Chy2G026000 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G026000
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 2149890 .. 2153034 (-)
RNA-Seq Expression	Chy2G026000
Synteny	Chy2G026000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTTCCAGAACCGACTACATCGCCGCCGCCGCCGCCTACTCTCCCAGGGGTTCTGCCCGTCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTAGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACCTAGACTATACACGGCGGCCAGCGGTGGCTCTCACACTGAACCGCCCGGCCCGGCCCGACTCCCTCTTTTTTATTTTTTATGAGTTGATGGAAGAGAAACGGCATGGACACAGATTGGAGAGTCTCCGGAGCTCTTTTGGTGTCTTTTTGTATAAACAACTTTTCTTTTTTCTTTTGTGAAATTAATGGAAAGAATGGAGACTTCCTTCTCTATTTATCATTTTGTGCACTTAGTTTCTTATTCTTCTTTTTCAAGTATAATAAATTATGCAAATTAAACATCCCAATTACATTTATTATTTTTGTACTCAACTATAATATTAATAAATAAATTAGATGAGATCGAGGAAATTATGATGCTACAAATTAATAATAAATAACAAAAGAATCTACAAATATAGAAATAGTTGAGGAATTCTAAGTATTTTCATTGGCTATAATTTAAGATGGATAAGGTTTGTGATTGTGAGTCTCTTAAACTATTCATTTACATGACAAAATAATTTGGAAATGCACTTGAATATTTCCAAAGGATGATGTCTGTAAAAAAAATCTTTTATTTATCTTATAAATATGTTTTAGTTTCTTATAGAAAAACATATAGAAGAAGATCAAACTTATATATGAGCTCATTCTTTTTAAGATTACAGTAATATTCATCTTTTATTGAATTATATAACAAAATACTTTTTAGATTGATTATCGATTCTACCATAAATCGTCATAAACTAAAAAATGGGCTCAAACCTTTAAATTAGAAGGTTAAAGATTAACAATCTTCTTTTTTTCCTTTTAATTCATTGATGAGAACGTCATAAGCTAATTAGTTATGAGATATAATTAGATGATGGATCAACTACTAGTTTTCGGTAACCAGCTACGAACAACACACAACATTCAACACTGATGACTTTGACAGTTTATAAATGTTACAGAAAGAAAAAAAGATGGATAGAAAAGAGATATATATTGTTACATATGATAAATAATAAAGAAATAGAAATGGGTACATATGAAATTTAAAAAGGGGTACGGGAAAACGATGTCCCTAGCTGTACTGATAAAGATGATCCCACCCATTTAAAACCAAATCTATTTATTATATTTATGTCTATATTTTGATACAAAGATCTCAAATTTACTGAAAACAAAAGATCTCACACCAATACATTGAATCCAACATACATCTTTCAAATTTGCAGCCTCTCTCAGATTCAGTGTCTGGTTTTTTATGTCCACTGATATATAATCCATAATAAACTAAAATCATACACAATTATTTGCAACTTGCTAATCTTTCTTCTAATTATTGGCTTCAATTCTAAACTTTACTTAATATATAACACATCTTAATTATGTCGCCTTTCTCTGTACTTTGTCTTTTATTAATGCCAGTGAGGGTGACATGCATTTATTTAATTAATTAAAGTGATGTTTTACTTTTTTTATATCCCTTTACCTTATTTCACACTTGCTTTTACATTTTTATAAATCTTCTTCTTTTAATGTTTTAAATGAATAGTTACAAATGGGTTGGTTGTGCTTAATTATTTAGTTTGGGTTAATGCAACATGAGTGGGCTTCTCATGATTGCTCTTCTGTTTTCTTTTTTTCTGCTTTTACAAAAATGGGTTTGAGAGAAGTTGATGGATGAATTATTATAATTAATTCGGTTTTTTAATATTAGTTTAAAGAATAATTATATACGTGAACTCTCAATGTTTCCAAATCTGTGGGACAACTTCCATTAAAGAAAAAAGATTATGGAGCATTAATTGATAGTGATAAGATTTGGTTGAGGTCGTATCAAATTAAAGAAGAAGAAGACATGGTTAAGGTTAAATGAATCGGACGAGAAAGCCACCGGTAGTGGCGGGGCATCCTTTAAGTTTAGATTATGGTACCCCCATCATGATTTATGATTAATTAAAGCCTTTTCTTTTTCTAGTGGAAGCCATATGAGCACGTTTTTTTTCTTCTTCTCCTTTTTCTTTATTCCTACTACATTTCTCGTGTGATTAACAATTTCGTTCATGAGTGTCACTTTATTTCAAAACTCCAAATTGCCCTTCCCTTCTTGCTACAACTCTCTTGTTGGCCACCTCACTACTACTAGTCTACCTCCCACCCCATATCCAACTTTCAATTCTGACCTTTTCCCTTTTACTATTCAATTCAATTCAATTATTTATTTTCCTTCCTGCTCAAGCCAACATTTGATTAATATTATCTTTACAATATAATTATATATTTGAATTGATGGCTTTATGTCATATTACGTATTTGACTTCCATTATTTTGATAAAAATTAGAATTCTATTACAGTTGAGTTGAGTTTTATAGGAAGGGTACATACTTAGCTTGGTAGTTTATTTACTAAACGCTTACATTTGAATAATTCGTTGATGACGTAAGGAAAGAATAATTATTCAAAATTCAGCTGGCTGAATTTGACCTTATCTCTATGGAATTGGGAAATGACGTCACTGGCTCTACTAAAGAGAAGAGGTAAAATTTGTAATTGAGGACTGATTTTGATTTGAAAATTGACTAAGACAGCCGTGGGGTGAAAAGCTCTGATTGATATACAAAGCAACCGGGAAACGAAAACCAAGACGCCAGTTAGGCAGGGTCAAGATCGTCAACTTCTATTACGGCGTTTCCCTCATCTTAACCTTCTCATTTTATATATATATATACGAATTACCAACAAGCTCTAACCATAACTTTAACAATCATCATCATCTTCTTCATCTTCTTCTTCCTCTTCTTTCTCTCACTAAATCGGAAGCTTACATGGCGGGTACAAGGACCAACGCAATCAACCGTGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGACTGTGGTGGCCGAGGAAGGGAACGGGTTCAGTTAA

mRNA sequence

ATGGCCGCTTCCAGAACCGACTACATCGCCGCCGCCGCCGCCTACTCTCCCAGGGGTTCTGCCCGTCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGCTGGCTGAATTTGACCTTATCTCTATGGAATTGGGAAATGACGTCACTGGCTCTACTAAAGAGAAGAGCTTACATGGCGGGTACAAGGACCAACGCAATCAACCGTGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGACTGTGGTGGCCGAGGAAGGGAACGGGTTCAGTTAA

Coding sequence (CDS)

ATGGCCGCTTCCAGAACCGACTACATCGCCGCCGCCGCCGCCTACTCTCCCAGGGGTTCTGCCCGTCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGCTGGCTGAATTTGACCTTATCTCTATGGAATTGGGAAATGACGTCACTGGCTCTACTAAAGAGAAGAGCTTACATGGCGGGTACAAGGACCAACGCAATCAACCGTGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGACTGTGGTGGCCGAGGAAGGGAACGGGTTCAGTTAA

Protein sequence

MAASRTDYIAAAAAYSPRGSARPFPKRGQVKLGIMLAEFDLISMELGNDVTGSTKEKSLHGGYKDQRNQPWKFVEEIFGPSDSKTGSSEIGNHSGYCSLSDFDILSRQPEMTVVAEEGNGFS*

Homology

[Close]

BLAST of Chy2G026000 vs. ExPASy TrEMBL
Match: A0A0A0KN78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MAASRTDYIAAAAAYSPRGSARPFPKRGQVKLGIML 37
          MAASRT YI  AAAYSPR SARPFPKRGQVKLGIM+
Sbjct: 1  MAASRTHYI-TAAAYSPRASARPFPKRGQVKLGIMV 35

[Close]

BLAST of Chy2G026000 vs. NCBI nr
Match: KAE8647683.1 (hypothetical protein Csa_023550, partial [Cucumis sativus])

HSP 1 Score: 129 bits (324), Expect = 1.36e-36
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 61  GGYKDQRNQPWKFVEEIFGPSDSKTGSSEIGNHSGYCSLSDFDILSRQPEMTVVAEEGNG 120
           GGY DQRNQPWKFVEE+FGPSDSKTGSSEIGNHSGYCSLSDFDILSRQPEMTVVAEE NG
Sbjct: 1   GGYTDQRNQPWKFVEEMFGPSDSKTGSSEIGNHSGYCSLSDFDILSRQPEMTVVAEEENG 60

Query: 121 FS 122
           FS
Sbjct: 61  FS 62

[Close]

BLAST of Chy2G026000 vs. NCBI nr
Match: KGN49191.1 (hypothetical protein Csa_004352 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.79e-08
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MAASRTDYIAAAAAYSPRGSARPFPKRGQVKLGIML 36
          MAASRT YI AAA YSPR SARPFPKRGQVKLGIM+
Sbjct: 1  MAASRTHYITAAA-YSPRASARPFPKRGQVKLGIMV 35

[Close]

BLAST of Chy2G026000 vs. NCBI nr
Match: KAA0052718.1 (hypothetical protein E6C27_scaffold120G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 8.86e-06
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1  MAASRTDYIAAAAAYSPRGSARPFPKRGQVKLGIML 36
          MA  R+DYI  AA YSPR SARP PKRGQVKLGIM+
Sbjct: 30 MAGHRSDYITGAA-YSPRASARPIPKRGQVKLGIMV 64

The following BLAST results are available for this feature:

BLAST of Chy2G026000 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G026000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN78	2.2e-05	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1	[more]

BLAST of Chy2G026000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647683.1	1.36e-36	95.16	hypothetical protein Csa_023550, partial [Cucumis sativus]	[more]
KGN49191.1	1.79e-08	86.11	hypothetical protein Csa_004352 [Cucumis sativus]	[more]
KAA0052718.1	8.86e-06	75.00	hypothetical protein E6C27_scaffold120G003310 [Cucumis melo var. makuwa]	[more]

BLAST of Chy2G026000 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G026000.1	Chy2G026000.1	mRNA