTCCAATTTTACAGCTGTTTGGATTGATTCTCTCTTTGTTTGTGTGGACTACAATCATTGTGACTTCAATATGGCCGACATAAAAAATTTGGTAGTCTCCAACGTTATTCCCTTAGCCTCTAAGATCACAGAACATAAGTTAAATGGATCTAATTATTACGATTGGCGTCGGACAATTTTATTTTATTTGAGAAGTACTGATATGGATGATCATATGACCGAAGATCCCCCAGAAGATGCAAAGCAAAAGAAGGATTGGCTTCGTGATGATGCCCGTTTATATCTTCAGATCAAAAACTCAATTGAGAGTGAGATAATTGGATTGGTTGATCACTGTGAGTCGGTTAAAGAACTTCTGGAATTTTTAGAACTTCTATATTCAGGTAAAGAGCAACTGCATAGAATGTTTGAAGTTTGTATGCAATTTTTTCGTGCGGAACAGAAAGCTGAGTCTGTCACCAGCTACTTTATGCGGCTTAAGAAGATCACCGCCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGCTCAACGAGAGAAGATGGCTGTCATGATTTTTTTGAATGGACTTTTACCTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCTAAGATTCCATCATTAGATGATGCCTTCACTCGCGTCCTTCGCATTGAAAGCTCTCCGACGGGTGTGTCTATTCCTCAACCCAATAGTGCTCTCTTTAGCAAGAACAATAATCCTCGGGCAACTCAGAGGAATAGTATTGATCATCGAAAACCAGATTCTGTAGAGATTGTTTGTAACTACTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCAGAAATTGTTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGTGATATACCAGAGGCTTCTGTTACTATTTCCGCAGATGAGTTTGCTAAGTTTCAGAATTACCGAGATTCATTACAAGCGTCATCTTCCTCTACTCCGGTTGCATCCACTGTTGCCCCAGGTAATACAAAATGTCTTCTTACATCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGTAATCCTCACCTATTTTCTAGACCGTTGTCCCCTGCCCCTTTTCCATCTGTTACATTGGCCGATGGCTCCACATCTTCTGTTCTTGGCTCTGGCACTATTCACCTTACCCCATCATTTTCTCTCTCTTCTGTGTTACATTTGCCTAACTTATCCTTTAATTTAATTTCTACTAGTCAACTTACTCATGACCTCAATTGTGTTGTCATGTTCTTTTCTGGTTATTGCTTGTTTCAGGATCGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTCGGGAGGCCTTTATCTCTTTGATCATCAAGTATCGCAAGCTGTGGCGTGTCCTGTCGTTCCCTCTCCTTTTGAAATCCATTGTCGTTTAGGTCATCCATCTTTGTTCGTGTTGAAGAAACTTTATCCAGAATTTAGGTCTTTGTCCTCTTTAAATTGTGATTCGTGTCAATTTGCTAAATTTCATCGTCTTAGTTCGAGTCCTCGAGTCGATAAACGAGCAATTGCTCCATTTGAGTTAGTTCATTCTGATATTTGGGGTCCGTGTCCAGTTGTATCTCAAACAAGATTTCGTTATTTTGTTACTTTTGTTGACGATCATTCTCGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTGAGTTATTATCTCACTTCTGTGCCTTTCATACTGAGATAAAAAACCAGTTTAATGTTTCTATCAAAACTTTCCGTACTGATAATGCGGGTGAATACTTTTCTCATTCTCTTGGCTCTTACTTGTGTGAACATGGCATTATTCATCAGTCTTCCTGTGCTGACACTCCATCTCAAAATGGTGTTGCAGAACGAAAAATTAGGCATTTACTTGAAACTGCCCGTGCTTTATCGTTTCAAATGCATGTTCCAAAAACCTTTTGGGCGGATGCTGTCTCTACAGCTTGTTTTTTGATTAATAGAATGCCTTCCTCTGTTCTTAATGGTGAGATTCCCTACCGTGTTCTTTTTCCTACCAAGAATTTGTTTCCTATTGCTCCTAAGATATTTGGTTGTGTCTGTTTTGTTCGCGACGTTCGTCCTCATCATACTAAGTTAGATCCCAAATCCTTGAAGTGTATCTTCTTGGGTTATTCACGTGTTCAAAAGGGTTATCGTTGTTATTGTCCTACCCTTAAAAGGTATCTGGTTTCGCCTGATGTTGCATTTTTTGAGGATACACCCTTTACTTCATCACCATCGAGTTCGTGTCAGGGGGAGGATGACAATTTTTTTTATATATGAGGTTACCTCTCCCACACCATCCTTGTCTATTGATGTGCCTCCTTCCCGCCCGTTGATTTCTCAAGTCTACTCACGACGACCTCCACCACAACCTTCATACTCATGTCCTCCATCAATGCTTCCTTCATCATGTGATCCGGGGCCAAGTGATGATCTTCCCATTGCTCTTCGCAAAGGTAAACGTAAGTGTACTTACCCCGTTTCTTCCTTTATTTCCTATCACCAGTTATCTCCCTCCACATATGCTTTTATTACGTCTCTTGAGTCCACATCTATTCCTAACTCTGTTCATGAAGCTTTATCTCATCCTGGCTGGCAAAATGCAATGATTGAGGAGATGACTGCTTTAGATGATAATGGTACTTGGGATTTGGTATCTCGTCCTGCAGGAAAGAAGGCCATTGGTTGTAAATGGGTGTTTGCTGTCAAGATGAATCCTGATGGAACAGTGGCTCGATTGAAAGCTCGCCTTGTTGCCAAAGGTTATGCTCAAATCTATGGAACTGATTATTCAGATACATTCTCTCCAGTTGCCAAATTAACTTCCATTCGTCTATTTCTTTCCATGGCTGCTACCCATAAATGGCCTTTGCATCAACTTGACATTAAGAATGCTTTTCTTCACGGTGATCTTCAAGAGGAAGTTTATATGGAACAACCACCTGGGTTTGTTGCTCAGGGGGAGAGTGATAAAGTATGTCGCCTTCGAAAATCTCTGTATGGTTTAAAACAGAGTCCTCGTGCGTGGTTTGGTAAGTTTAGTCAAGCTCTTGTATGCTTTGGTATGAAGAAGAGTACATCTGATCATTCGGTTTTCTATCGCCGATCTGATAAGGGTATAGTTCTACTAGTTGTATATGTTGATGATATTGTTATTACTGGAAATGATGCATTGGGTATTTCGTCTCTCAAAACTTTTCTTCAGGGTCAGTTTTATACGAAAGATTTGGGCCAATTGAAATATTTTTTGGGTATTGAAGTGATGAGAAGCAAGAAAGGTATTTATTTGTCTCAACGAAAATATGTACTTGATTTGTTGTCTGAGACAGGAAAATTAGGAGCCAAACCAAGTGGCACTCTGATGACGCCAAATCAGCAACTTGTTAAAGAAGGAGAATTATGTAAAGATCCTGATAGATATAGGAGATTAGTTGGGAAGTTGAACTACTTAACAGTGACTCGACCAGACATTGCTTATTCTGTAAGTGTTGTAAGTCAATTCATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGCTGCTCCTGGACGTGGGATCTTATACAAAGATCATGGACATACGAGAGTTGAATGTTTTTCTGATGCTGATTGGGCGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTCTTTGTAGGTGGCAACTTAGTATCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATCACCGTGCCAGCTAAATTATGGTGTGATAATCAAGCTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGAAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAGCAAGGATAAACTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGAGGGGGAGTGTTATGATATATATATATATTTATATATATATCATATGTCCTTTATTGTAATTGTACATAGTCTCTAGGGTTTAGTTTATTCTCTATATAAATATGTAACATTCCTTTGACTAAACATAATAAGAAATATACTTCTCTGAATTCGAGCTTACAATGGCAAGCTCACTAGTTAGAACTTCCTTTTTAAGGACTTCAACCTTTTGGCAATGAAGTTTTGAAAAAGCGAGTTTGGTTCACGTTCACTTAGAAAATGTCAATTGTAAATTTGAAACAATGCTCCATCGTTTTTCATTTCAGTTCTATGCAAAAAATATGAAAAAGTTGTAGACGTGACTTGCATTTTGCTGAAAACATATCTCTTGCTGCATTGATTGGTACAATGGAGTGGCACTCATGTGATGCTTTTTTTTATGCTAGGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAGTGAGTCATTCTCCTCGAACTGATTATACTTCCACATTTTAATTGATGGACACTAGCTCGCAATTTGGTATTGGTAAAAAATCTGTCTGTCACGTTTTCATTTTTCATTAGATGATCAGACAAGATATATGTATCTATTTCCAAATTTCTTGTACATGATTTAGTGCAACAAAAAGGTCATTTTGCTTGCATAATTATTGTCAGACTTACAAGTTAAGAAGCATATATATTATGACCATGATACGACATGAGCCTAGGAAGAAGTTATCTAGAAAACTAGCACGAGTAAATCAAATACTGTCATCTTCAATATCTATTGCTATACCAGATTTTTTTGTCACCATTATATGTTCATTATTGTCTCTCCATGACCAGATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCTGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTATGTATAACTTAACTCCTTTTGTCTTTTGGTGTCCTTAGTCCTCTCTTTGGAACTTCTTCATGTCTCTCAATTTAGCGTGACATTATGGGAAAATTAGAAGTTAGCGATCCCTTGGAACTGAGTATTGGACTCTGAAGCCAACTCCAATGGAGCAACACTTTATATGCAAACCTTGGTGTTGTTGGATTTAGTTTTTAGGTGCTATCATCACTAAGTAAAGAATTCAACATCATATAATCCGTTAAGGTTTTTGGTTTAGTGATGATTTAGCCTGGTATCAGAAGTTCTATGTTCGAACCCCCGTAGTATCATCGTTTCTCCAATTAATATTGATTCCTACCTTCTACAAAATTTTCAAGTCCACAGGTGAAGTAGAGGGAGGGTTGAAGTGTTTTGATTTAATCAAATTTACCATAATCCATCAATTTAAGCTTTTGAGTTTAGTCATGATATAGCAAATATTTCATCATTATATTTTACATAATGAATCATGCCATAATGGAACTCCCGAGAGGATAACCAAAATTCAATGAGCTTGCCTAGGCTATCCTACAACTACCTCTCATCAATTTGTGGCCAATCTCATGAAACGATATTATCCTTCTCTCATTTTTGGATGGTTTATTTGTCTATTCAGGTCGCAGCAGTTGGAGGGTACGGTGGTCTTGTCGACGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

mRNA sequence

ATGGAATTGTCTTCTAGATGGCTTGAAGTAGATTTCAACTGGCAAGTTGCAACCCACATGCCTTCTGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCTGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTCGCAGCAGTTGGAGGGTACGGTGGTCTTGTCGACGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

Coding sequence (CDS)

ATGGAATTGTCTTCTAGATGGCTTGAAGTAGATTTCAACTGGCAAGTTGCAACCCACATGCCTTCTGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCTGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTCGCAGCAGTTGGAGGGTACGGTGGTCTTGTCGACGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

Protein sequence

MELSSRWLEVDFNWQVATHMPSACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR*
Homology
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BLAST of Chy2G035070 vs. ExPASy Swiss-Prot
Match: Q8L4M1 (THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-32
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 0 

Query: 1   MELSSRWLEVDFNWQVATHMPSACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQI 60
           + +SS  L+   +W V       C  G+++++WNLP+SE +      + +QD++F + QI
Sbjct: 248 LRVSSMALDGSESWLV-------CGQGKNLALWNLPASECVQTIPIPAHVQDVMFDEKQI 307

Query: 61  LGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLC 120
           L VGAEP L RFD+NG++LSQI CAP S FS++LHP+GV AVGGYGG+VDVISQFGSHLC
Sbjct: 308 LTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFGSHLC 362

Query: 121 TF 123
           TF
Sbjct: 368 TF 362

[Close]
BLAST of Chy2G035070 vs. ExPASy Swiss-Prot
Match: Q5XJS5 (THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/112 (28.57%), Postives = 52/112 (46.43%), Query Frame = 0 

Query: 8   LEVDFNWQVATHMPSACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEP 67
           L  D +W +       C  G S+S+W+L S    S        ++ V   + I+ VG  P
Sbjct: 210 LATDSDWML-------CGGGPSLSLWHLRSMSPTSVFPLSGCQREAVSYQDLIMSVGEGP 269

Query: 68  FLTRFDINGSVLSQIQCAPQSAFSVALHPSG----VAAVGGYGGLVDVISQF 116
           +++     G+V +QI C+P S  ++AL+       V  VGG    +DV + F
Sbjct: 270 YVSHCLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNF 314

[Close]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match: A0A0A0LWJ2 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G589670 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 128
           QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match: A0A5A7UQQ6 (THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001940 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.0e-53
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 128
           QCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match: A0A1S3BQ99 (THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.0e-53
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 128
           QCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match: A0A6J1D376 (THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-50
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSS+QDM FCDNQILG+GAEP LTRFD+NGS+LSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSMQDMAFCDNQILGIGAEPSLTRFDVNGSILSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 128
           QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTF CQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFRCQYR 369

[Close]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match: A0A6J1F6F8 (THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.9e-50
Identity = 95/105 (90.48%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS SVWNLP+S+FIS+TLTRSS+QDMVFCDNQILGVGAEP LTRFDI+GS+LS+I
Sbjct: 266 ACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEI 325

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 128
           QCAPQSAFSVA+HPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 326 QCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 370

[Close]
BLAST of Chy2G035070 vs. NCBI nr
Match: XP_004144008.1 (THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007648 [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 1.37e-67
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 127
           QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. NCBI nr
Match: XP_008450878.1 (PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subunit 6 [Cucumis melo var. makuwa] >TYK10060.1 THO complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 3.89e-67
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 127
           QCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. NCBI nr
Match: XP_038880261.1 (THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex subunit 6 isoform X4 [Benincasa hispida])

HSP 1 Score: 216 bits (551), Expect = 5.51e-67
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSS+QDMVFCDNQILGVGAEPFLTRFDINGSVLSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSMQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 127
           QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 369

[Close]
BLAST of Chy2G035070 vs. NCBI nr
Match: XP_022147721.1 (THO complex subunit 6 [Momordica charantia])

HSP 1 Score: 206 bits (524), Expect = 6.42e-63
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS+SVWNLPSSEFISKTLTRSS+QDM FCDNQILG+GAEP LTRFD+NGS+LSQI
Sbjct: 265 ACADGRSLSVWNLPSSEFISKTLTRSSMQDMAFCDNQILGIGAEPSLTRFDVNGSILSQI 324

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 127
           QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTF CQYR
Sbjct: 325 QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFRCQYR 369

[Close]
BLAST of Chy2G035070 vs. NCBI nr
Match: XP_022934010.1 (THO complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 205 bits (522), Expect = 1.32e-62
Identity = 95/105 (90.48%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 23  ACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQI 82
           ACADGRS SVWNLP+S+FIS+TLTRSS+QDMVFCDNQILGVGAEP LTRFDI+GS+LS+I
Sbjct: 266 ACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEI 325

Query: 83  QCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 127
           QCAPQSAFSVA+HPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 326 QCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 370

[Close]
BLAST of Chy2G035070 vs. TAIR 10
Match: AT2G19430.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 )

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 0 

Query: 1   MELSSRWLEVDFNWQVATHMPSACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQI 60
           + +SS  L+   +W V       C  G+++++WNLP+SE +      + +QD++F + QI
Sbjct: 248 LRVSSMALDGSESWLV-------CGQGKNLALWNLPASECVQTIPIPAHVQDVMFDEKQI 307

Query: 61  LGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLC 120
           L VGAEP L RFD+NG++LSQI CAP S FS++LHP+GV AVGGYGG+VDVISQFGSHLC
Sbjct: 308 LTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFGSHLC 362

Query: 121 TF 123
           TF
Sbjct: 368 TF 362

The following BLAST results are available for this feature:
BLAST of Chy2G035070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L4M12.1e-3254.10THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1[more]
Q5XJS51.4e-0428.57THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1[more]
BLAST of Chy2G035070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWJ21.3e-53100.00WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G... [more]
A0A5A7UQQ63.0e-5398.10THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16... [more]
A0A1S3BQ993.0e-5398.10THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1[more]
A0A6J1D3765.2e-5092.38THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1[more]
A0A6J1F6F88.9e-5090.48THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1[more]
BLAST of Chy2G035070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144008.11.37e-67100.00THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007... [more]
XP_008450878.13.89e-6798.10PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subuni... [more]
XP_038880261.15.51e-6798.10THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex... [more]
XP_022147721.16.42e-6392.38THO complex subunit 6 [Momordica charantia][more]
XP_022934010.11.32e-6290.48THO complex subunit 6 [Cucurbita moschata][more]
BLAST of Chy2G035070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19430.11.5e-3354.10DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042626THO complex subunit 6PANTHERPTHR44411THO COMPLEX SUBUNIT 6 HOMOLOGcoord: 22..124
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 22..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G035070.1Chy2G035070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009788 negative regulation of abscisic acid-activated signaling pathway
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0000347 THO complex
molecular_function GO:0005515 protein binding