Chy2G029640 (gene) Cucumber (hystrix) v1

Overview
NameChy2G029640
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 4215321 .. 4215539 (+)
RNA-Seq ExpressionChy2G029640
SyntenyChy2G029640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAAGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAGCTTCCCATCACGCCGGCGGCGGAATTGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCCGGCCATCTCTAATTCCTGA

mRNA sequence

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAAGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAGCTTCCCATCACGCCGGCGGCGGAATTGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCCGGCCATCTCTAATTCCTGA

Coding sequence (CDS)

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAAGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAGCTTCCCATCACGCCGGCGGCGGAATTGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCCGGCCATCTCTAATTCCTGA

Protein sequence

MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKASHHAGGGIAGKSSKKVHPGTLFGLPAISNS*
Homology
BLAST of Chy2G029640 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKASHHAGGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPK SHHA GGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLPAISNS 73
          GTLFGL A SNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of Chy2G029640 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKASHHAGGGIAGKSSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPK +HH GGGIAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTLFGLPAISNS 73
          HPGT+FG+P  SNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of Chy2G029640 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKASHHAGGGIAGKSSKKVHP 60
          MSS+GASCA +YVM+K+ +EKL+RME+ER  + E SV+  K S    G   G+ SKKVHP
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS----GSTIGR-SKKVHP 56

Query: 61 G 62
          G
Sbjct: 61 G 56

BLAST of Chy2G029640 vs. ExPASy TrEMBL
Match: A0A7J6E0F2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKASHHAGGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPG 62
          VHPG
Sbjct: 61 VHPG 64

BLAST of Chy2G029640 vs. ExPASy TrEMBL
Match: A0A7J6I0D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKASHHAGGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPG 62
          VHPG
Sbjct: 61 VHPG 64

BLAST of Chy2G029640 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 131 bits (329), Expect = 4.16e-38
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKASHHAGGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPK SHHA GGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLPAISNS 72
          GTLFGL A SNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of Chy2G029640 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 1.73e-35
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKASHHAGGGIAGKSSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPK +HH GGGIAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTLFGLPAISNS 72
          HPGT+FG+P  SNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of Chy2G029640 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (268), Expect = 8.69e-29
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPK-ASHHAGGGIAGKSSKKVH 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK A HHAGGGIAGK+ KKVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTLFGLPAISNS 72
          PG +F + A SNS
Sbjct: 61 PGNVFAVSANSNS 73

BLAST of Chy2G029640 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 2.18e-24
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKASHHAGGGIAGKSSKKVHP 60
          MSS+GASCARVYVMKKK EEKLQRMEQE++GRRED VKP K +HH GG  AG + KKVHP
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-GGAFAGITCKKVHP 60

Query: 61 GTLFGLPAISNS 72
          GT+  +PA + S
Sbjct: 61 GTVISVPASNIS 71

BLAST of Chy2G029640 vs. NCBI nr
Match: KAF4400541.1 (hypothetical protein G4B88_023334 [Cannabis sativa])

HSP 1 Score: 56.6 bits (135), Expect = 1.74e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKASHHAGGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPGTL 63
          VHPG  
Sbjct: 61 VHPGNF 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB82.1e-2794.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1[more]
A0A5A7T0652.0e-2587.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9EUS95.0e-0555.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A7J6E0F26.5e-0553.13Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1[more]
A0A7J6I0D66.5e-0553.13Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN48780.14.16e-3894.44hypothetical protein Csa_002943 [Cucumis sativus][more]
KAA0036273.11.73e-3587.84hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667... [more]
KAG6604014.18.69e-2976.71hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594855.12.18e-2470.83hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4400541.11.74e-0851.52hypothetical protein G4B88_023334 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..72
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..64
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G029640.1Chy2G029640.1mRNA