Chy2G029030 (gene) Cucumber (hystrix) v1

Overview
NameChy2G029030
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 3889066 .. 3889559 (-)
RNA-Seq ExpressionChy2G029030
SyntenyChy2G029030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATCATTAATTTCACTGCACAATGCTTTCATCGAGCTTCAGCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTGCTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGTATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCGTATTTCACTTCAAATACCACTTCCCTTGTTCCTCCCATCTTTCTTTTTTTATATCTTTTTGTTTATTGTATCGCTTAATTCAGCGGCAGGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGATGA

mRNA sequence

ATGCCCATCATTAATTTCACTGCACAATGCTTTCATCGAGCTTCAGCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTGCTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGTATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCCGGCAGGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGATGA

Coding sequence (CDS)

ATGCCCATCATTAATTTCACTGCACAATGCTTTCATCGAGCTTCAGCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTGCTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGTATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCCGGCAGGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGATGA

Protein sequence

MPIINFTAQCFHRASALSHISHSAPAAAVAMEDKDNNIWRDRQRQSLIATFPKNQHRNFSKTTPDSVSICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRQGFLYFPTVLKLFSSIGCCDX
Homology
[Close]
BLAST of Chy2G029030 vs. ExPASy TrEMBL
Match: A0A0A0KH12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502790 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 1   MPIINFTAQCFHRASALSHISHSAPAAAVAMEDKDNNIWRDRQRQSLIATFPKNQHRNFS 60
           MP INFTAQCFHRAS+LSHISHSAPAAAVAMEDKDNNIWRDRQRQSLI TFPKNQHRNFS
Sbjct: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60

Query: 61  KTTPDSVSICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRQGFL 120
           KTTPDS SICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFR  FL
Sbjct: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120

Query: 121 YFP 124
            FP
Sbjct: 121 IFP 123

[Close]
BLAST of Chy2G029030 vs. ExPASy TrEMBL
Match: A0A5A7T057 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002000 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.4e-34
Identity = 84/136 (61.76%), Postives = 88/136 (64.71%), Query Frame = 0 

Query: 1   MPIINFTAQCFHRASALSHISHSAPAAAVAMEDKDNNIWRDRQRQSLIATFPKNQHRNFS 60
           M  INFTAQCF RAS L HISHSA AA +AMEDKDNNIWRDRQRQSLIATF KNQ RNF 
Sbjct: 1   MTTINFTAQCFDRASTLLHISHSAAAATMAMEDKDNNIWRDRQRQSLIATFLKNQLRNFR 60

Query: 61  KTTPDSVSICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRQGFL 120
           KTTPDSVSIC+RLPFSLSC   F  ++                              GFL
Sbjct: 61  KTTPDSVSICSRLPFSLSCLIRFPELLSSSPSMNHPRVYRFFGLQHPDNLFLQDSGIGFL 120

Query: 121 YFPTVLKLFSSIGCCD 137
           YFP VLK FSSI CCD
Sbjct: 121 YFPIVLKPFSSIDCCD 136

[Close]
BLAST of Chy2G029030 vs. NCBI nr
Match: KGN48843.1 (hypothetical protein Csa_004016 [Cucumis sativus])

HSP 1 Score: 237 bits (605), Expect = 3.40e-78
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 1   MPIINFTAQCFHRASALSHISHSAPAAAVAMEDKDNNIWRDRQRQSLIATFPKNQHRNFS 60
           MP INFTAQCFHRAS+LSHISHSAPAAAVAMEDKDNNIWRDRQRQSLI TFPKNQHRNFS
Sbjct: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60

Query: 61  KTTPDSVSICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRQGFL 120
           KTTPDS SICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFR  FL
Sbjct: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120

Query: 121 YFP 123
            FP
Sbjct: 121 IFP 123

[Close]
BLAST of Chy2G029030 vs. NCBI nr
Match: KAA0036218.1 (hypothetical protein E6C27_scaffold18G00150 [Cucumis melo var. makuwa] >TYK12614.1 hypothetical protein E5676_scaffold255G002000 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 3.37e-46
Identity = 91/151 (60.26%), Postives = 96/151 (63.58%), Query Frame = 0 

Query: 1   MPIINFTAQCFHRASALSHISHSAPAAAVAMEDKDNNIWRDRQRQSLIATFPKNQHRNFS 60
           M  INFTAQCF RAS L HISHSA AA +AMEDKDNNIWRDRQRQSLIATF KNQ RNF 
Sbjct: 1   MTTINFTAQCFDRASTLLHISHSAAAATMAMEDKDNNIWRDRQRQSLIATFLKNQLRNFR 60

Query: 61  KTTPDSVSICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSAS----RQFVFSGFR 120
           KTTPDSVSIC+RLPFSLSC   F                 LL +S S    R + F G +
Sbjct: 61  KTTPDSVSICSRLPFSLSCLIRFPE---------------LLSSSPSMNHPRVYRFFGLQ 120

Query: 121 Q-----------GFLYFPTVLKLFSSIGCCD 136
                       GFLYFP VLK FSSI CCD
Sbjct: 121 HPDNLFLQDSGIGFLYFPIVLKPFSSIDCCD 136

The following BLAST results are available for this feature:
BLAST of Chy2G029030 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G029030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH122.5e-5894.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502790 PE=4 SV=1[more]
A0A5A7T0577.4e-3461.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Chy2G029030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48843.13.40e-7894.31hypothetical protein Csa_004016 [Cucumis sativus][more]
KAA0036218.13.37e-4660.26hypothetical protein E6C27_scaffold18G00150 [Cucumis melo var. makuwa] >TYK12614... [more]
BLAST of Chy2G029030 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G029030.1Chy2G029030.1mRNA