Chy2G029560 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G029560
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Location	chrH02: 4179713 .. 4182075 (-)
RNA-Seq Expression	Chy2G029560
Synteny	Chy2G029560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCGAAAGGGGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTGTACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGGTATGTTGAAATTCTTAGTGATTTCGATCCTTTTTACTGAAGCCGGAATTTAATTGAAAGAAAATTGTTTTCTTTCTCTTCCCGTTAACATAATTGTTCCGCTGTTTTCCCTTTTACTTGTGCTTAGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATTTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAACCTCCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAGCTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGGATGCGATCTTTCAATGGATTCGACTTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGAAGCGCAAAATCATTTAGTAAGTGCCCCCTTATACGACGCTTCTTTGCTGCAACTCACCTTCTTTTCTCTACTGGTGGCAGTGAAAACGAATCCTTTCATTGTCGAGAAACTGCAAATTCCAAACTTCGTAAGTAATATTTGGATATGATATCTTAAATCGTACAGTAGTAGAATGAGTTATATGGTGCGAGCTCACAACATATGATTTAGTTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAGAACGCTACTAGAAATAAAACCGTGAACAATTTGGTATTGACTCATAGATTTGTTAACAATTCTTGATTTTAGGTTTTGGAGGAGCCCTCGGATAATATGGTGCTCGGCATGCCAGATATACTCCAAACTCCTGGGGTTTGTATCTTTATGGTTTTTGCACATCGCTTATTGCATTGGCCTTTTCATGTTAATATTCTATAGCTATCTGTTATTGCCATTTTTTTCACTATTTGGCGGTGTTTTCACTTAAATTATCTAGGCACATTGATTGTCGGGGTCCAAGGAATGGAATTACTGTAGTGATAGATGGGTGGCTGCAATCAATTATTAATGTTTTATTTTCAATAATTAACGGTGTTTTGTTTTAAATATTTAAGGGTGTCTAAGCTAATTCATGTCTATAAGTAGGGATTTATTGCCTCAATCTGTCAATAAGTTTGAGTTGTGACTTCTTGGTTATAAGTTGGGATCTTGTTGCCACCATCAGTTAAACTTTGTGGTTAATGAAGTCTAAATGTAGGGAATAAGTTCAACACATAGTGGCCATCCCACTACCAAATATTTGAAAATCAAAGTAGAATCACATTATGATAGTTTTTTCTGTGAGGATAGTTGAGGCTAACAAGCTGACCTTAAAGAAGACATGGCCTTCATATACTCATTAGTAAATCGGAAATCAACTTTGCACCTAGTATTTGTCTTGCAATCGGATGCTATTTGAAATTTTGGAACGTTGGAGTATAGTTTTGTTTTTTCTTCTCTCTTTTAATTGTTCATTTTGGATTTGAATATTTCTACTCCGAATCTTCAGTGTAAATGTTCCTATGGATTTCAATACCATGATAAAAGTTCATATTTATATATGTTTTCTGCCAACCAAGTAGGGAGAAAAATTAAGTTCCGAGCTAAGTTGCAAAAAAGTTATTGGGAGCCGGGAGGCAATAGTCGATCATTTCAAAAATCAATCATGACTAGATCGTAGAGGAATGATGGAACACGGCTTCATTTCTAGTAATTAATTTATAGATACAAATTATTTATTTGTTAAGACAGGGAAAATCTTGAACCTATGAATGAAGCTGCAAAGATGAATTCTAAGTACAAAGATCGGCATGGTTATTACTAAAAAATACATGTAAAGATTATAGTTTAATAACATCTCAGGCTTGTTTGAGGGTTTATCCTAACAAAACTTGCTTAAGGCTGTTTTTGTCATTTTTGCCTCTATTTAGTGTATTATACTATAACTATAAGCTAACTAGCCTTCCTTCTATAGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGCTCATTTAGGTCATTTCCATTTCTAGACATGGAGTATTTTGGTGGGTATATATAAATCGTGCTTCTACATTTTTCTAATGGGTAAATTGATATTGTGCAGAATCGGAAGAGGGTTGA

mRNA sequence

ATGGCAAGGCGAAAGGGGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTGTACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATTTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAACCTCCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAGCTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGGATGCGATCTTTCAATGGATTCGACTTTTCCAGTAAATCAGTGAAAACGAATCCTTTCATTGTCGAGAAACTGCAAATTCCAAACTTCGTTTTGGAGGAGCCCTCGGATAATATGGTGCTCGGCATGCCAGATATACTCCAAACTCCTGGGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGAATCGGAAGAGGGTTGA

Coding sequence (CDS)

ATGGCAAGGCGAAAGGGGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTGTACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATTTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAACCTCCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAGCTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGGATGCGATCTTTCAATGGATTCGACTTTTCCAGTAAATCAGTGAAAACGAATCCTTTCATTGTCGAGAAACTGCAAATTCCAAACTTCGTTTTGGAGGAGCCCTCGGATAATATGGTGCTCGGCATGCCAGATATACTCCAAACTCCTGGGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGAATCGGAAGAGGGTTGA

Protein sequence

MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG*

Homology

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BLAST of Chy2G029560 vs. ExPASy TrEMBL
Match: A0A5D3CLG2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002490 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.1e-118
Identity = 220/229 (96.07%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           SIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VINQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. ExPASy TrEMBL
Match: A0A1S3B1M1 (uncharacterized protein LOC103485008 OS=Cucumis melo OX=3656 GN=LOC103485008 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.1e-118
Identity = 220/229 (96.07%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           SIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VINQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. ExPASy TrEMBL
Match: A0A0A0KK81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-117
Identity = 219/229 (95.63%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           MARRK KKTVKKSSPSP+LEAKDEAANDEDVERHAAAIRAIRD+EI RLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           SIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. ExPASy TrEMBL
Match: A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 207/235 (88.09%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAA------NDEDVERHAAAIRAIRDLEIGRLITELR 60
           MARRK KKTVKKSSPS    AKDEAA      +DEDVERHAAAIRAIRD+EI RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEE LP LSIS  G+QGEIEVQWKDTEDEL TNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLS AYP CSAGMRSFNGF+FSSKSVKTNPF  E LQIPNFVLEEPSDNMVLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           ILQTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 235

[Close]

BLAST of Chy2G029560 vs. ExPASy TrEMBL
Match: A0A6J1ILD3 (uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 204/240 (85.00%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGR 60
           MARRK KK+VKKSSPSPV EAKD +AN            DEDVERHA AIRAIRD+EI R
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFF E LP LSISR GEQGEIEVQWKDTEDEL TNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNM 180
           GIDIHASLLHRLS AYPNCSAG+RSFNGF+FSSKSVKTNPF VE LQIPNFVLEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 229
           VLGMPD+LQTPG SNQRLSIGMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESEE 240

[Close]

BLAST of Chy2G029560 vs. NCBI nr
Match: XP_004143493.2 (uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetical protein Csa_004420 [Cucumis sativus])

HSP 1 Score: 437 bits (1124), Expect = 2.87e-154
Identity = 221/229 (96.51%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           MARRK KKTVKKSSPSP+LEAKDEAANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           SIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229
           VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. NCBI nr
Match: XP_008440665.1 (PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo] >KAA0036267.1 uncharacterized protein E6C27_scaffold18G00660 [Cucumis melo var. makuwa] >TYK12661.1 uncharacterized protein E5676_scaffold255G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 434 bits (1115), Expect = 6.76e-153
Identity = 220/229 (96.07%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           SIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229
           V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VINQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. NCBI nr
Match: KAG6604007.1 (hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 404 bits (1037), Expect = 8.04e-141
Identity = 208/241 (86.31%), Postives = 216/241 (89.63%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGR 60
           MARRK KK+VKKSSPSP+ EAKD +AN            DEDVERHA AIRAIRD+EI R
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEE LP LSISR GEQGEIEVQWKDTEDEL TNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNM 180
           GIDIHASLLHRLS AYPNCSAGMRSFNGF+FSSKSVKTNPF VE LQIPNF LEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 229
           VLGMPD+LQTPGVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240

[Close]

BLAST of Chy2G029560 vs. NCBI nr
Match: XP_038882572.1 (uncharacterized protein LOC120073798 [Benincasa hispida])

HSP 1 Score: 400 bits (1028), Expect = 1.23e-139
Identity = 202/229 (88.21%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYF 60
           M RRK +KTVKK SPSPV EAKDEAANDEDVERHAAAIRAIRD+EI RLITELRLLRSYF
Sbjct: 1   MGRRKARKTVKKCSPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           N+EQLQTPLLQFF+E LP LSISR GE+GEIEVQWK+ EDEL +NPAD IDIHASLLHRL
Sbjct: 61  NQEQLQTPLLQFFKEKLPSLSISRRGEEGEIEVQWKNAEDELHSNPADRIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPG 180
           S AYPNCSAG+RS NGF+FSSKSVKTNPF VE L+IPNFVLEEPSDNMVLGMPDILQTPG
Sbjct: 121 STAYPNCSAGVRSLNGFEFSSKSVKTNPFNVENLEIPNFVLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229
           V+NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVY+EDNMEAIHESEEG
Sbjct: 181 VNNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYREDNMEAIHESEEG 229

[Close]

BLAST of Chy2G029560 vs. NCBI nr
Match: XP_023543921.1 (uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400 bits (1029), Expect = 1.33e-139
Identity = 207/241 (85.89%), Postives = 216/241 (89.63%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGR 60
           MARRK KK+VKKSSPSPV EAKD +AN            DEDVERHA AIRAIRD+EI R
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEE LP LSISR GEQGEIEVQWK+TEDEL TNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKNTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNM 180
           GIDIHASLLHRLS AYPNCSAGMRSFNGF+FSSKSVKTNPF VE LQIPNF LEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 229
           VLGMPD+LQTPGVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREENMEAIHESEE 240

[Close]

BLAST of Chy2G029560 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 199.1 bits (505), Expect = 3.8e-51
Identity = 116/232 (50.00%), Postives = 153/232 (65.95%), Query Frame = 0


Query: 1   MARRKGKKTVKKSSPSP------VLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELR 60
           M +RK K+ VK +           +E K E   DE+VER  AAIRAIRD+EI +++T LR
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
           LLRSYF +EQL TP+L FF+ENLP LSISR  E GEIE++W+D   +      +G+D++ 
Sbjct: 61  LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPD 180
           S+L RLS+ + +  +   S  G+D    +VK N    +  Q+ N V +  S+N +L   D
Sbjct: 121 SILKRLSMRFTDLYS-RSSLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGHD 180

Query: 181 ILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE 226
             QTPGV+ QRLS GMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+E
Sbjct: 181 AFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230

The following BLAST results are available for this feature:

BLAST of Chy2G029560 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G029560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLG2	8.1e-118	96.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B1M1	8.1e-118	96.07	uncharacterized protein LOC103485008 OS=Cucumis melo OX=3656 GN=LOC103485008 PE=...	[more]
A0A0A0KK81	4.0e-117	95.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1	[more]
A0A1S4DWB9	2.2e-107	88.09	uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=...	[more]
A0A6J1ILD3	1.2e-105	85.00	uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496...	[more]

BLAST of Chy2G029560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143493.2	2.87e-154	96.51	uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetica...	[more]
XP_008440665.1	6.76e-153	96.07	PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo] >KAA0036267.1 unc...	[more]
KAG6604007.1	8.04e-141	86.31	hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882572.1	1.23e-139	88.21	uncharacterized protein LOC120073798 [Benincasa hispida]	[more]
XP_023543921.1	1.33e-139	85.89	uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy2G029560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39630.1	3.8e-51	50.00	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR37248	TRANSLATION INITIATION FACTOR	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G029560.1	Chy2G029560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity