Chy2G033130 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G033130
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 7165683 .. 7170110 (+)
RNA-Seq Expression	Chy2G033130
Synteny	Chy2G033130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTCCCCATTTTCATACTGGTATTTGAAGTGGGTTTATGGTTTCAGTTGATCTCACGAAGTTGGAATTTTTGAGGATCATTGAGATCACTCGAATTTGGACAAATATGGGTTCTTAGTTTATACTTTATACTATCGGAAAGAAGAAGAAGATTATTGTTCATTTTTTGTTAATCGCAAGTTTTAGTTATTGAACTTTCAAGCTTATGTTTAATAAGTACACATTTTTTTTAAATGCTTCTTACTAAACCCTTCTTTTATTGTTGATTTTTTTAATAAATGTATCCATGGTAATGGTTCGTAAAGTATTTAATTATTTCTTAAATTTTCAATAATGTAACTAATAATAAGTTTTAAAAATCTCAATGTTGTAATTAAAACAAATACGACTCAACCGAAATACAACATGCGTTGGCTCGGTGACAATAAACACTCGTTTATGAGATATGAAATATGACTTTAAAATGGAATATTAGAATTCTAACTTGGTAATTTGTTGGTTGGGTTGTCAACTTGTTGTATCCTTCACTTTAGTATATTTGGTTGTTGTCGTCACTTTCCATTGGTGACGTTATTGCTGTATTCACTTAGATGTCTTAAAGCAACAATTGTTTTTATAACTTAGGTATGAACCATTCTTTTTAGATGTGAGGAATGCATAATCTCGTTTGAACCATTTGTTTTTATACGTGGGGAATGCACAACATTGTTCACCTCAACTAGTGCGTCTTAGCTTTTCAATTTAGATGCGTATAAATTTGTCGTCTTCATTAATATATAGAATCACAACATTGTTGTTGACAAAAATGTTTGAGAAAGGTTTCACAACTTTAAGAGTGCGATGTAGATTTTAAGGAGTGAACAAAAAGAATGTAGATGGACACACAATGAAAGAAAGAGGATAATGTAGTAAAAAATGAAGGAGGCCCAATGTTTGAGCATGTTCGTTTGATTTGTGCATGAATGGAGATAGTTTTTATGATAGAGTTGGTTCGAACATTACATACTACTTTATTTATCTGCTTAATTTTATAATATTTGGATGTTATGTCACCTATGTATTATGTTTCGTTATTTACAACTTTTAGATAAAATTTATGTTATTTATAACCCAAATCTTACCTTATATACTTGCATGAATGTAAAAGCTATTAATATACTTAGTATGCTACTTTACGAGATGAATCAAAACATTGATAGACTTGATTTTGAAGTCTTGCTATACCAATTATACATCTAAAATATATATTTAAACATTCATGAACACATCACTAATATGTTTGAAAAAATGGCAGAATAAAGTCAAAATAATTACAAAAATCTAAACATTACAAATTTGGTATAATTACTCTAGAAGTATGATTTAATATTTATATTTTAATAAAAGCTCACAAACAGAATGAATTTATGAACTTAAAATATCATAAGTAGTTCTTATCTAATTTTTTTTATCTAAATATGAAAACTAAATTCTAAAATTCTAACATGACATATTTTAAATATCTTGCCATATTTACCAAACTAAAGGAGTTATTTTTACATTTGCAAATATGAGTAATATTTAGTCATCCATTGTAAATTCTATAAATTTTAACATAGATTATGTCTAGAAAAAGGAAGGAAAGAAAAAAAAAGTATGATTGTGGGAATAAGAAAGAAAAAGGGAAACACAGTTGTTGATAATTAAATTTGATTTGTAAAAAAAGAAAAAGAAACCACTCCTTGAATTTTTTTTTTAAAAACAAAAAGAAAAGAAAAAGGGAAAAACAGAACCCATTGAAATTCTCAATAATTTAGATCAAAACATTGAAGAAATATATATAATTATCGCGAAAAGAAAAACCGTGTTCTCTTCTCGCCCCCAAAGTCTTTGAACCCTTTTTCGCCAATTGCTACTTCTTCACTCTTCATCTTCTTTCCTTCCACTCACTCTCCAAACATGCCCAAAATATCCGCTTTCAACATTGATTTTGCTTAGTTCGCGCCTATTTTCTCCTTCAATCATATTATAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATGTGAGTTCTATGTTTCCCTCTTCCTTTAATTCTTTTACAGTTTTTGTTGTATGGATGTTTTCGTATATGGGTCTTGATCTTTTGCTCCTTTTGTGTGGGACTGTATGTGGGTCGAGGTTCTTCGGCTTCAAAGTTTGGCCCTTTCCGGTTATTACTCCCCATATCCCCATCGCCAAGAATGACGTTTTTTTCTTCTTTGTTTTTTTTTTCTCGAGTGTATTTTTTTCTTCTGTGCTCGAGATTCTTTGTGCTTATGCGTATCTTTGGGAATAGATGACTTGGAATTGGGATTTTCTTTTGGCCATCTGGTGAAGTATTTCAAATAACAGGTAGTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAACGGAGGTGATCTTTCCGTAGGATTTGGTTATATTTACATAGAGCTCTTGTTCAACTGGATTTTAGGTGAAGTTAAGTTCGTAGATTGACTGAGTAGTTGGTGAATTGAAGATTACCGTCTGGTGTCCAAAAGGAATGCTATACTATAGAGTTAATAAATCTTTTTTTTTTTTTTTAATATTTGATTGTTGAAAGTGGGTTTTCTTTAGAAAGAAAAGTTTCAGAGGACTTCTGATTTTTCCCATGGAATTACTGCACGTGTACTCCCTGATTGCTTTTACACTGTCGTGACACCCAATTCAATTTTCTTAGCTTACAAGTTATATATCTTCTAGCATGGTCTTTGCATTCAATCGATTTTTGGAGGAGTATGGGGTAGGGAGCTCAGGTTACCCCTCTAGATGCGGCCATGACGTTCTATTAGGGGTCTCAAAATAGTGGACATTGCCCCCCATGTTATTGTTGAAGGCAAGTTTTTTGGTTGTTGCTTTAGAAGATGGCGGGGGCACACATGACTTTTTGCTTCGTTTAATCTTTTCTTACAAGTGAAAGTCCTGGTGTCTGGTTGGTAGCTTGTGCAAGCATTTATCCAAATGATTGTAACTGAAAGAAAACTTCTCTAAGTACATCTTGTTGGTGCTTGCCTCATAAAAGAAAAAGGTGAGTTGTGTGCAGATTGGTAGTCTTTGGAGGAATCTTGGTGTTGGCATATATGGAGTAGAATGCTCGTGCCTTGTTTATTTTATAGTTGTCGTTGGAATATGATTTCTAAGTGATGTCATTGGAATATAGAATCTGGAGGATTTTGAAGACTAAGGTTTGAATGTTAAGATTTTATGTAGTAGTTCTAATTATCTGGTTCTGGTAATGGAAAGATCTTGCACAAGTGGTTGGAATTTCAAGGTAGGTATCAACCTATTTGAATCTTGATCACATTCTTTGGAGCCCTAATTTTCTTTGGCTTTTTGAAGTCTATTTTTTTGATGTATTTGACTTTCCATTTGCTAGACAAAGAGGGTATAGGGTGATGATTGAGCAGTTTCTTCTCCATTCGGATTTTTGGGAGAATAGATGGTTCTTGTTCCAAGTGGGGGTTTGTGTTGTGTTCTGAGGCGAGAGGAATAATAAGACCTTTAGAGGGGTTGAGAATGACTGTATCAATGTTTCTTCTCTCACTAGATTCTATATTTTTCTTTGGGTGTTAGTGACAGTGTTTGTTAATTGTTTTTTGGGTCTTATTTGAATTGGTTGGAGGCCTAGTGGGGCTTGGTTTTTTGGATGTTGTTATAGTCTTTCATTTTTTTTTCTTAATGGAAGTTTTTTTCTTTCTGAAAAGGAAACATAACTTTTCGTTGAAAAAATGAAAAGAGACGAATGTCAAAAAATACAATAACTATTAAGAGAAGACAAATAAAATAATACAATAACTATTAAGAGAAGAAAAATAAAATAATACAGTAACTATTAAGAGAAGAAAAATAAAATAATACAATCCTTTTAAGATACAACGAGGATAAGACACCAAAAAGCAAACACTTAAAGCCTAACAAACTAACTCAATGAAAGTTCAATTCCAGTTCATTAAATATTGTGTTTCAGGTCTTAGTAGTTAAAACATTTGTAATTTGACTGATTTTTTGTTTGTAAGTTGTAAGTTAGATTATTATTGTCATTTATATTTCTTATTAAAGCTTTAGGCTGAATCTTAAATAATTTAGTTACTGGATGTATATTTATTAATTTACCCCTTGCTGAAGTCTTAGGTTCTTTTTCCTGCCAAAGTTAATTGATTAGACCCCAACTTATTAGGTTCCTTGATAGATACCCTCTTCTTTAGTTAATGTATCACGTAGAGTGTGCTAATGTCAACATATAATTTTCTGCAGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

mRNA sequence

ATGTTTTTCCCCATTTTCATACTGTTCGCGCCTATTTTCTCCTTCAATCATATTATAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

Coding sequence (CDS)

ATGTTTTTCCCCATTTTCATACTGTTCGCGCCTATTTTCTCCTTCAATCATATTATAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

Protein sequence

MFFPIFILFAPIFSFNHIIGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSWN*

Homology

[Close]

BLAST of Chy2G033130 vs. ExPASy TrEMBL
Match: A0A0A0KKT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MFFPIFILFAPIFSFNHIIGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60
          MFFPIFILFAPIFSFNHI+GLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP
Sbjct: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60

Query: 61 LQEQLGISKNSWN 74
          LQEQLGISKNSWN
Sbjct: 61 LQEQLGISKNSWN 73

[Close]

BLAST of Chy2G033130 vs. NCBI nr
Match: KGN48366.1 (hypothetical protein Csa_003278 [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 8.28e-43
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MFFPIFILFAPIFSFNHIIGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60
          MFFPIFILFAPIFSFNHI+GLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP
Sbjct: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60

Query: 61 LQEQLGISKNSWN 73
          LQEQLGISKNSWN
Sbjct: 61 LQEQLGISKNSWN 73

[Close]

BLAST of Chy2G033130 vs. NCBI nr
Match: KAG7035121.1 (hypothetical protein SDJN02_01916, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 2.99e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 72
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 87

The following BLAST results are available for this feature:

BLAST of Chy2G033130 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G033130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKT8	1.4e-31	98.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1	[more]

BLAST of Chy2G033130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48366.1	8.28e-43	98.63	hypothetical protein Csa_003278 [Cucumis sativus]	[more]
KAG7035121.1	2.99e-16	89.74	hypothetical protein SDJN02_01916, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy2G033130 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G033130.1	Chy2G033130.1	mRNA