Chy2G027730 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G027730
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	heterogeneous nuclear ribonucleoprotein H2 isoform X1
Location	chrH02: 3089587 .. 3091289 (-)
RNA-Seq Expression	Chy2G027730
Synteny	Chy2G027730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGACCCAGAGGGTAAGTCCAGAATTTCTGACCTTTCTCTCTTCGCTTTTGTTTTGTTTCATTGGAATTTTCATGGGTTTTTATTGAATTTGTGTGTTGGGATTGAGAGCAGCTGGATTGAGGGATGAGTTCCTCTGTTATTCGTCTTGGTGTTTTTTTATTTTTATTTTTATTTTTATTATAATTGTTATCAAATGGGGTTTTTTAGTAGAACATATTCTTCAAAGAACAACTTATGTTTTTGTTAATATAATTTAAATTGAGGTCCTTTTTTTGTTTTATAAATAAAATGAAGGCGCGATTTATGAAACCATCCATGTGTTGCATTTTATTTACTTGATTCTCTTTAACTTTAAAATAAACTCAATACAGTCGGTGGTTTTTCTTCGATCGGGTCGATTATCAGGAATCTCGTAGGATGCCATATATCTGAGTTGTATTAGGATTTGATTTTTCTTTTCTAAGTTTTAACCAGAAAGCAAGAATTTGAATATTGTATCGGTGTCTTATGACCTGTCTCGTTTTTTTTAATACCACTATCAAATTTAGAAGAAGCTTTTGCAGCGTCATTTAAGCTATGGAGGCCAGTGATTTAATTGGTTAATTAATGTTCTCGTGAATTGTCTTTACTTTAACATGAAGGGCTTAAATTTATATAAATATGGGGAAATCATTTTCTACTGCTTGTGATGGGTTGGTGTTCACTGAGTCTCCAAATGCTTTTTCTGCTGGTACTTTTAGAAAGTCTTACTTATTCTATATCTAGTTAAATTGTTTTGTTTATAGGAGTGGTAATGGCATGTAACTTCATTGACCATAAATCGTGTACACCAATAGGTTTTAGAGGTGTAGGTTGGGCTTGGTTTTATTAACTTGCTTGAGTGGGGATTTTTCTTTTCTTTTTTCTGGGTTGGTAATTGAAGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTCCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGACGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGACGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTACAACGCTGTTGCTGCAGAAGTAAATTATGAGGGCATTTATGATAATGACTACCACGGAAGCCCTCCTCCTCGACAAAAGAGGTTCAGTGACAAGGACCAGATGGAATACACCGAGATACTGAAACTTCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTTGACCTTGCAGAAGATAGGATACATATTGCAAGTCGCCCAGATGGGAAGGCTACCGGAGAGGCCTATGTGGAGTTTGCTTCAGCAGAGGAGGCAAAGGGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGATACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

mRNA sequence

ATGTACGGACCCAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTCCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGACGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGACGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTACAACGCTGTTGCTGCAGAAGTAAATTATGAGGGCATTTATGATAATGACTACCACGGAAGCCCTCCTCCTCGACAAAAGAGGTTCAGTGACAAGGACCAGATGGAATACACCGAGATACTGAAACTTCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTTGACCTTGCAGAAGATAGGATACATATTGCAAGTCGCCCAGATGGGAAGGCTACCGGAGAGGCCTATGTGGAGTTTGCTTCAGCAGAGGAGGCAAAGGGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGATACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

Coding sequence (CDS)

ATGTACGGACCCAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTCCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGACGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGACGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTACAACGCTGTTGCTGCAGAAGTAAATTATGAGGGCATTTATGATAATGACTACCACGGAAGCCCTCCTCCTCGACAAAAGAGGTTCAGTGACAAGGACCAGATGGAATACACCGAGATACTGAAACTTCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTTGACCTTGCAGAAGATAGGATACATATTGCAAGTCGCCCAGATGGGAAGGCTACCGGAGAGGCCTATGTGGAGTTTGCTTCAGCAGAGGAGGCAAAGGGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGATACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

Protein sequence

MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ*

Homology

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BLAST of Chy2G027730 vs. ExPASy Swiss-Prot
Match: Q3US41 (Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-26
Identity = 74/208 (35.58%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 118
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284

Query: 119 DRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEI 178
            + +MG RY+EV++   +D+        N                  +F  K   E   I
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSK---ENQVI 344

Query: 179 LKLRGLPFSVTKSNIIEFFGE---FDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAM 238
           +++RGLPF+ T   ++ FFG+       ++ I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 345 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 404

Query: 239 SKDKMTIGSRYVELFPSTPNEARRAESR 261
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 405 RKHKELLGKRYIELFRSTAAEVQQVLNR 414

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BLAST of Chy2G027730 vs. ExPASy Swiss-Prot
Match: Q6NXG1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-26
Identity = 74/208 (35.58%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 118
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 119 DRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEI 178
            + +MG RY+EV++   +D+        N                  +F  K   E   I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSK---ENQVI 345

Query: 179 LKLRGLPFSVTKSNIIEFFGE---FDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAM 238
           +++RGLPF+ T   ++ FFG+       ++ I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 239 SKDKMTIGSRYVELFPSTPNEARRAESR 261
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

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BLAST of Chy2G027730 vs. ExPASy Swiss-Prot
Match: B2RYD2 (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-26
Identity = 74/208 (35.58%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 118
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 119 DRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEI 178
            + +MG RY+EV++   +D+        N                  +F  K   E   I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSK---ENQVI 345

Query: 179 LKLRGLPFSVTKSNIIEFFGE---FDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAM 238
           +++RGLPF+ T   ++ FFG+       ++ I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 239 SKDKMTIGSRYVELFPSTPNEARRAESR 261
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

[Close]

BLAST of Chy2G027730 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-25
Identity = 74/202 (36.63%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADTAND------- 131

Query: 179 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMS 238
             ++LRGLPF  TK  II+FF   ++  + I +   P+GK TGEA+V+FAS E A+ A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTPNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

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BLAST of Chy2G027730 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-25
Identity = 73/202 (36.14%), Postives = 106/202 (52.48%), Query Frame = 0


Query: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 118
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 178
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 179 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMS 238
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A+ A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 239 KDKMTIGSRYVELFPSTPNEAR 256
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Chy2G027730 vs. ExPASy TrEMBL
Match: A0A0A0KJN7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 5.6e-147
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 264
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. ExPASy TrEMBL
Match: A0A1S4DTH1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485191 PE=4 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 7.3e-147
Identity = 261/263 (99.24%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 264
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. ExPASy TrEMBL
Match: A0A6J1BYF3 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005858 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 256/263 (97.34%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNI EFFGEFDL EDR+HIASRPDGKATGEAYVEFASAEEAK AMSKDKM IG
Sbjct: 181 LPFSVTKSNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 264
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. ExPASy TrEMBL
Match: A0A6J1EFC5 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433681 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 3.7e-143
Identity = 255/263 (96.96%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSV KS+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAK AMSKDKMTIG
Sbjct: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 264
           SRYVELFPST NEARRAESRSRQ
Sbjct: 241 SRYVELFPSTSNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. ExPASy TrEMBL
Match: A0A6J1IJJ3 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477672 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.4e-143
Identity = 255/263 (96.96%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYKVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVF CKRQDYYNAVAAEVNYEGIY+NDY+GSPPPRQKR SDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFSCKRQDYYNAVAAEVNYEGIYNNDYNGSPPPRQKRISDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 264
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. NCBI nr
Match: XP_004134826.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_011658072.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >KGN48994.1 hypothetical protein Csa_003171 [Cucumis sativus])

HSP 1 Score: 529 bits (1363), Expect = 1.44e-189
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 263
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. NCBI nr
Match: XP_008440908.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] >XP_016899253.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo])

HSP 1 Score: 529 bits (1362), Expect = 2.05e-189
Identity = 261/263 (99.24%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 263
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. NCBI nr
Match: XP_038882740.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida])

HSP 1 Score: 528 bits (1360), Expect = 4.13e-189
Identity = 261/263 (99.24%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 263
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. NCBI nr
Match: XP_022133202.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia] >XP_022133203.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia])

HSP 1 Score: 518 bits (1334), Expect = 3.80e-185
Identity = 256/263 (97.34%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNI EFFGEFDL EDR+HIASRPDGKATGEAYVEFASAEEAK AMSKDKM IG
Sbjct: 181 LPFSVTKSNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 263
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. NCBI nr
Match: XP_023544122.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544123.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516 bits (1330), Expect = 1.55e-184
Identity = 255/263 (96.96%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV
Sbjct: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNM
Sbjct: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
           GRRYVEVF CKRQDYYNAVAAEVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRG
Sbjct: 121 GRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDKMTIG 240
           LPFSVTKSNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFAS E+AK AMSKDKMTIG
Sbjct: 181 LPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 263
           SRYVELFPSTPNEARRAESRSRQ
Sbjct: 241 SRYVELFPSTPNEARRAESRSRQ 263

[Close]

BLAST of Chy2G027730 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-97
Identity = 180/267 (67.42%), Postives = 210/267 (78.65%), Query Frame = 0


Query: 1   MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
           MYG RGAM GSG    GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVV
Sbjct: 1   MYGSRGAMFGSG----GYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVV 60

Query: 61  RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
           RLRGLPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NM
Sbjct: 61  RLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNM 120

Query: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEIL 180
           GRRYVEVFRC +QDYYNAVAAE   EG Y+ +   SPPP    R KRFS+K+++EYTE+L
Sbjct: 121 GRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVL 180

Query: 181 KLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKDK 240
           K+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + EEA+ AM+KDK
Sbjct: 181 KMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDK 240

Query: 241 MTIGSRYVELFPSTPNEARRAESRSRQ 264
           M+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 MSIGSRYVELFPTTREEARRAEARSRQ 255

[Close]

BLAST of Chy2G027730 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-62
Identity = 131/288 (45.49%), Postives = 181/288 (62.85%), Query Frame = 0


Query: 10  GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGL 69
           G G   DG E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 70  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 129
           PF+C ++D+ +FF GLD+VDVL V++N +  GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 130 EVFRCKRQDYYNAVAAEVNYEGIY--------------------------DNDYHGSPPP 189
           EVFR  +Q+YY A+A EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 190 R---QKRFSD--KDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKA 249
           R   + R SD  K+ +E+T IL+LRGLPFS  K +I++FF +F+L+ED +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 250 TGEAYVEFASAEEAKGAMSKDKMTIGSRYVELFPSTPNEARRAESRSR 263
           TGEA+VEF +AE+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Chy2G027730 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.2 bits (539), Expect = 5.0e-55
Identity = 106/161 (65.84%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 107 VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP----RQK 166
           +QVE ALQRDR NMGRRYVEVFRC +QDYYNAVAAE   EG Y+ +   SPPP    R K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 60

Query: 167 RFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 226
           RFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF
Sbjct: 61  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 120

Query: 227 ASAEEAKGAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 264
            + EEA+ AM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 121 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158

[Close]

BLAST of Chy2G027730 vs. TAIR 10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-07
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 176 LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKD 235
           L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 236 KMTIGSRYVELFPSTPNEARRAESR 261
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

[Close]

BLAST of Chy2G027730 vs. TAIR 10
Match: AT4G36960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-07
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 176 LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKGAMSKD 235
           L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 236 KMTIGSRYVELFPSTPNEARRAESR 261
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

The following BLAST results are available for this feature:

BLAST of Chy2G027730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3US41	4.7e-26	35.58	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 ...	[more]
Q6NXG1	6.1e-26	35.58	Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 S...	[more]
B2RYD2	6.1e-26	35.58	Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 ...	[more]
Q5E9J1	1.0e-25	36.63	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]
P52597	1.4e-25	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]

BLAST of Chy2G027730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN7	5.6e-147	99.62	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV...	[more]
A0A1S4DTH1	7.3e-147	99.24	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1BYF3	1.3e-143	97.34	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1EFC5	3.7e-143	96.96	heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1IJJ3	6.4e-143	96.96	heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of Chy2G027730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134826.1	1.44e-189	99.62	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_0116...	[more]
XP_008440908.1	2.05e-189	99.24	PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] ...	[more]
XP_038882740.1	4.13e-189	99.24	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida]	[more]
XP_022133202.1	3.80e-185	97.34	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia] >XP_...	[more]
XP_023544122.1	1.55e-184	96.96	heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp....	[more]

BLAST of Chy2G027730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66010.1	1.1e-97	67.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20890.1	1.9e-62	45.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	5.0e-55	65.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.1	8.6e-07	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.2	8.6e-07	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 175..247 e-value: 5.9E-7 score: 39.1 coord: 59..128 e-value: 1.3E-5 score: 34.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 61..123 e-value: 1.7E-6 score: 27.7 coord: 178..244 e-value: 2.3E-7 score: 30.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 174..251 score: 9.865582
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 159..263 e-value: 2.4E-28 score: 100.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 56..141 e-value: 3.4E-23 score: 83.6
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 1..263
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..263
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 175..247 e-value: 1.62226E-27 score: 99.1687
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 52..137
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 173..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G027730.1	Chy2G027730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding