Chy2G029220 (gene) Cucumber (hystrix) v1

Overview
NameChy2G029220
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLate embryogenesis abundant protein
LocationchrH02: 3976578 .. 3978548 (-)
RNA-Seq ExpressionChy2G029220
SyntenyChy2G029220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATATGCTCGCCTGAGCTTCGATCCCGTCAAGCGATTAGTTTTGCTACTGCACCTGATCAGAACCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACGGGGTTAGTAGACTCCATTTTGTTGATTATTTTGGCCAATGTTTATGTTTTTTTAAAAAAGAATTATATAAATATTTAAACCAACTATTAAATAAAAATTTTAAAAATAAAAATATGCTTTTAGTTTTCAAAACAAAAGAAACAGACAACGAAATATGAAAATTTTGAAAACAAAATGATTGTCAGAATGGGACTTTATTTTTTGTTTTGTTTCTTTCAATATGAAATGGGTTAATGTGTGAAAACAGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACAGGAATAAAAAACCAGTCAATCAACATGGTAATTAAACACGTACACATCCTTAAAAGGAAAAAGTAAATGTGTGCATGATTTACTAGTTAAATGATTTTAATTAGTATATTGTTGTTTTGATGATGTGATTGAAGAATATGATAAAAGCCAAGGGAGCGAAGTGAAGGAGAAGGAGAAGTCACGCCATCAAGCTCATCCAAATTGAACTGCTCGACAATATGTTGTTGTTTGTTGGGTTGGTAGCTCCGTGTCGTCGAGTGTTTGGTTTCTCATCTTTTTGTTGGATATATCGTTTTGTGGGAATTTAGGTTCGTTATTCGTCACTATTTTCCTCATGTGGTAACTAAAGATGGTTTCACTTTCACCTGTACGTGTATATTATTGGGTATTTTCTTCATATAGTAAGGATGTATCCTTTTCATGGTAATTTTGATATTTGCATCATATGAACATATGAAAAACAACGTTCAATCACAATAATAAATGAAATGCTCAATAGTTGAATAGCGCGCTATAGATCTGTAGGATGTTTCTTAGCTTCCCAATCTCTCTAAAGATGATGCCTTAAAGGTCGGACCGTATATATTTATGTTCTTGAATTCATCTCTTATATTATACGTAGGTGGAGGTAATCTTTAAAACTTTTAAGGAATTTTGAACTGGATAACATTTTTATATTTTGTATAATGTTACTCAGTAATCGATTTAAATTGAAATAAATTGACTGACCTAGGGGAAAGAAATTTGATTAAAATATTACTCGAGTTTGTGAACAATAATTTCAAAAACAAAATAAAATTTGATACAAACGGTAATACAAGGAGATAATATTTGATACAATGAATATAAAATAAAAAAAAACTCCCAACATAATCAGCCCAGTAAACTCTAGGCAATAAAAAGTAATGTGAAAAATATTATATATTAATTAATTAGAGATATTAATACAAAAATATTAAATATTAAATTATTAATATGAAAAAGACCAAGTAAGAGTAATCCCAATGAATCCCTTGATAAGACATCTAAATTAAGACGGTAAAAGTTGGGAACTTTCTTCAAATCTGCAGACCTTCTTAGTCCCATATTTTAAAAATAGGTTTAGAAAAGTACTTCAAATTTCTATTTCAAATTTAAATGTTATACCGCGTCTCATATTAGAACCATAAATTTTAAAATTTCAGGACTAAAGGAATCTATTAAGTCCTTTCTGGCTTTTAAAGATATATATATATATATTTTTTATATTCAAACTATTAGTAATATACTCTATTAAGTTTTTAGGATGGTGGTAACATTTTTTAAAAATAATTTAGTTTTTAAATCATATTTCACACAGAATTTAGTTAAAAAGAAAGTGAGATTTCCAAAAATAGCACAAAATTATTTTTGAAATTTTTTAATTATCTAATAGGTAAATTTTGA

mRNA sequence

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATATGCTCGCCTGAGCTTCGATCCCGTCAAGCGATTAGTTTTGCTACTGCACCTGATCAGAACCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACGGGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACAGGAATAAAAAACCAGTCAATCAACATGGTAAATTTTGA

Coding sequence (CDS)

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATATGCTCGCCTGAGCTTCGATCCCGTCAAGCGATTAGTTTTGCTACTGCACCTGATCAGAACCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACGGGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACAGGAATAAAAAACCAGTCAATCAACATGGTAAATTTTGA

Protein sequence

MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQHGKF*
Homology
BLAST of Chy2G029220 vs. ExPASy TrEMBL
Match: A0A0A0KGG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           MINAIRFGRTPPPIVLTSPLPPKLRRI SPEL SRQAISFATAPD+NPKCEEMDDSQNKT
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQH 110
           KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEH NKKPVNQH
Sbjct: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQH 109

BLAST of Chy2G029220 vs. ExPASy TrEMBL
Match: A0A5D3CN97 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002150 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.9e-44
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ICSPELRSRQAISFATAPDQNPKCEEMDDSQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR ICS ELRSRQA  FATAPDQNPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQH 110
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG     DD+EHRNKK VN+H
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

BLAST of Chy2G029220 vs. ExPASy TrEMBL
Match: A0A1S3B3C5 (uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.9e-44
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ICSPELRSRQAISFATAPDQNPKCEEMDDSQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR ICS ELRSRQA  FATAPDQNPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQH 110
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG     DD+EHRNKK VN+H
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

BLAST of Chy2G029220 vs. ExPASy TrEMBL
Match: A0A6J1IUE6 (uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.5e-27
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           MINAIRFGR+PPPIVLT PLPP+LRR+ SPELRSRQ I F+TAPDQNP+   MDDS+N  
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPR--NMDDSKNTA 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKP 106
           K+TGDIM DSFG+ YA RSE EGFGG Y    +S +      KKP
Sbjct: 61  KQTGDIMTDSFGQAYACRSEYEGFGGIYRW-IESTEVGAENEKKP 102

BLAST of Chy2G029220 vs. ExPASy TrEMBL
Match: A0A6J1BUB9 (uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005770 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           M +AIR GR+PPP VLT+PLPP+LRR  SPELRSRQ I  ATAP  +   + MDDS+N  
Sbjct: 1   MFHAIRLGRSPPPSVLTTPLPPQLRRRSSPELRSRQVIGLATAP-ADQSSDNMDDSKNTV 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRN 103
           K+TGDIM  SFGEGYATRS+EEGFGG YGG     DD E +N
Sbjct: 61  KKTGDIMSHSFGEGYATRSDEEGFGGIYGGNRSDDDDTEGKN 101

BLAST of Chy2G029220 vs. NCBI nr
Match: XP_011658492.1 (uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical protein Csa_003589 [Cucumis sativus])

HSP 1 Score: 212 bits (539), Expect = 1.29e-68
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           MINAIRFGRTPPPIVLTSPLPPKLRRI SPEL SRQAISFATAPD+NPKCEEMDDSQNKT
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQH 109
           KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEH NKKPVNQH
Sbjct: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQH 109

BLAST of Chy2G029220 vs. NCBI nr
Match: XP_008441122.1 (PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo] >KAA0036233.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK12628.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (469), Expect = 6.25e-58
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ICSPELRSRQAISFATAPDQNPKCEEMDDSQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR ICS ELRSRQA  FATAPDQNPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKPVNQH 109
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG     DD+EHRNKK VN+H
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

BLAST of Chy2G029220 vs. NCBI nr
Match: XP_038883658.1 (uncharacterized protein LOC120074572 [Benincasa hispida])

HSP 1 Score: 159 bits (403), Expect = 6.64e-48
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           MINAIRFGRTPPPIVLTSPLPP+LRRICSPELRSRQAI  ATAPDQN    +MDDSQNK 
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRICSPELRSRQAIGLATAPDQNSN--DMDDSQNKA 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKK 104
           KETGDIMCDSFGE YATRSEEEGFGGTYG    S  DDE  NKK
Sbjct: 61  KETGDIMCDSFGEAYATRSEEEGFGGTYGRNQPS--DDETDNKK 100

BLAST of Chy2G029220 vs. NCBI nr
Match: XP_022978574.1 (uncharacterized protein LOC111478513 [Cucurbita maxima])

HSP 1 Score: 130 bits (326), Expect = 3.56e-36
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 0

Query: 1  MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
          MINAIRFGR+PPPIVLT PLPP+LRR+ SPELRSRQ I F+TAPDQNP+   MDDS+N  
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPR--NMDDSKNTA 60

Query: 61 KETGDIMCDSFGEGYATRSEEEGFGGTY 88
          K+TGDIM DSFG+ YA RSE EGFGG Y
Sbjct: 61 KQTGDIMTDSFGQAYACRSEYEGFGGIY 86

BLAST of Chy2G029220 vs. NCBI nr
Match: XP_023543425.1 (uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127 bits (319), Expect = 3.44e-35
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDSQNKT 60
           M+NAIRF R+PPPIVLT PLPP+LRRI  PELRSRQ ISF+TAPDQNP+   MDDS+N  
Sbjct: 1   MMNAIRFARSPPPIVLTLPLPPQLRRIDLPELRSRQLISFSTAPDQNPQ--NMDDSKNTA 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKP 105
           K+T D+M DSFG  YA+RSEEEGFGG Y    +S D+     KKP
Sbjct: 61  KQTEDLMTDSFGHAYASRSEEEGFGGIYR-SVESTDEGAENEKKP 102

BLAST of Chy2G029220 vs. TAIR 10
Match: AT5G66780.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTS--PLPPKLRRICSPELRSRQAISFATAPDQNPKCEEMDDS-Q 60
           MINA +  R+ P     S    P +L R  +        +SFAT  DQ    ++MD   +
Sbjct: 1   MINAFKTIRSLPSNTTVSFCSTPSRLGRKVT-------GVSFATTSDQ----QKMDKKPE 60

Query: 61  NKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHRNKKP 106
           N  ++TGD+M  S+GEGYATRS+EEGFGG YGG      ++E     P
Sbjct: 61  NPNEKTGDVMSHSYGEGYATRSDEEGFGGIYGGNQTLQKENEIHENHP 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGG32.2e-5296.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1[more]
A0A5D3CN972.9e-4486.36Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3B3C52.9e-4486.36uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=... [more]
A0A6J1IUE65.5e-2766.67uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513... [more]
A0A6J1BUB91.0e-2564.71uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
XP_011658492.11.29e-6896.33uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical ... [more]
XP_008441122.16.25e-5886.36PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo] >KAA0036233.1 lat... [more]
XP_038883658.16.64e-4882.69uncharacterized protein LOC120074572 [Benincasa hispida][more]
XP_022978574.13.56e-3675.00uncharacterized protein LOC111478513 [Cucurbita maxima][more]
XP_023543425.13.44e-3565.71uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G66780.11.3e-0939.81unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..62
NoneNo IPR availablePANTHERPTHR36410EXPRESSED PROTEINcoord: 1..108
NoneNo IPR availablePANTHERPTHR36410:SF1EXPRESSED PROTEINcoord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G029220.1Chy2G029220.1mRNA