Chy2G027400 (gene) Cucumber (hystrix) v1

Overview
NameChy2G027400
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 2917430 .. 2918034 (+)
RNA-Seq ExpressionChy2G027400
SyntenyChy2G027400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAAGTGAACCAAAGATCTCACAATTCACAATCTTTAGAGGCGAAGGTGCTGTTTAAATACCAAAGGTCTCACACGGACTCACCCTTCTTTATTTCTCTGTCCTTCTCAATGGCCTGTGAGACTGACACAAAAGTCATTATCTTTTTCCTCGATTGGGAAAAGTAAGAAAGTGTGTGTCGGAATCTAAATACGACCCTTAAAATATGCAGCGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGGTTTGTTTCCAGATTTTTGCTTCCGTAATCTTTTTCAGTATTCTCCACTAATAAATATACACCACAAACATTAAATCTTGGTCGTCCAACTGGTCGTTGCCATCTACCCTTCACCATTTGATTTCGGGTTCTTTTTTGTTTTCTTCCCTTTCTTTCTCTTTTATTCCCAAACCCTGTGACCAGTTAATTGTGGAAAGCAAAACAGTGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATACCCATTCTCTTCGGCCTTGCTTGTTGGATCTTAAAGTCAGGAAATTTGA

mRNA sequence

ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAACGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGTTAATTGTGGAAAGCAAAACAGTGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATACCCATTCTCTTCGGCCTTGCTTGTTGGATCTTAAAGTCAGGAAATTTGA

Coding sequence (CDS)

ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAACGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGTTAATTGTGGAAAGCAAAACAGTGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATACCCATTCTCTTCGGCCTTGCTTGTTGGATCTTAAAGTCAGGAAATTTGA

Protein sequence

MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTVGIFLKSESAGKYPFSSALLVGS*SQEI*
Homology
[Close]
BLAST of Chy2G027400 vs. ExPASy TrEMBL
Match: A0A0A0KH52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510970 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTVGIFLKSESAGKYPFSS 60
          MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKT GIFLKSESAGK PFSS
Sbjct: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60

Query: 61 ALLVGS*SQEI 72
          ALLVGS SQEI
Sbjct: 61 ALLVGSQSQEI 71

[Close]
BLAST of Chy2G027400 vs. NCBI nr
Match: KGN49030.1 (hypothetical protein Csa_003307 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 1.53e-35
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTVGIFLKSESAGKYPFSS 60
          MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKT GIFLKSESAGK PFSS
Sbjct: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60

Query: 61 ALLVGS*SQEI 71
          ALLVGS SQEI
Sbjct: 61 ALLVGSQSQEI 71

The following BLAST results are available for this feature:
BLAST of Chy2G027400 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G027400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH521.1e-2595.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510970 PE=4 SV=1[more]
BLAST of Chy2G027400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49030.11.53e-3595.77hypothetical protein Csa_003307 [Cucumis sativus][more]
BLAST of Chy2G027400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G027400.1Chy2G027400.1mRNA