Chy2G028560 (gene) Cucumber (hystrix) v1

Overview
NameChy2G028560
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 3569780 .. 3570180 (-)
RNA-Seq ExpressionChy2G028560
SyntenyChy2G028560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCTGATCTCCAGACTCCACACCCACAACCACTTCCCCCACCGTCTCACCGTCTCACCGCCATCGTCCACCGCCGCCTCCGCCTCCGCCTCAGCCTCCGTCTTTGTTTTCTTACCCAGGTATATATATTCTTAATATTAATTTTGAGAGCATGGTATGTACAGTTAATGATAGAAGTGGCAGAAAACAAAGACATGGGAGATGAATTTGAGAGTATTTAGGTTTAAATTAGGGTTTGGTATTTTCGAGGTTTCTGATTACACTTTCTGCCTTCAAAATTCTCGACAACTAG

mRNA sequence

ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCTGATCTCCAGACTCCACACCCACAACCACTTCCCCCACCGTCTCACCGTCTCACCGCCATCGTCCACCGCCGCCTCCGCCTCCGCCTCAGCCTCCGTCTTTGTTTTCTTACCCAGGTTTCTGATTACACTTTCTGCCTTCAAAATTCTCGACAACTAG

Coding sequence (CDS)

ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCTGATCTCCAGACTCCACACCCACAACCACTTCCCCCACCGTCTCACCGTCTCACCGCCATCGTCCACCGCCGCCTCCGCCTCCGCCTCAGCCTCCGTCTTTGTTTTCTTACCCAGGTTTCTGATTACACTTTCTGCCTTCAAAATTCTCGACAACTAG

Protein sequence

MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLQTPHPQPLPPPSHRLTAIVHRRLRLRLSLRLCFLTQVSDYTFCLQNSRQLX
Homology
[Close]
BLAST of Chy2G028560 vs. ExPASy TrEMBL
Match: A0A0A0KKM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505260 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL 41
          MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL
Sbjct: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL 40

[Close]
BLAST of Chy2G028560 vs. NCBI nr
Match: KGN48897.1 (hypothetical protein Csa_003089 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 5.27e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL 40
          MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL
Sbjct: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDL 40

The following BLAST results are available for this feature:
BLAST of Chy2G028560 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G028560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM12.8e-13100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505260 PE=4 SV=1[more]
BLAST of Chy2G028560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48897.15.27e-19100.00hypothetical protein Csa_003089 [Cucumis sativus][more]
BLAST of Chy2G028560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G028560.1Chy2G028560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane