Chy2G032820 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G032820
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA-binding protein 39-like
Location	chrH02: 6848660 .. 6859330 (+)
RNA-Seq Expression	Chy2G032820
Synteny	Chy2G032820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCGACGAGTACGATTACTTGGAGAAAGCCGTGGAGGACCAAGATGATAGGGAGACGAAGAAACCAAAGAGGAGCGAGAGTGAGAGGAACGAGAAAAGCACCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCCGGTGGTCGCGAGGACGAGGAGGTGAAGGTCAAGCGGTCAAGAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGGCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAGGAAACAGACGGGGGAAAAGAGAGGGATAAAGAAAGGAATCGTACGAGAGAGAGGGGTAGCAGTGAGAAGGAAAGGGAGAGAGACAGGGACAGAGAGGAGAGAGATAGAGAGAGACATAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAAGGATAAGGAAAGAGATAGGGAGAGGCATAAGGAGAAGGACAGGGAGAGGGACAAGGATAGGAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAGGAGAAAGAAAGAGAGAGGAGAGACAGGGAGAGGAGGGAGCGGGAGAGGGAAGAGGAGAGATCGAGGCGAAGCCGAAGCCGGTCCGTTCGGGAGCGAGAACGTGAAGTTGATGTCAGAGAAAGCAGGTAACTGTTCATTTATGTGCCTTACGTTGAACCGGGATCTTGAAAGCTTACAGTTGACTGTTGGCTGTTGCTTCTATACGTTTATTGTCCGCCTGTTTCTTATTATTCTTGAAAATTATAGGGCAGTGTGTTTGATCAAGAAACAAACTTCTCATGGAAAATGTTCAAGGATAGAGACTCCCCAGTGGATTAAAAATAACCACTCAAGCAATAAAATAAAGAAAAGATCCCAGACATTTCAAGAGCCAAAAGATAAATAAAACATTTGAGAACATGAGGGAAAATACTTAACCATGAGAGAACAACATGAGAGGTGAGCGAGGAAAAGCAACAGAAACAGCTTCCACCAAGCACCAAACGCTGCCATGCTACAGGCTAAATGGAGATTAACTGGATAACTGCCCAAAACTGGATAGGAAAATTCCCTCGTGAAATAAGCCATTAACTTTCCAACCAAAATCACTCATGCACACCAAATGAGCCACACACTAATGCTTCAACAAAGCACAGAACCATAAATAAGTTAATCTGGAAAAGCCACACTTGGTTGCTAATCCTTTGCTTTGAACTTCTAAGTCCTAAACCTCTTGGAATCCATAAGGTGTTCTTCATAACGTTACACACCAGCCCACCTCAACAGTTGAGATGAAGAGTTCGAGGCATAATAAATTTTTTTATGCCTATACAAAAATTGTTTACCAACATTGTTCTTAAATTTGAATTCATTGTATGGAATTTGTCTCATAAATAAATTGTTGTATTAAACAATGTGGCTTTGATTAGAATCCATTTATGCTTTGGATAGAGAAGCTTGTAAATATTAGAACTAGGCTATTGGGTTGGCATTATTGATAAACCAGATATTCCATGGAAATTAGACCTCGTTCAAAACCGGTAACGGCAGTAGATTTTATTTTATTCTATTTTTACTTGTTTGAATGGAATAAACACCAGTGTTTCATTGACAAGTGCAAAGGCTTTCTCGACAGTTACCAAATTGGTATTTTGCAGCAAATAGATTAAGAAGTTGATAAACAACCAATGATAACCAACATCATGGTGTGGAAATCCTAGAAACCCATAATTTATTTATTTTTAATTTGCTCAGGATTTTCAATAATTAAGGCACCAAAATGGAATCATAAAAGTTTGGACATGTTCTCTAAGTTGTTTTTATATGTTTACTATTCATGCTCTCTTCTTAGTACAGTGCATCGGTTAAATTGCTGATATACTGCGCTGAAGGTCTTGGTGATAAAATGTTTTAATTTTATTCAATAACTATCCCCTTGTAATATAGAGTGGAAAGAAGAAACTGAGTCATTCTAAATCTTTTAAATATTTGTTTTTAATTTAAATAACTGTATTTTCCTTCAATTTTACCTGATATTTTGGGTGTGTGAATGGCAGGAGAATGAAGGAAAAGAAAGACACGACAGAGCCTGAAGCGGATCCAGAGAGAGATCAAAGAACTGTATTTGCTTATCAGGTTAGTGGCTTCCCTTATTTTCCTTACATTTCACGTTCGGTTTATATTTTGCTTATCATTTTTGTTATCCTACTATTCTTTGTACAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGGTATTTGAAACTTATTACTCAAGCGAAACATTTGTGTATTTATTTTTTCTTTTGCTATAATTGAACAACTAAAGGTGTTAGCAGTCATACAGTCATCTATATTATTTTACGTGTCATATGCATGCCCCTTGGGCCTTGTACTTGTTCACCTCTGTGGCATGTATTCTATGTGTTGTGCATTTTTGTTGCAATGTTACTGCTAGAAATGTTATGATTGCATAGATATTGAGATAGATTTGCTTCATATTGCAGTTACTGTTCCTCTGCCTTCAGTTTCGAAACTATAATCAATTTCTTCTATCTCAACATTCTATTTATATGGGGTGAGTGAAAATGTATGAGTTCTGTCGTCATCTCACTGATGGCTGAATGGCTCTTTGCCTTGAGTGTAAAGAATAGAAACCTTCATTGCTTCTTCATGGCTGGCTTCCTAAAACAACCTGTTTTCATTGTTCTTTCTATTTTCAGGTGAGAGATGTCCGGCTGATCATGGACAGAAATTCTAGGCGGTCAAAAGGAGTTGGGTATGTGGTCTTGAGCGAACAATTTTTGTATTGTATGTTTGTGATCTTGTTAATATGGTTATTAACATAGTAGTTTTCAAGTATCAAATTTAACTGTATTTTTAAATGAACTAGCAATGCGATAATGATGAGGGATGGTGGGAATACAATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTTTCCTTTGTTGTTTTCCCCATCGTACTCCTAATTTTGCTCCTCTATGTTTTTGTGCAGATAAGAAACAGTCCTAACTCCTATGACTCTGTTATCTCTGGTCTTGGTTTTAGAATCATTTCTTTCTATTGTGAAATTTTCTTGGTTCGAATTAACTTTTAAAGATTGTTTTATTACACTGTATTAAAATGAACATGCTTGGCTGGGTATCATCTACTTTCATTGTTTCTTTTTCCTGAAAAGTTGAAGAAATTGAGAAAGTTTGTTTTCTGTGGCATCTTGACTTCCCCATTGTGCTTACTGTGGACTAATATATATATATATTAAAATTATTACTATAAAACACTGTCCAATTTCTAAACATGGAAATATGCTCATTGAAAAAATTAGAAAGGGTGATGAATAGTTACCCTACTTCTCGTCTAAGCTGGTCATCTGGTATTTGGTTATGTGTTGCTTCTTCATTTGATGAACTGATCTGACCATTAAATCAGTCGGAAGAAACTAAGAGGTCTCCGCGTATTTATTTATGCTTTGTCAATTTTGCTGCTTATTTTTGCGTCTCATTTTCTAATAAGTTTACTTTGAGGCATTGATTAAACTGCAGGTATGTTGAATTTTATGATGCGATGTCTGTGCCTATGGCTATTGCTCTCTCTGGTCAACTACTTCTTGGGCAACCTGTAATGGTTAAACCTTCGGAGGCTGAGAAGAATCTTGTTCAATCAAATACAACCGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGAAATCTACACTTTAATATGACAGAGACTCACCTTCGAGAGGTACTAAGATCAATTAATCTGTGGAATTTTGTTTCAAGACATTCATATTTGATTTCATCTCATATGCTGTTATTTTCTATACAGTGACAACTATAGGGTTCCATGAATAATAGGCCTAACGAGGATTTAGAATTATTTCCTATGGCTCTTAAGTAACTGTAGCATTGTAACCTTTTGGCTACGGTAGTTATTCCCTTTCGTTCAGATAGGTTTCACAGGAAATGACAGCCAAACTTGCCAAGGACTAACTTGTGAGGGCCATCCATCTCTCCGTAGAATCTGTTAATTACACAGAAAATGCACCTGTATCCTAGTTTTCAGAAAACACAGCATTCACTACATGTAAAAAAGATTCAGAACCAACTTAACTTCCCTATTTAAAATGTTCAAACAAGGAAATTAACTTCCCTATTCAAAATATTCAAACAAGGAAACCTAAGACTGACTTCTAAATATAGAAACAGGAAACAGCTACATTTCCATGTTTTCATTCATCGAATAAATCTTCTGGATTGGAAGTCTAACAGATCATCACTTCTTTTCTGATTAGATTTTTGAAGCATTTGGTCCTGTGGAGCTTGTGCAGTTACCTCTTGACCTTGAGTCCGGTCACTGTAAGGGTTTTGGATTTGTTCAAGTGGGTAATCATTTATTATCAACTTTTGCAAGTTTTTGATGATGTATCGTAGTCCATAGATTCATAAGGCTCTGTCTTAATTTTTTGAATTCTTTCTAGTTTGCCCATCTAGAGCATGCAAAGGCTGCACAAAGCTTGAATGGGAAATTAGAAATTGCTGGCCGAACCATCAAGGTAGTGTTCTACTAGAACCTTTCAGATTTAACTTGTGTTCAGGACTGATATTTTTGTTTGTTATTAGTGCCTCTAAGGAATGATGGTGTCCTTGGTTTTGTGTGTTCTAAATAATGCTCTGTTTGTGCAGGTTTCATCTGTAACTGATCACATTGGAGCACAAGAGAGCGTTGCAAAATCAAACGACCTTGATGATGATGAAGGAGGCGGTCTGGTTGGTGTATAGTTTTCTTTTATGATTAAATAAATGTCTTTTTACAATTCTTTTAGCATGTTTTCTTTTTAGCACAAGAATTTGGTTTTTACTATAGTTGATGTTTGAAATTATTTAATGTGGCTGTCTCATAAGTGATCATCTTGTGTTTAAAGTATATTGTCCTTGTAATAATGATATAAAATTTGAAGACATATTTTTGCTTTCAATTATGTTATGGGTGAGACTAGGTGAATTTCCTTTGTGTGAGCACCTACCATGAGTGTGTGCTTATAGCAACATTGCAATGGCCTGTCATCGAATTAAATAATTGCAATGACTTTCCTCTCCATCTTCCTATCATAATATAATTGCGCTTGGTGGTGTTAGGTAATTCTTGTTTTATAGAGGAGAAAAGAAGAAATGAAAAATGAGACTATTGACATCAGATTATGATCATGTGTCATAATTTATTTGATGACTGTTGAACTGTGTGGCTGAATTTTTTCTCTTTATTCTCTTCCAACTATAAAGTGCTTTATGGTTACTCCTTGGCGGTATCATTTGTACATTGCATTACATTCATTAACATATTAATTTTCTGAAAAAATTGCTTGCTAATTGAAATGTCTAATTGCAGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATCGCTACTAGGTTTGTCTCCCTTTTGGCATAATTAAGTAGCAGGATGTCCTAACTTTCCTCTGTAGTCGTTAGTGTGCTTATATCTTCTTTGGATGTATTTGTATTCTGCAAGAAAGAAATATTGGATCAATGGAAGTTAACTTCTTCATGGTTATTGCTTCATGGTTTCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTACGAGCTTGCCTGTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCGGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGCAGTCCTAGTGAATGTTTACTATTGAAAAACATGTTTGATCCTTCGACGGAGGTACTGAGTACTTGTATTTTCTGTTTTCATCTTTCGAGCTGGATTATTTATTAGATGAATCATCTTGCAGACAGCACCAGATTTTGACATGGAGATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATACGGCCACGTTAAACATATATATGTGGATAAGTGAGTATTTTTCTTGTCCCCACAATCATATTATATCTGGTCATATTATTGGAGAGGAGTGTTCTAAATACGGTCGCGTTAAACATATATATGTGGATTACTGAGTATTTTTCTGTCTCCGTAATCATATTAACCATTTCTGGTCATATTATCAAGTGAAACTTTATTTTTTTTTGGTTCAAACTTATATTTCTGCTTTCTTTTTAAGTTACTCATATATTTCTACAACACTTAAAACAGGATGTCTCCTGTTCACATCTTTCTTGAATTTGTTCTGTTACGTGTTGGGGATTGACTTGGATCTTTGATCCTCATTTGCAGATACTTCCGGAATAGGGATGGAAAAAAATTACTAATGCCTTCATGGATGGGAGAATCTTATTTTCTCTATTTAATTTTAGGCTGGTTATGGAAAGGGCTATCTTATGCTGACATTAGCCTTTGTCATGCATTATCACAAATTTATAACTATACTTGACTGACAACATTTTCCATTTAGTTTATACACAGCCAGATTAGTTATTTAACTAGAACTAGTTGTAGTAATGATCGAACATTTAGATGGTACTTGCAAAATTATTTGGACTTTTACATGGTTAGCTAATGATGGTTCGGGAAACATACTTGAATTTGCTTGACTTTCTCACTGCAGCCTCACTGTCAATATATCTAGAAGTTAAAAGTTTAGGAAGTTAAATAATATGCAGTTATTGCTTCCATAAAATGAATGCAATTATTGTTAGGCTCATCATTTTATGTTGATGGTACTTGAATTAACGGAGAAGAGAGAGGGCAGGTAAAGGTAGGGGGGATAGTCTAGGGAATTGCTCTTACACCAAACACTTCATGCATTTGCTAACGTATTAAGACTCCATTTGATAACTGCTGCGTTAAAAGTTTTAAGTTTTTGAAATCTACCTTCATCTTTATATTTCTATATTATGTTCACTTTCTACTAATGTTTTCGAAAACTAAATGGGCAGCTTTTTAAATATAGTTTTTACTTTTAGATTTTAACTGAGAATTCAAATTTTCTTTCTCACAGTGTAATTAAATTGGGAGAAAACGAATGAAAATTTGAAAAACTAACACAAAATAATAACCTGATCACTTATGTCCCATCTTTTTTGCGTTTCTTCTGAAACCTCTGTACCATAAGTGATGCTCTCTCCACCTTTATATCAGAGAACAAATCTTTCGATTATGTGATCAAATAGATATTTGTTCTATCTTTTCATCGTCTTTCTTTTTCTTTTATTATTTTTCAATGTGCAGAAATAGCGCGGGATGTGTGTATCTGCAGTATGATACTGTGGAAGCGGCCATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCAGGCAGACAGATATCAGTCTTGTTCATGGTTAGTTATTAACAAGAAATTGTGCTCTCTTGATTTATTTCTTTTGAAACTCGTTTCCTTTCGTTGGTTCTCAGTTTCTGCTTCTCAATATCATCTTGTTCTGTCTTGCAGCAACCGCAGGTGTATGAAGCTAAGTTTATAGGAGCTTGAATGCCGTCCGTGGTTCTTATCACTTACGAGTAATCAGGAGATTCCTCTAGCCAATCCATGCTCTATATTTTCTCGGGTGACCTCCCATCCTGTCCCGTTCGGTCAATGTCTAATGTCTTCTCCTTTCTGTAATAGGTGGTTATAGAAGTACTGGTTAAAATTGCGTCAATTGTCTTAATAGAAAAGTAAAACGTTGGGTTCTTTTCGTATGGGGGTGGATATTGGTACCTATTCTTAATTTCCTGCTTTGTAACACCCAGTGTCAAGCGAATACCTTTTGTTGGCTTGGATGCATTTAGTGTTTGACTTCTTATGAACATTCCTCTTGTAATGCATTTTGTATAAGTTTTCCAGAAATTAGTAAACATTTCTTTGGAGTTGGGTTTTCTTGCATCTACAAGACTCATTTCTTCCAGCAAATCATTCTGAAGCATTTAATTTATGCAATATTTTTCCATGTTTGTAATAGGTACATATATCGTATATGTATCCAATCAATCGAAGTCTCGATTTTAAACATTAAACTGTGCTTTATTTAGATAAAAGAAAATTCAAAATTTTAAAGAGTTTGAGTGATTGGACTTAAGGTGGATTTGCTTCTGTTTATTGAGAGGTCATAATCTTTTTCAAATAAATTTAATGTGAACGTTAAGTTTGAGATGGTAGAGTCATTGTCTTCAACAAATTAAAATTGGAATGTCGTTTGCAAAGAGGATGTGGTTAATGCTGCAAGTGTCATTGAACGCAACGCCTTTAATAGACTTGGTGGTTTTTAGATGATTCAGAATTGCATTGAGATAGTCCATAGCCAGAACAAATATGAATGCGATAAAGGGTATCCTTGTCGTAGTCCACTTTTTGGAGTGATTCGGCCCTTCAGTTGACCATTTATAATAATTGAGTAATGAACACTAGTGATGCAAGTTTGATCCACTTTCGCCATCGAAATGGGAAGTTCTTCTTTATCATCATAAAATCAATGAATTTCCAATTGATAGTGTCAAAGCCCTTTTCCATATCAATCTTAATCACATAGCCTTTTGTTTTGCTTGTTTTCCAGAAATCCACTGCTTCATTTGTTAAAATTGCATCTGTAATTTGCCTATTTTTTACAAAAGCAAATTGGTTGTCCGCAATAATACTTAACAAAGTCTGCTTTAGTTTGTTAGCTAAGGTCTTAGCAACCACTTTGTAGAGTCAAAAAGTTTCTAATATCATCTTAAATCAACAATTAATCTATAAAAAAAAAAAAACTTTAAGGTGATAGGTGAAGACAAATTTAATATTATATCACCCAACTATATTTTATCTAGTTTTTTTATGACGCGATGATGATACCTAAACCTACCTATGACTTGTAATACTAAAACATCGAGTCTCTTGGGGACCCATACAACCATGGACATAAAATGAAAGGTATGAAAAAGTTTGCAAACAAGTAGTACTATTAAAATTTACTAAATTTTATGGGACTAAAAATTTAATATAGCTTAAGTTGAGTTAAATTAAATTAAGGTGAAATTGAAAGTATAGCCCTTAATGCTATACTTAAAAGTACGCTATTTAATATAATATTCGATCTAACACGAATGTAAATTGAGGTATGTTAAAATAGATTTTACTACTCTATAAAGACTTTATATACGTAACTATATGTTCATTTTATAAATATGTGTATGAAATAATAGTATAGAAATATGACAAGGGATGCATATCACTTCAATGCCTACTTCTAAACCATTTTTACGACTGTGGAACTTGTGTATTTATTAACATCATATTTTTATTTTTATTTTAATGCGTATCATATAGTCCATTGATCACTTCGAAGTTTTTTTAGCATTTATTTCATAAACTCTGGTTTGTAATTTGTAAACAAAGTATTTGTTTACATGAATAATGATAATTACTTATTTCACATTTAGATTGGCTTAACTCAAATCTACCCTAATCTAATCAACTAAGAACCAATTTGGGTTGTTTAAGTAATTATTTTTAACAATATTTTTTAATCTTAATTTCAGTTTATTATTTATTATTAATGTTTTGCCTCTGTGTCTATTTTAATTTTGTTTGATTATTACATTATTTTTAGCATTATTTAATTTTTGTCTTAAATTAATAAATTTTATTGAAAATTTTACCATGTTTCTAATTTACATTGTTGTGTTTGGTAAGTACTGTAAAGTTACATTATTGTTGCTTATCATTCACAATCAATCAAGGCTACACATTTCTTGATCATAATTAATTAAGCTTAATTAAGCTTGGTGTCAGAGTTTGATAACCCTGCAATAATCTTGTATGAAGAACCCATCAAGGAATTTTAAGCATATTTTTTTTTGATAAATGATAACGCAACATAATCCATTACGAATAACTTTTTTTTATTTATTATTTGGGTTTGTTAGTATTTGATCTCTTTAGCTTCACTTATTGATATGCAAGCTTTCTAGTAGTTCCACACTATTGTGATCCTTAATTGAATTTGAAGGTGCTTTTGAAAATTTTATAATCCGTATAATATGACGAAACAAAACAACTTAAACATTTTTTTTATTGTTGTGTTGGATCCGCAATTAAGCCTATGGATCCTTAGGATTGGTGGTCATTTAATATATTATATCCCGTAGCGTTGTTTCAGATCCGGGATCGAGCCAAGTATCACAACTTCTTCTACCCATCCTGTATATTGTCCTTTTTTGTTCTGTCTTGGAATACAAATTTTTTATTCTAAACTCTTAAAAAAAAAAAAGAGAGAGATGATTTCAAAAGTTCCAACATTTTTTAAATATCATAGTGTAGGATTCAATTTAATATTTGAACTATGAGTAAGAATCATTATCCTTAAAGTAAGGATAATAATAAAAAATAATTTTTTTAAATATATTTACCTTTTATATTAGTATTTGAAAAATTATTTTGATGTAGACAGAAGCATTATCCACACAGCTTTAGGATTGTAAACATTCCAAGTTTACATATATTCAGATGGGCCAAATGGGCCGAAGAGGTGGATGTAAATTGGGCCGAAGAGAGAGAGTTAGATAGTGAAGATGGCGGAGATAGGTGGCAGTGA

mRNA sequence

ATGGACTTCGACGAGTACGATTACTTGGAGAAAGCCGTGGAGGACCAAGATGATAGGGAGACGAAGAAACCAAAGAGGAGCGAGAGTGAGAGGAACGAGAAAAGCACCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCCGGTGGTCGCGAGGACGAGGAGGTGAAGGTCAAGCGGAGAATGAAGGAAAAGAAAGACACGACAGAGCCTGAAGCGGATCCAGAGAGAGATCAAAGAACTGTATTTGCTTATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGAAATTCTAGGCGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCGATGTCTGTGCCTATGGCTATTGCTCTCTCTGGTCAACTACTTCTTGGGCAACCTGTAATGGTTAAACCTTCGGAGGCTGAGAAGAATCTTGTTCAATCAAATACAACCGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGAAATCTACACTTTAATATGACAGAGACTCACCTTCGAGAGATTTTTGAAGCATTTGGTCCTGTGGAGCTTGTGCAGTTACCTCTTGACCTTGAGTCCGGTCACTGTAAGGGTTTTGGATTTGTTCAATTTGCCCATCTAGAGCATGCAAAGGCTGCACAAAGCTTGAATGGGAAATTAGAAATTGCTGGCCGAACCATCAAGGTTTCATCTGTAACTGATCACATTGGAGCACAAGAGAGCGTTGCAAAATCAAACGACCTTGATGATGATGAAGGAGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATCGCTACTAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTACGAGCTTGCCTGTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCGGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGCAGTCCTAGTGAATGTTTACTATTGAAAAACATGTTTGATCCTTCGACGGAGACAGCACCAGATTTTGACATGGAGATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATACGGCCACGTTAAACATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAGTATGATACTGTGGAAGCGGCCATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCAGGCAGACAGATATCAGTCTTGTTCATGCAACCGCAGAAGCATTATCCACACAGCTTTAGGATTGTAAACATTCCAAGTTTACATATATTCAGATGGGCCAAATGGGCCGAAGAGGTGGATGTAAATTGGGCCGAAGAGAGAGAGTTAGATAGTGAAGATGGCGGAGATAGGTGGCAGTGA

Coding sequence (CDS)

ATGGACTTCGACGAGTACGATTACTTGGAGAAAGCCGTGGAGGACCAAGATGATAGGGAGACGAAGAAACCAAAGAGGAGCGAGAGTGAGAGGAACGAGAAAAGCACCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCCGGTGGTCGCGAGGACGAGGAGGTGAAGGTCAAGCGGAGAATGAAGGAAAAGAAAGACACGACAGAGCCTGAAGCGGATCCAGAGAGAGATCAAAGAACTGTATTTGCTTATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGAAATTCTAGGCGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCGATGTCTGTGCCTATGGCTATTGCTCTCTCTGGTCAACTACTTCTTGGGCAACCTGTAATGGTTAAACCTTCGGAGGCTGAGAAGAATCTTGTTCAATCAAATACAACCGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGAAATCTACACTTTAATATGACAGAGACTCACCTTCGAGAGATTTTTGAAGCATTTGGTCCTGTGGAGCTTGTGCAGTTACCTCTTGACCTTGAGTCCGGTCACTGTAAGGGTTTTGGATTTGTTCAATTTGCCCATCTAGAGCATGCAAAGGCTGCACAAAGCTTGAATGGGAAATTAGAAATTGCTGGCCGAACCATCAAGGTTTCATCTGTAACTGATCACATTGGAGCACAAGAGAGCGTTGCAAAATCAAACGACCTTGATGATGATGAAGGAGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATCGCTACTAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTACGAGCTTGCCTGTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCGGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGCAGTCCTAGTGAATGTTTACTATTGAAAAACATGTTTGATCCTTCGACGGAGACAGCACCAGATTTTGACATGGAGATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATACGGCCACGTTAAACATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAGTATGATACTGTGGAAGCGGCCATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCAGGCAGACAGATATCAGTCTTGTTCATGCAACCGCAGAAGCATTATCCACACAGCTTTAGGATTGTAAACATTCCAAGTTTACATATATTCAGATGGGCCAAATGGGCCGAAGAGGTGGATGTAAATTGGGCCGAAGAGAGAGAGTTAGATAGTGAAGATGGCGGAGATAGGTGGCAGTGA

Protein sequence

MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRRMKEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMQPQKHYPHSFRIVNIPSLHIFRWAKWAEEVDVNWAEERELDSEDGGDRWQ*

Homology

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BLAST of Chy2G032820 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-64
Identity = 187/463 (40.39%), Postives = 246/463 (53.13%), Query Frame = 0


Query: 18  DRETKKPKRSESERNEKSTRKREVDEEAG-----------SGGRED----------EEVK 77
           DRE KK K  E +R+    R+R                  SG + +            +K
Sbjct: 60  DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119

Query: 78  VKRRMKEKKDTTEPEADP-----------ERDQRTVFAYQMPLKATERDVYEFFSKAGKV 137
           + RR    K     +  P           ERD RTVF  Q+  +   RD+ EFFS  GKV
Sbjct: 120 LSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKV 179

Query: 138 RDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQS 197
           RDVR+I DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +
Sbjct: 180 RDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMA 239

Query: 198 NTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFG 257
           N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+G
Sbjct: 240 NNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 299

Query: 258 FVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALN 317
           F+ F+  E A KA + LNG  E+AGR +KV  VT+   A  S +   D D+ E  G+ L 
Sbjct: 300 FITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLG 359

Query: 318 AQSRALLMQKL-DRTGI--------ATSIAGSLGAPVLNGSAPNQRSTSLPVNGQA-AVA 377
              R  LM +L + TG+        A  ++GSL        A  Q   S      A A A
Sbjct: 360 TTGRLQLMARLAEGTGLQIPPAAQQALQMSGSL---AFGAVADLQTRLSQQTEASALAAA 419

Query: 378 APVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHI 435
           A V P              ++C  L NMF+P TE    +D EIK+DV EEC+K+G V HI
Sbjct: 420 ASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHI 479

[Close]

BLAST of Chy2G032820 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-64
Identity = 188/466 (40.34%), Postives = 248/466 (53.22%), Query Frame = 0


Query: 18  DRETKKPKRSESERNEKSTRKREVDEEAG-----------SGGRED----------EEVK 77
           DRE KK K  E +R+    R+R                  SG + +            +K
Sbjct: 60  DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119

Query: 78  VKRRMKEKKDTTEPEADP-----------ERDQRTVFAYQMPLKATERDVYEFFSKAGKV 137
           + RR    K     +  P           ERD RTVF  Q+  +   RD+ EFFS  GKV
Sbjct: 120 LSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKV 179

Query: 138 RDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQS 197
           RDVR+I DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +
Sbjct: 180 RDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMA 239

Query: 198 NTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFG 257
           N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+G
Sbjct: 240 NNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 299

Query: 258 FVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALN 317
           F+ F+  E A KA + LNG  E+AGR +KV  VT+   A  S +   D D+ E  G+ L 
Sbjct: 300 FITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLG 359

Query: 318 AQSRALLMQKL-DRTGI--------ATSIAGSLG-APVLNGSAPNQRSTSLPVNGQA--- 377
              R  LM +L + TG+        A  ++GSL    V   S      T L    +A   
Sbjct: 360 TTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASAL 419

Query: 378 AVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHV 435
           A AA V P              ++C  L NMF+P TE    +D EIK+DV EEC+K+G V
Sbjct: 420 AAAASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGV 479

[Close]

BLAST of Chy2G032820 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-64
Identity = 188/466 (40.34%), Postives = 248/466 (53.22%), Query Frame = 0


Query: 18  DRETKKPKRSESERNEKSTRKREVDEEAG-----------SGGRED----------EEVK 77
           DRE KK K  E +R+    R+R                  SG + +            +K
Sbjct: 60  DRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIK 119

Query: 78  VKRRMKEKKDTTEPEADP-----------ERDQRTVFAYQMPLKATERDVYEFFSKAGKV 137
           + RR    K     +  P           ERD RTVF  Q+  +   RD+ EFFS  GKV
Sbjct: 120 LSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKV 179

Query: 138 RDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQS 197
           RDVR+I DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +
Sbjct: 180 RDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMA 239

Query: 198 NTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFG 257
           N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+G
Sbjct: 240 NNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 299

Query: 258 FVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALN 317
           F+ F+  E A KA + LNG  E+AGR +KV  VT+   A  S +   D D+ E  G+ L 
Sbjct: 300 FITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLG 359

Query: 318 AQSRALLMQKL-DRTGI--------ATSIAGSLG-APVLNGSAPNQRSTSLPVNGQA--- 377
              R  LM +L + TG+        A  ++GSL    V   S      T L    +A   
Sbjct: 360 TTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASAL 419

Query: 378 AVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHV 435
           A AA V P              ++C  L NMF+P TE    +D EIK+DV EEC+K+G V
Sbjct: 420 AAAASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGV 479

[Close]

BLAST of Chy2G032820 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-46
Identity = 139/426 (32.63%), Postives = 221/426 (51.88%), Query Frame = 0


Query: 23  KPKRSESERNEKSTRKREVD-EEAGSGGREDEEVKVKRRMKEKKDTTEPEADPERDQRTV 82
           + +R   ER+ +S+R  + D E+     R  E  + + R +E+      E   ERD+RTV
Sbjct: 186 RSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSEE---ERDRRTV 245

Query: 83  FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSG 142
           F  Q+  + T R++Y+FF +AG VRD +++ D+ S RSKGV YVEF    SV  AIALSG
Sbjct: 246 FVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSG 305

Query: 143 QLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEA 202
           + LLG PV+V+ +EAEKN         + A        +L V N+HFN+T+  ++ IFE 
Sbjct: 306 KRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEP 365

Query: 203 FGPVELVQLPLDLESGHCKGFGFVQFAH-LEHAKAAQSLNGKLEIAGRTIKVSSVTDHIG 262
           FG +E V L  D +    KGFG++Q+ + +    A + +NG  ++AGR ++V    D   
Sbjct: 366 FGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG-FDLAGRNMRVCLGNDKFT 425

Query: 263 AQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRS 322
            + + +     D+       L  Q R+   Q+   +    S      AP+      ++  
Sbjct: 426 TETTSSMLKRFDE------TLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPI 485

Query: 323 TSLPVNGQAAVAAPV-----LPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEI 382
           T   +  + A +  +     L +   PP+       S C LL+NMF+P+ ET+P++  E+
Sbjct: 486 TRDELMKKLARSEDISDNSKLVSEPEPPI------RSRCALLENMFNPAEETSPNWVQEL 545

Query: 383 KEDVEEEC-SKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM 441
           ++DV+EEC  KYG V HI V  N  G ++++++  + A  A   +H RWF GR I    +
Sbjct: 546 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASIL 594

[Close]

BLAST of Chy2G032820 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.6e-41
Identity = 133/354 (37.57%), Postives = 186/354 (52.54%), Query Frame = 0


Query: 18  DRETKKPKRSESERNEKSTRKREVDEEAG--SGGREDEEVKVKRRMKEKKDTTEPEADPE 77
           DR      RS   R E     R      G   G  +    + K  ++E  D   PE   E
Sbjct: 106 DRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPE---E 165

Query: 78  RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPM 137
           RD RTVF  Q+  +   RD+ +FFS  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+
Sbjct: 166 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 225

Query: 138 AIALSGQLLLGQPVMVKPSEAEKN--LVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTET 197
           AI L+GQ LLG P++V+ S+AEKN     +N       GP      +LYVG+LHFN+TE 
Sbjct: 226 AIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGP-----MRLYVGSLHFNITED 285

Query: 198 HLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKV 257
            LR IFE FG ++ + L  D ++G  KG+GF+ F+  E A +A + LNG  E+AGR ++V
Sbjct: 286 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRV 345

Query: 258 SSVTDHI-GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVL 317
             VT+ + G  +      D + D G     +A  R  LM KL     A      L +   
Sbjct: 346 GHVTERLDGGTDITFPDGDQELDLG-----SAGGRFQLMAKL-----AEGAGIQLPSTAA 405

Query: 318 NGSAPNQRSTSLPVNGQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPST 366
             +A   ++ +L +NG   + A + PA  T  +  ++   S+C  L ++F P T
Sbjct: 406 AAAAAAAQAAALQLNGAVPLGA-LNPAALT-ALSPALNLASQCFQLSSLFTPQT 438

[Close]

BLAST of Chy2G032820 vs. ExPASy TrEMBL
Match: A0A0A0KFB3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1)

HSP 1 Score: 771.9 bits (1992), Expect = 1.5e-219
Identity = 434/589 (73.68%), Postives = 436/589 (74.02%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK-- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRS+SERNEKSTRKREVDEEAGSGGREDEEVKVK  
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSDSERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERERDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEREREKEKEKERERRDRER 180

Query: 181 ------------------------------RRMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                         RRMKEKKDTTEPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTTEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 438
           NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ
Sbjct: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 480

[Close]

BLAST of Chy2G032820 vs. ExPASy TrEMBL
Match: A0A1S3B2E3 (RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 2.6e-219
Identity = 432/589 (73.34%), Postives = 436/589 (74.02%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK-- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK  
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERRDRER 180

Query: 181 ------------------------------RRMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                         RRMKEKKDT EPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 438
           NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP+NGQ
Sbjct: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQ 480

[Close]

BLAST of Chy2G032820 vs. ExPASy TrEMBL
Match: A0A1S3B1Y4 (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 766.1 bits (1977), Expect = 8.5e-218
Identity = 432/591 (73.10%), Postives = 436/591 (73.77%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK-- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK  
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERRDRER 180

Query: 181 ------------------------------RRMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                         RRMKEKKDT EPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN 438
           NDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP+N
Sbjct: 421 NDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLN 480

[Close]

BLAST of Chy2G032820 vs. ExPASy TrEMBL
Match: A0A6J1ILK9 (RNA-binding protein 39-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478129 PE=4 SV=1)

HSP 1 Score: 758.1 bits (1956), Expect = 2.3e-215
Identity = 421/566 (74.38%), Postives = 429/566 (75.80%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK-- 60
           MDFDEYDYLEKAVEDQDD+ETKK K+SESERNEKS+RKREVDEEAGSGGR DEE+KVK  
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRERHKEKDRERDKDRRDKEREREKEKERERREREKREREREEERSRRSRSRSVREKER 180

Query: 181 -------RRMKEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 240
                  RRMKEKKD  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI
Sbjct: 181 EVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 240

Query: 241 MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGA 300
           MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL GQPVMVKPSEAEKNLVQSNT+GASGA
Sbjct: 241 MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGA 300

Query: 301 GPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLE 360
           GPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLE
Sbjct: 301 GPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLE 360

Query: 361 HAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRALLMQ 420
           HAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDDEGGGLALNAQSRALLMQ
Sbjct: 361 HAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQ 420

Query: 421 KLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAAPVLPANFTPPVLQSVGSP 438
           KLDRTGIATSIAGSLGAPVLN SAPNQR+TSLP NGQAAVAAPVLPANFTPPVLQSVGSP
Sbjct: 421 KLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQNGQAAVAAPVLPANFTPPVLQSVGSP 480

[Close]

BLAST of Chy2G032820 vs. ExPASy TrEMBL
Match: A0A6J1GD19 (RNA-binding protein 39-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453086 PE=4 SV=1)

HSP 1 Score: 751.9 bits (1940), Expect = 1.7e-213
Identity = 422/591 (71.40%), Postives = 431/591 (72.93%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVK-- 60
           MDFDEYDYLEKAVEDQDD+ETKK K+SESERNEKS+RKREVDEEAGSGGR DEE+KVK  
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 --------------------------------RRMKEKKDTTEPEADPERDQRTVFAYQM 240
                                           RRMKEKKD  EPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL G
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360
           QPVMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVA 420
           LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN 438
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLP+N
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480

[Close]

BLAST of Chy2G032820 vs. NCBI nr
Match: XP_004141977.1 (RNA-binding protein 39 isoform X3 [Cucumis sativus] >KGN48400.1 hypothetical protein Csa_003011 [Cucumis sativus])

HSP 1 Score: 769 bits (1985), Expect = 4.09e-275
Identity = 434/589 (73.68%), Postives = 436/589 (74.02%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRS+SERNEKSTRKREVDEEAGSGGREDEEVKVKR 
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSDSERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERERDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEREREKEKEKERERRDRER 180

Query: 181 -------------------------------RMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                          RMKEKKDTTEPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTTEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 437
           NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ
Sbjct: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 480

[Close]

BLAST of Chy2G032820 vs. NCBI nr
Match: XP_008440993.1 (PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo])

HSP 1 Score: 768 bits (1983), Expect = 8.23e-275
Identity = 432/589 (73.34%), Postives = 436/589 (74.02%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR 
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERRDRER 180

Query: 181 -------------------------------RMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                          RMKEKKDT EPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQ 437
           NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP+NGQ
Sbjct: 421 NDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQ 480

[Close]

BLAST of Chy2G032820 vs. NCBI nr
Match: XP_011657782.1 (RNA-binding protein 39 isoform X1 [Cucumis sativus])

HSP 1 Score: 764 bits (1972), Expect = 4.17e-273
Identity = 434/591 (73.43%), Postives = 436/591 (73.77%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRS+SERNEKSTRKREVDEEAGSGGREDEEVKVKR 
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSDSERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERERDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEREREKEKEKERERRDRER 180

Query: 181 -------------------------------RMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                          RMKEKKDTTEPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTTEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN 437
           NDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN
Sbjct: 421 NDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN 480

[Close]

BLAST of Chy2G032820 vs. NCBI nr
Match: XP_008440991.1 (PREDICTED: RNA-binding protein 39 isoform X2 [Cucumis melo])

HSP 1 Score: 763 bits (1970), Expect = 8.39e-273
Identity = 432/591 (73.10%), Postives = 436/591 (73.77%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR- 60
           MDFDEYDYLEKAVE+QDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR 
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERRDRER 180

Query: 181 -------------------------------RMKEKKDTTEPEADPERDQRTVFAYQMPL 240
                                          RMKEKKDT EPEADPERDQRTVFAYQMPL
Sbjct: 181 REREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAYQMPL 240

Query: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300
           KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP
Sbjct: 241 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQP 300

Query: 301 VMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360
           VMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV
Sbjct: 301 VMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELV 360

Query: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420
           QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS
Sbjct: 361 QLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKS 420

Query: 421 NDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVN 437
           NDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP+N
Sbjct: 421 NDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLN 480

[Close]

BLAST of Chy2G032820 vs. NCBI nr
Match: XP_038881757.1 (RNA-binding protein 39 isoform X2 [Benincasa hispida])

HSP 1 Score: 759 bits (1961), Expect = 1.70e-271
Identity = 428/587 (72.91%), Postives = 433/587 (73.76%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKR- 60
           MDFDEYDYLEKAVE+QDDRETKKPK+SESERNEKS+RKREVDEEAGSGGREDEEVKVKR 
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKKSESERNEKSSRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RSEHENGKEDKDHSGRGRDRHRRDREEEADGGKERDRERNRTRERGSSEKERDRDRDREE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 RDRDRHKEKERERDKDRRDKDRDRERHKEKDRERDKDRRDRDREREKEKERERREREKRE 180

Query: 181 -----------------------------RMKEKKDTTEPEADPERDQRTVFAYQMPLKA 240
                                        RMKEKKD  EPEADPERDQRTVFAYQMPLKA
Sbjct: 181 REREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKA 240

Query: 241 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVM 300
           TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVM
Sbjct: 241 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVM 300

Query: 301 VKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQL 360
           VKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQL
Sbjct: 301 VKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQL 360

Query: 361 PLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSND 420
           PLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSND
Sbjct: 361 PLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSND 420

Query: 421 LDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAA 437
           LDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP+NGQ A
Sbjct: 421 LDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQVA 480

[Close]

BLAST of Chy2G032820 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 538.1 bits (1385), Expect = 7.2e-153
Identity = 301/440 (68.41%), Postives = 345/440 (78.41%), Query Frame = 0


Query: 10  EKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGS--GGREDEEVKV----KRRMKE 69
           E + + + DRE    +R  S+R++   R+R   E+  S    RE++E +V     RR ++
Sbjct: 95  EGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSRRHRD 154

Query: 70  KKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 129
           KKD  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG
Sbjct: 155 KKD--EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 214

Query: 130 YVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYV 189
           Y+EFYD MSVPMAIALSGQL LGQPVMVKPSEAEKNL QSN+T   G GP    DRKLYV
Sbjct: 215 YIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGP---ADRKLYV 274

Query: 190 GNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQ-SLNGK 249
           GNLHFNM+E  LR+IFEAFGPVELVQLPLD E+G CKGFGF+QF  LEH+KAAQ +LNGK
Sbjct: 275 GNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGK 334

Query: 250 LEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSI 309
           LEIAGRTIKVSSV+DHIG Q+S  KS D DDD+GGGLALNAQSRA+LMQKLDR+GIATSI
Sbjct: 335 LEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSI 394

Query: 310 AGSLGAPVLNGSAPNQ--RSTSLPVNGQAAVAAPVLPANFTPP-VLQSVGSPSECLLLKN 369
            GSLG P LNG+A NQ   + S P +        VLP    P  V + VG PSECLLLKN
Sbjct: 395 VGSLGVPGLNGAAFNQPGMNPSFPTS--------VLPTTAIPSFVNEHVGLPSECLLLKN 454

Query: 370 MFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAM 429
           MFDP+TET P+FD+EI++DV +ECSKYG V HIYVDKNSAG VYL++ +VEAA  AQRAM
Sbjct: 455 MFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 514

Query: 430 HLRWFAGRQISVLFMQPQKH 440
           H+RWFA + IS  FM P ++
Sbjct: 515 HMRWFAQKMISATFMPPHEY 521

[Close]

BLAST of Chy2G032820 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 454.1 bits (1167), Expect = 1.4e-127
Identity = 252/399 (63.16%), Postives = 297/399 (74.44%), Query Frame = 0


Query: 58  KRRMKEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 117
           KR   +K+D  EPEADPERDQRTVFAYQ+ L+ATERDVYEFFS+AGKVRDVR+IMDR SR
Sbjct: 210 KRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISR 269

Query: 118 RSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGA----GP 177
           RS+G+GYVEFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNLVQS TT A+GA    GP
Sbjct: 270 RSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQS-TTAAAGAGGMLGP 329

Query: 178 YGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHA 237
           Y    R+LYVGNLH NM+E  LR++FE+FG VELVQ+P D E+G CKGFGFVQFA LE A
Sbjct: 330 YSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDA 389

Query: 238 KAAQSLNGKLEIAGRTIKVSSVTDHIGAQES--VAKSNDLDDDEGGGLALNAQSRALLMQ 297
           + A +LNG+LEIAGR IKVS+VTD     E+     + DLDDD+GGGL+LNAQSRALLMQ
Sbjct: 390 RNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQ 449

Query: 298 KLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAA-----------PVLPANF 357
           KLDR+G A+S  G   A   NG      S + P   Q +  A            V+PA F
Sbjct: 450 KLDRSGTASS-TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGF 509

Query: 358 TPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYVDKNSAG 417
            P     +G PSECLLLKNMFDPSTET  DFD +IKEDV+EECSK+G + HI+VDKNS G
Sbjct: 510 DP-----IGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVG 569

Query: 418 CVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMQPQKH 440
            VYL+++  +AAI AQRA+H RWFAG+ I+  +M  + +
Sbjct: 570 FVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 600

[Close]

BLAST of Chy2G032820 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 453.4 bits (1165), Expect = 2.3e-127
Identity = 259/439 (59.00%), Postives = 316/439 (71.98%), Query Frame = 0


Query: 18  DRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRRMKEKKDTTEPEADPERD 77
           +++  +  RS SER+    R++ ++ E      +D +   +R   +K+D  EPEADPERD
Sbjct: 121 EKDRSRRSRSRSERHRSQEREKSLEIEPKERETKDRDRDRRRHKDKKEDKVEPEADPERD 180

Query: 78  QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAI 137
           QRTVFAYQ+ L+ATERDVYEFFS+AGKVRDVR+IMDR SRRS+G+GYVEFYD MSVPMAI
Sbjct: 181 QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI 240

Query: 138 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGA----GPYGAVDRKLYVGNLHFNMTET 197
           ALSGQ LLGQPVMVKPSEAEKNLVQS TT A+GA    GPY    R+LYVGNLH NM+E 
Sbjct: 241 ALSGQPLLGQPVMVKPSEAEKNLVQS-TTAAAGAGGMLGPYSGGARRLYVGNLHINMSED 300

Query: 198 HLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 257
            LR++FE+FG VELVQ+P D E+G CKGFGFVQFA LE A+ A +LNG+LEIAGR IKVS
Sbjct: 301 DLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 360

Query: 258 SVTDHIGAQES--VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVL 317
           +VTD     E+     + DLDDD+GGGL+LNAQSRALLMQKLDR+G A+S  G   A   
Sbjct: 361 AVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASS-TGLTTAASF 420

Query: 318 NGSAPNQRSTSLPVNGQAAVAA-----------PVLPANFTPPVLQSVGSPSECLLLKNM 377
           NG      S + P   Q +  A            V+PA F P     +G PSECLLLKNM
Sbjct: 421 NGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDP-----IGVPSECLLLKNM 480

Query: 378 FDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMH 437
           FDPSTET  DFD +IKEDV+EECSK+G + HI+VDKNS G VYL+++  +AAI AQRA+H
Sbjct: 481 FDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALH 540

Query: 438 LRWFAGRQISVLFMQPQKH 440
            RWFAG+ I+  +M  + +
Sbjct: 541 GRWFAGKMITATYMTTEAY 551

[Close]

BLAST of Chy2G032820 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 444.9 bits (1143), Expect = 8.3e-125
Identity = 251/407 (61.67%), Postives = 296/407 (72.73%), Query Frame = 0


Query: 59  RRMKEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------VRDVR 118
           R   +K+D  EPEADPERDQRTVFAYQ+ L+ATERDVYEFFS+AGK         VRDVR
Sbjct: 191 RHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVR 250

Query: 119 LIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGAS 178
           +IMDR SRRS+G+GYVEFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNLVQS TT A+
Sbjct: 251 IIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQS-TTAAA 310

Query: 179 GA----GPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFV 238
           GA    GPY    R+LYVGNLH NM+E  LR++FE+FG VELVQ+P D E+G CKGFGFV
Sbjct: 311 GAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFV 370

Query: 239 QFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQES--VAKSNDLDDDEGGGLALNA 298
           QFA LE A+ A +LNG+LEIAGR IKVS+VTD     E+     + DLDDD+GGGL+LNA
Sbjct: 371 QFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNA 430

Query: 299 QSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAA---------- 358
           QSRALLMQKLDR+G A+S  G   A   NG      S + P   Q +  A          
Sbjct: 431 QSRALLMQKLDRSGTASS-TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGII 490

Query: 359 -PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHI 418
             V+PA F P     +G PSECLLLKNMFDPSTET  DFD +IKEDV+EECSK+G + HI
Sbjct: 491 PGVIPAGFDP-----IGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHI 550

Query: 419 YVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMQPQKH 440
           +VDKNS G VYL+++  +AAI AQRA+H RWFAG+ I+  +M  + +
Sbjct: 551 FVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 589

[Close]

BLAST of Chy2G032820 vs. TAIR 10
Match: AT1G48920.1 (nucleolin like 1 )

HSP 1 Score: 73.2 bits (178), Expect = 6.6e-13
Identity = 66/248 (26.61%), Postives = 114/248 (45.97%), Query Frame = 0


Query: 2   DFDEYDYLEKAVEDQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRRM 61
           D DE    EK  + + D  TK  K+S S+ + +S      DEE     +  +   V    
Sbjct: 222 DSDEESEDEKPAQKKAD--TKASKKSSSDESSESEEDESEDEEETPKKKSSDVEMVDAEK 281

Query: 62  KEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 121
              K    P        +T+FA  +       DV  FF +AG+V DVR   +R+    +G
Sbjct: 282 SSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRG 341

Query: 122 VGYVEFYDAMSVPMAIALSGQLLLGQPVMV----KPSEAEKNLVQSNTTGASGAGPYGAV 181
            G+VEF  +     A+   G+ LLG+ + +    +  E  +    +  +G   +G  G  
Sbjct: 342 FGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGD 401

Query: 182 DRKLYVGNLHFNMTE----THLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHA 241
           ++K++V     +++E      LRE F + G ++ V +P+D ++G+ KG  +++F+  E  
Sbjct: 402 EKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGK 461

The following BLAST results are available for this feature:

BLAST of Chy2G032820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	1.2e-64	40.39	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q14498	2.7e-64	40.34	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
Q8VH51	2.7e-64	40.34	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
O13845	1.5e-46	32.63	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q86U06	5.6e-41	37.57	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of Chy2G032820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFB3	1.5e-219	73.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1	[more]
A0A1S3B2E3	2.6e-219	73.34	RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
A0A1S3B1Y4	8.5e-218	73.10	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
A0A6J1ILK9	2.3e-215	74.38	RNA-binding protein 39-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114781...	[more]
A0A6J1GD19	1.7e-213	71.40	RNA-binding protein 39-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Chy2G032820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141977.1	4.09e-275	73.68	RNA-binding protein 39 isoform X3 [Cucumis sativus] >KGN48400.1 hypothetical pro...	[more]
XP_008440993.1	8.23e-275	73.34	PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo]	[more]
XP_011657782.1	4.17e-273	73.43	RNA-binding protein 39 isoform X1 [Cucumis sativus]	[more]
XP_008440991.1	8.39e-273	73.10	PREDICTED: RNA-binding protein 39 isoform X2 [Cucumis melo]	[more]
XP_038881757.1	1.70e-271	72.91	RNA-binding protein 39 isoform X2 [Benincasa hispida]	[more]

BLAST of Chy2G032820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09880.1	7.2e-153	68.41	Splicing factor, CC1-like	[more]
AT2G16940.2	1.4e-127	63.16	Splicing factor, CC1-like	[more]
AT2G16940.1	2.3e-127	59.00	Splicing factor, CC1-like	[more]
AT2G16940.3	8.3e-125	61.67	Splicing factor, CC1-like	[more]
AT1G48920.1	6.6e-13	26.61	nucleolin like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 180..253 e-value: 1.8E-24 score: 97.3 coord: 80..152 e-value: 2.6E-17 score: 73.5 coord: 354..432 e-value: 2.0E-6 score: 37.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 376..429 e-value: 3.0E-5 score: 23.8 coord: 181..251 e-value: 1.4E-18 score: 66.5 coord: 86..148 e-value: 2.5E-11 score: 43.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..156 score: 15.562085
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 179..257 score: 17.915731
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..166 e-value: 7.5E-28 score: 99.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 174..270 e-value: 7.1E-25 score: 89.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 349..448 e-value: 1.7E-31 score: 110.4
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 271..370 e-value: 1.1E-23 score: 84.1
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 15..436 e-value: 4.3E-153 score: 508.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..56 coord: 55..439
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..56 coord: 55..439
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 352..434 e-value: 2.19454E-39 score: 135.365
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 80..152 e-value: 1.52794E-46 score: 153.916
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 350..437
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 178..255
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 72..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G032820.1	Chy2G032820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding