Chy2G029110 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G029110
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 3927018 .. 3928530 (+)
RNA-Seq Expression	Chy2G029110
Synteny	Chy2G029110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAAGTAAGCTTTCTTTCCCATTATTATTTGTATATGTTGAGTCTGTAACATTGAATCTGATTAAATGAATAAGTCTGATCGAGGGAGATGAGCTAATGCAACAACTATTTCCCAGTTTAAAATTTCCACATCTTTCATTTTGATGGAAGATCAACGATTTAAATAGAATGAGAAAACAATAGTGAGGATTTAGAAGTTTAAGTTATGTAATGTTGGTTTATTTGGGATTGTAAAACTCTTCTTTGTTCCCATAACATAGCATGGAGATCATTGCTTTTTGTTTCTGCAGCCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTGATGTAGATAGAAAAGGTACTTAATTCTTCCGTTTAATTCCCGATGAATTTGTTATCTAATTAAATTTTTTATGTATGCTATTATAATTATTATTTGATTTTTTTTTCCGAGTTCAACCATATATGATATGTGTGTTGGGGGTTGGGGGATATTAACATCTTGGTCAAGAACATATGCCTCTGGGTTAGATTATCACTGTTTTTATAATAAAATAATTAATACTATTCGTTTGAATGATACTTTACGTAAAAGACACTGGTTCAGAACATACCGCGTATAGGACATGTGAGGAGCTGTAGACTTTTATTGCATTGAACATTAAGGACAGAAGAACATATCTTTTTCCACAATTTTCCACCAAAATATATTCTTGTATTCAGAACTGGACAAAAATTTAAGAGCTTCTTTCTTATCAATTTTAACTGTCTACGCTCCTACTTTGCCCGCCTGTCTGGGCTCACCTACTAACTCCAGCCAGAAATTTCACACATGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGGACAGAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTACTTTGCGTACCTTATCCATAATGATATTTGCCCTGGAGTGTGAACTTTGTTACTCTCCATTTTAATTAATAAATTTGAGTGTATAAGCTTAAGTCATAAGGTTGAAAAGTTGAAGTTCATGTAATTACTAATTTGTGCTGAGTTACAGAAATTTTGAGTGTAATTTGATTTATAGGGTTGTAAATTGTTGAAGTTACCAAATATAGGTTTGTTTTCTATATAGCTCAACTATCGTCAACTTCTATTCTCCCACCCACATATTATTATGAAAAGAAAACTATAGATTAACAAATTTGTAGGTTTAAAGGAATAAATTTAAAGTCCTGGAAAAAAACCAAATTTATAAATTAAACATATTTGATTTCTGAAATTTCATTATACGAATCCATAATTTAAAGCATAGACGTACCACCACCTAAATTACTGAATATTTAAATTATAACTCCAGGGTTGAAATGTCACATTCGTCCTTTTTTTTTCAGGTTCAGTAG

mRNA sequence

ATGTTTCAACCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTGATAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTTCAGTAG

Coding sequence (CDS)

ATGTTTCAACCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTGATAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTTCAGTAG

Protein sequence

MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIDSQVTISDNTIPKGPKSILRLCYEMYFYDAEVLDVVLVQ*

Homology

[Close]

BLAST of Chy2G029110 vs. ExPASy TrEMBL
Match: A0A0A0KJ46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502720 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIDSQVTISDNTIPKGPKSILRLCYEMYFYD 60
          MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFI SQVTISDNTIPKGPKSILRLCYEMYFYD
Sbjct: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60

Query: 61 AEVLDVVLVQ 71
          AEVLDVVLVQ
Sbjct: 61 AEVLDVVLVQ 70

[Close]

BLAST of Chy2G029110 vs. NCBI nr
Match: KGN48834.1 (hypothetical protein Csa_003737 [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 1.40e-44
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIDSQVTISDNTIPKGPKSILRLCYEMYFYD 60
          MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFI SQVTISDNTIPKGPKSILRLCYEMYFYD
Sbjct: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60

Query: 61 AEVLDVVLVQ 70
          AEVLDVVLVQ
Sbjct: 61 AEVLDVVLVQ 70

[Close]

BLAST of Chy2G029110 vs. NCBI nr
Match: XP_031743879.1 (uncharacterized protein LOC105435935 isoform X3 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.72e-12
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 3  QPVLKWEKRHEWRTFKSYSFQDHLRVKFI 31
          +PVLKWEKRHEWRTFKSYSFQDHLRVKFI
Sbjct: 21 EPVLKWEKRHEWRTFKSYSFQDHLRVKFI 49

[Close]

BLAST of Chy2G029110 vs. NCBI nr
Match: XP_031743878.1 (uncharacterized protein LOC105435935 isoform X2 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.83e-12
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 3  QPVLKWEKRHEWRTFKSYSFQDHLRVKFI 31
          +PVLKWEKRHEWRTFKSYSFQDHLRVKFI
Sbjct: 21 EPVLKWEKRHEWRTFKSYSFQDHLRVKFI 49

[Close]

BLAST of Chy2G029110 vs. NCBI nr
Match: XP_031743877.1 (uncharacterized protein LOC105435935 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.67e-12
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 3  QPVLKWEKRHEWRTFKSYSFQDHLRVKFI 31
          +PVLKWEKRHEWRTFKSYSFQDHLRVKFI
Sbjct: 21 EPVLKWEKRHEWRTFKSYSFQDHLRVKFI 49

The following BLAST results are available for this feature:

BLAST of Chy2G029110 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G029110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ46	3.6e-32	98.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502720 PE=4 SV=1	[more]

BLAST of Chy2G029110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48834.1	1.40e-44	98.57	hypothetical protein Csa_003737 [Cucumis sativus]	[more]
XP_031743879.1	1.72e-12	96.55	uncharacterized protein LOC105435935 isoform X3 [Cucumis sativus]	[more]
XP_031743878.1	2.83e-12	96.55	uncharacterized protein LOC105435935 isoform X2 [Cucumis sativus]	[more]
XP_031743877.1	7.67e-12	96.55	uncharacterized protein LOC105435935 isoform X1 [Cucumis sativus]	[more]

BLAST of Chy2G029110 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G029110.1	Chy2G029110.1	mRNA