Chy2G033000 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G033000
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RING-type E3 ubiquitin transferase
Location	chrH02: 7042236 .. 7043687 (-)
RNA-Seq Expression	Chy2G033000
Synteny	Chy2G033000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCTCTAATTCACGGAGGTTTCTCCTTCCCTCCGCCACGGCGGCCGCCAGTCCTCCGGAGCTAGCGCAGCCCCGTCCTGGGTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGTTCTCTGGGTCTCAACGCCATCCTCAAATGCGCCTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGGGGGCGTGGTGGTGGGGCCTTAGTAGTACACCCCAAAGGTGTTCGACGAAACGTCTTGAAGAAATTCCCAACTGTTGAGTACTCTAAAGAAGGGAATAAATTGAGGGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAGTGGTTGAGTTCCCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCACCGCCGGGTGCGGCCAGGAGACGCAAGTGACAACGGCAGCAGAGACTTCATCCTCTGTAGAACCACCGCGGGCGGAGGAGGTGGGGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGGTATGATAAATAACTATAGGGAAAGTATGAGTAGATGAGATTGAAGTGGGAAGTGGGGTTTAGCTGATCGGGACTGTGGGGTTGGGTTGTTTTTTGTGATTGATGGAGCATTTTGGCTGCTTTTGCTTTTGCCTATAAGTAACCAACCTTTTTTTTTTTTAAAAAAAGATTAATTAGGATTACAAGCAAATTAAAGGTCTAGTTAAGCTAAGATTAATTAGTGTACCTATTCAAATGTAAATATCTTTTCTTTTTCCACTCCCTTCTAATCGAATCAAAAGTTTTTGGCTCATTATAATTATATTTACACTTTTTTATTGTTTGAGCTTGTTTAGCGTAACTCAACTAACCTCGTAGTATTTGAATATAAAAAACTAATAAAAAATTATTTTTTAGTAGACGACATTGTGAATTGAACGCTTAACCTTTTACCAATTTATTAAAAATTTGGTTAATTTTAAGGTTTAGAATGTTTTAAACTTTTAGATTTATTATGTTATGTTATATATTGTCTCAAAAATTTCAAATTCTTATAGACGATAGGGTGGTGATACAAAATTTGATTGAAAGAAAAAATTAACGTCAATTCTTTAGCTTTTTACCTATATAAATTTTATGGCAAAATAAATTAAAAAGATCAAAACCACCCAAAGTCGTAGGCATGGTTTTGTAAAAATTAGAGACTAAATAGAATGAATTATAAAGAGTTTAAAATTGGAAATGTCATTTTAAATTTCAACCAAGTAAACAACAATGATTCAATTACATTATGAATGTTGAATGTAGTGGTGATGGATGAGGTAGATATCAGATGTTTAATGAGGGAAGGTTAA

mRNA sequence

ATGTCTATCTCTAATTCACGGAGGTTTCTCCTTCCCTCCGCCACGGCGGCCGCCAGTCCTCCGGAGCTAGCGCAGCCCCGTCCTGGGTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGTTCTCTGGGTCTCAACGCCATCCTCAAATGCGCCTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGGGGGCGTGGTGGTGGGGCCTTAGTAGTACACCCCAAAGGTGTTCGACGAAACGTCTTGAAGAAATTCCCAACTGTTGAGTACTCTAAAGAAGGGAATAAATTGAGGGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAGTGGTTGAGTTCCCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCACCGCCGGGTGCGGCCAGGAGACGCAAGTGACAACGGCAGCAGAGACTTCATCCTCTGTAGAACCACCGCGGGCGGAGGAGGTGGGGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGTGGTGATGGATGAGGTAGATATCAGATGTTTAATGAGGGAAGGTTAA

Coding sequence (CDS)

ATGTCTATCTCTAATTCACGGAGGTTTCTCCTTCCCTCCGCCACGGCGGCCGCCAGTCCTCCGGAGCTAGCGCAGCCCCGTCCTGGGTTCGGTAGCTTCGACATGAACGTAGTAATGGTTCTTTCAGTTTTACTCTGCGCTTTAATTTGTTCTCTGGGTCTCAACGCCATCCTCAAATGCGCCTTGAGGTGCTCCACTTTGCTAGCCACGGTGTCAGGGGGGCGTGGTGGTGGGGCCTTAGTAGTACACCCCAAAGGTGTTCGACGAAACGTCTTGAAGAAATTCCCAACTGTTGAGTACTCTAAAGAAGGGAATAAATTGAGGGGAATTGATGGGGAGTGCGTGATTTGTTTGTTGGAGTTTGAAGCAGGGGATCGGGTTCGTGTATTGCCCAAGTGTTATCATGGATTCCATGTTCATTGCATCGATAAGTGGTTGAGTTCCCATACTTCTTGCCCCAAGTGCCGCAATTGCCTTACTGACACTTGCCATAAGATCACCGCCGGGTGCGGCCAGGAGACGCAAGTGACAACGGCAGCAGAGACTTCATCCTCTGTAGAACCACCGCGGGCGGAGGAGGTGGGGGTGAATGTTGTTATTGCTCCGGTGGAAAGGGAAGTGGTGATGGATGAGGTAGATATCAGATGTTTAATGAGGGAAGGTTAA

Protein sequence

MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSSSVEPPRAEEVGVNVVIAPVEREVVMDEVDIRCLMREG*

Homology

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BLAST of Chy2G033000 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-44
Identity = 104/203 (51.23%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 4   SNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALR 63
           S SR+ L    T   SP     P  G  +FD NVVMVLSVLLCAL+CSLGLN+I++CALR
Sbjct: 25  SYSRKLLF--HTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 84

Query: 64  CSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEA 123
           CS L+ + +GG      + +  GV+R  LK F TV YS E N L G+D EC ICL EF A
Sbjct: 85  CSNLVPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVA 144

Query: 124 GDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAAETS 183
            +RV++LP C+HGFHV CIDKWLSSH+SCP CR+CL  TC KI A C Q + +       
Sbjct: 145 EERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQTSSL------- 204

Query: 184 SSVEPPRAEEVGVNVVIAPVERE 207
           +S +PP   +  + + IAP+E E
Sbjct: 205 NSTQPP---QDSIILQIAPLEPE 212

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BLAST of Chy2G033000 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.7e-35
Identity = 85/179 (47.49%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LS+L+C +IC LGL+ I++CALR ST       + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+D ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 156 TSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSS----SVEPPRAEEVGVNVVIAPVE 205
            +CPKCRNCL +TC KI     Q   VT  AE +     ++ P    E+ V V IAP+E
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVT--AEPTEIVIVTIVPLEPTEI-VIVTIAPLE 226

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BLAST of Chy2G033000 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-33
Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 28  PGFGSFDMNVVMVLSVLLCALICSLGLNAILKCA------LRCSTLLATVSGGRGGGALV 87
           P   +   NV+M+LS+LLC +ICSLGL+ I++CA         S  ++  S  R      
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 88  VHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHC 147
              KG+++  LK  P V YS E N L G+  ECVICL +F AG+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 148 IDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSSSVEPPRAEEVGVNVVIA 207
           IDKWL+ H +CPKCR+CL DTC K+ + C    QV   A  S            +++ I+
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATES------------IDIRIS 210

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BLAST of Chy2G033000 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-32
Identity = 78/171 (45.61%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALR------CSTLLATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+  ECVICL +F +G+++R+LPKC+HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 156 TSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSSSVE-PPRAEEVGVNVV 200
            +CPKCR+CL +TC KI     Q  QV      S  V   P   E  VN++
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAATPTASVIVRIAPLEPEGRVNIL 222

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BLAST of Chy2G033000 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.8e-32
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R S+       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS+E N L GI  ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 156 TSCPKCRNCLTDTCHKITAGCGQ-ETQVTTAAET 183
            +CPKCR+CL +TC KI     Q ++  +T  E+
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQADSMASTPTES 204

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BLAST of Chy2G033000 vs. ExPASy TrEMBL
Match: A0A0A0KF92 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.3e-109
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFL+PSAT AA+PPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGC QET VTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 ETSSSVEPPRAEEVGVNVVIAPVERE 207
           E+SSSVEPPRAEEVGVNVVIAPVERE
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVERE 206

[Close]

BLAST of Chy2G033000 vs. ExPASy TrEMBL
Match: A0A5A7SLG8 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00380 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 201/209 (96.17%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVT--- 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGCGQET VT   
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 TAAETSSSVEPPRAEEVGVNVVIAPVERE 207
           TAAE+SSSVEPPRAEEV VNVVIAPVERE
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVERE 209

[Close]

BLAST of Chy2G033000 vs. ExPASy TrEMBL
Match: A0A1S3B203 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 201/209 (96.17%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVT--- 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGCGQET VT   
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 TAAETSSSVEPPRAEEVGVNVVIAPVERE 207
           TAAE+SSSVEPPRAEEV VNVVIAPVERE
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVERE 209

[Close]

BLAST of Chy2G033000 vs. ExPASy TrEMBL
Match: Q8W550 (RING-type E3 ubiquitin transferase (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 9   FLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 68
           FLLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL
Sbjct: 1   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 60

Query: 69  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 128
           ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR
Sbjct: 61  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 120

Query: 129 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTT 179
           VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGCGQET VTT
Sbjct: 121 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 170

[Close]

BLAST of Chy2G033000 vs. ExPASy TrEMBL
Match: A0A6J1GCL7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.8e-85
Identity = 164/206 (79.61%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSI+NSRR LLP+ T  ASPP  AQPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNA+LKC
Sbjct: 1   MSITNSRRLLLPAVT--ASPPVSAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNALLKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCS+LLAT+SGGRGGG   VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FE GDRVRVLP C+HGFHVHCIDKWLSSH SCPKCRNCLTDTCHKI +G  QE       
Sbjct: 121 FEGGDRVRVLPICFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAPDGEFI 180

Query: 181 ETSSSVEPPRAEEVGVNVVIAPVERE 207
                  PP  EEV VNVVIAPVERE
Sbjct: 181 AIDPPPPPPPGEEVVVNVVIAPVERE 204

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BLAST of Chy2G033000 vs. NCBI nr
Match: XP_004148642.1 (RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein Csa_003943 [Cucumis sativus])

HSP 1 Score: 403 bits (1036), Expect = 3.63e-141
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFL+PSAT AA+PPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGC QET VTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 ETSSSVEPPRAEEVGVNVVIAPVERE 206
           E+SSSVEPPRAEEVGVNVVIAPVERE
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVERE 206

[Close]

BLAST of Chy2G033000 vs. NCBI nr
Match: XP_008441014.1 (PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa] >TYK25707.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa])

HSP 1 Score: 396 bits (1018), Expect = 2.24e-138
Identity = 201/209 (96.17%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRRFLLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGCGQET VTTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 ---ETSSSVEPPRAEEVGVNVVIAPVERE 206
              E+SSSVEPPRAEEV VNVVIAPVERE
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVERE 209

[Close]

BLAST of Chy2G033000 vs. NCBI nr
Match: XP_038882744.1 (RING-H2 finger protein ATL78 [Benincasa hispida])

HSP 1 Score: 391 bits (1005), Expect = 2.07e-136
Identity = 197/208 (94.71%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSISNSRR LLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC
Sbjct: 1   MSISNSRRLLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCSTLLATVSGGRGGGALVVHPKGVRRN+LKKFPTVEYSKEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNILKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTC KITAGCGQE  +TTAA
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCPKITAGCGQEAPITTAA 180

Query: 181 --ETSSSVEPPRAEEVGVNVVIAPVERE 206
             E+SSSV+PP AEEVGVNVVIAPVERE
Sbjct: 181 LAESSSSVDPPAAEEVGVNVVIAPVERE 208

[Close]

BLAST of Chy2G033000 vs. NCBI nr
Match: AAL33552.1 (RING-H2 zinc finger protein, partial [Cucumis melo])

HSP 1 Score: 344 bits (883), Expect = 1.38e-118
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 9   FLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 68
           FLLPS TAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL
Sbjct: 1   FLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLL 60

Query: 69  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 128
           ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR
Sbjct: 61  ATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVR 120

Query: 129 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTT 178
           VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKI AGCGQET VTT
Sbjct: 121 VLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTT 170

[Close]

BLAST of Chy2G033000 vs. NCBI nr
Match: KAG6604272.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333 bits (855), Expect = 8.06e-113
Identity = 169/206 (82.04%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1   MSISNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60
           MSI+NSRR LLP+ TA  SPP LAQPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSITNSRRLLLPAVTA--SPPVLAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60

Query: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120
           ALRCS+LLAT+SGGRGGG   VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICLLE
Sbjct: 61  ALRCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAA 180
           FE GDRVRVLPKCYHGFHVHCIDKWLSSH SCPKCRNCLTDTCHKI +G  QE       
Sbjct: 121 FEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAPDGEFI 180

Query: 181 ETSSSVEPPRAEEVGVNVVIAPVERE 206
                  PP  EEV VNVVIAPVERE
Sbjct: 181 AIDPPPPPPPGEEVVVNVVIAPVERE 204

[Close]

BLAST of Chy2G033000 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45
Identity = 104/203 (51.23%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 4   SNSRRFLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALR 63
           S SR+ L    T   SP     P  G  +FD NVVMVLSVLLCAL+CSLGLN+I++CALR
Sbjct: 25  SYSRKLLF--HTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 84

Query: 64  CSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEA 123
           CS L+ + +GG      + +  GV+R  LK F TV YS E N L G+D EC ICL EF A
Sbjct: 85  CSNLVPSEAGGDNYPVRLTN-TGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVA 144

Query: 124 GDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAAETS 183
            +RV++LP C+HGFHV CIDKWLSSH+SCP CR+CL  TC KI A C Q + +       
Sbjct: 145 EERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQTSSL------- 204

Query: 184 SSVEPPRAEEVGVNVVIAPVERE 207
           +S +PP   +  + + IAP+E E
Sbjct: 205 NSTQPP---QDSIILQIAPLEPE 212

[Close]

BLAST of Chy2G033000 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 85/179 (47.49%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LS+L+C +IC LGL+ I++CALR ST       + ++S  RG        KG+++
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+D ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 176

Query: 156 TSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSS----SVEPPRAEEVGVNVVIAPVE 205
            +CPKCRNCL +TC KI     Q   VT  AE +     ++ P    E+ V V IAP+E
Sbjct: 177 LTCPKCRNCLVETCQKILGDFSQADSVT--AEPTEIVIVTIVPLEPTEI-VIVTIAPLE 226

[Close]

BLAST of Chy2G033000 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34
Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 28  PGFGSFDMNVVMVLSVLLCALICSLGLNAILKCA------LRCSTLLATVSGGRGGGALV 87
           P   +   NV+M+LS+LLC +ICSLGL+ I++CA         S  ++  S  R      
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 88  VHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHC 147
              KG+++  LK  P V YS E N L G+  ECVICL +F AG+++RVLPKC HGFH+ C
Sbjct: 103 --NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRC 162

Query: 148 IDKWLSSHTSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSSSVEPPRAEEVGVNVVIA 207
           IDKWL+ H +CPKCR+CL DTC K+ + C    QV   A  S            +++ I+
Sbjct: 163 IDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATES------------IDIRIS 210

[Close]

BLAST of Chy2G033000 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-33
Identity = 78/171 (45.61%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALR------CSTLLATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R       S  +A +S   G        KG+ +
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSS-----NKGINK 117

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS E N L G+  ECVICL +F +G+++R+LPKC+HGFHV CIDKWL  H
Sbjct: 118 KALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH 177

Query: 156 TSCPKCRNCLTDTCHKITAGCGQETQVTTAAETSSSVE-PPRAEEVGVNVV 200
            +CPKCR+CL +TC KI     Q  QV      S  V   P   E  VN++
Sbjct: 178 LTCPKCRHCLVETCQKILGDFSQADQVAATPTASVIVRIAPLEPEGRVNIL 222

[Close]

BLAST of Chy2G033000 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-33
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 36  NVVMVLSVLLCALICSLGLNAILKCALRCSTL------LATVSGGRGGGALVVHPKGVRR 95
           NV+M+LSVL+C +IC LGL+ I++CA R S+       ++++S  R         KG+++
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSS-----NKGIKK 116

Query: 96  NVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSH 155
             L+ FP V YS+E N L GI  ECVICL +F +G+++R+LPKC HGFHV CIDKWL  H
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHH 176

Query: 156 TSCPKCRNCLTDTCHKITAGCGQ-ETQVTTAAET 183
            +CPKCR+CL +TC KI     Q ++  +T  E+
Sbjct: 177 LTCPKCRHCLVETCQKILGDFSQADSMASTPTES 204

The following BLAST results are available for this feature:

BLAST of Chy2G033000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	4.2e-44	51.23	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	4.7e-35	47.49	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9LS99	2.6e-33	42.70	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q94BY6	2.8e-32	45.61	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q6NML0	4.8e-32	46.75	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of Chy2G033000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF92	2.3e-109	97.09	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE...	[more]
A0A5A7SLG8	2.8e-107	96.17	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B203	2.8e-107	96.17	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 ...	[more]
Q8W550	1.3e-91	98.24	RING-type E3 ubiquitin transferase (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
A0A6J1GCL7	1.8e-85	79.61	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965...	[more]

BLAST of Chy2G033000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148642.1	3.63e-141	97.09	RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein ...	[more]
XP_008441014.1	2.24e-138	96.17	PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 fin...	[more]
XP_038882744.1	2.07e-136	94.71	RING-H2 finger protein ATL78 [Benincasa hispida]	[more]
AAL33552.1	1.38e-118	98.24	RING-H2 zinc finger protein, partial [Cucumis melo]	[more]
KAG6604272.1	8.06e-113	82.04	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Chy2G033000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	3.0e-45	51.23	RING/U-box superfamily protein	[more]
AT1G49220.1	3.3e-36	47.49	RING/U-box superfamily protein	[more]
AT3G18773.1	1.8e-34	42.70	RING/U-box superfamily protein	[more]
AT1G49200.1	2.0e-33	45.61	RING/U-box superfamily protein	[more]
AT1G49210.1	3.4e-33	46.75	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..155 e-value: 4.1E-6 score: 36.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 113..156 e-value: 1.4E-13 score: 51.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..156 score: 11.913911
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..161 e-value: 3.5E-21 score: 76.7
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 5..211
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 113..156 e-value: 1.10537E-15 score: 66.5565
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..160
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 5..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G033000.1	Chy2G033000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity