Chy2G024830 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G024830
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 1440259 .. 1440684 (+)
RNA-Seq Expression	Chy2G024830
Synteny	Chy2G024830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGCCGGGGCTTGGAACTGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGGAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGCCATGGTATTGGTAGGTAGGAGTCTGGCGGCGAGTGAAGTGGGAGCAGAGAATGCGAATAGAAGAGCCAAAATGAGAGAGCAGCAAGTGATGAATGTGAAGCGAGGCATGGAGAGATTCAAAATACTTAGAGATTTTAGAGTTAAAATCGTGGTAACTTTTTGGTTTGAAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTTGAGAAAGGCATGGTGTGGGGAGGAAGCAAAGAGTCAACATCAAATGGGTTTGA

mRNA sequence

ATGGCCAACGCCGGGGCTTGGAACTGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGGAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGCCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTTGAGAAAGGCATGGTGTGGGGAGGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Coding sequence (CDS)

ATGGCCAACGCCGGGGCTTGGAACTGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGGAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGCCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTTGAGAAAGGCATGGTGTGGGGAGGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Protein sequence

MANAGAWN*LDKVASSEVVVEEHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKGRGGVIYSIKLEG*ERHGVGRKQRVNIKWV*

Homology

[Close]

BLAST of Chy2G024830 vs. ExPASy TrEMBL
Match: A0A0A0KIB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519740 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MANAGAWN*LDKVASSEVVVEEHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MA+AGAWN LDKVASSEVVVE+HGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEG*ERHGVGRKQRVNIKWV 90
          RGGVIYSIKLEG ERHGVG+KQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

[Close]

BLAST of Chy2G024830 vs. ExPASy TrEMBL
Match: A0A5A7UEL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008360 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.3e-18
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MANAGAWN*LDKVASSEVVVEEHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 53
          MA+AGAWN LDKVASSEVVVE+HGMNFLAGRGSGDGALGKGGEKEGVRRRHG
Sbjct: 21 MADAGAWNRLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 72

[Close]

BLAST of Chy2G024830 vs. NCBI nr
Match: KGN49323.1 (hypothetical protein Csa_002945 [Cucumis sativus])

HSP 1 Score: 170 bits (431), Expect = 3.79e-53
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MANAGAWN*LDKVASSEVVVEEHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MA+AGAWN LDKVASSEVVVE+HGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEG*ERHGVGRKQRVNIKWV 89
          RGGVIYSIKLEG ERHGVG+KQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

[Close]

BLAST of Chy2G024830 vs. NCBI nr
Match: KAA0052606.1 (hypothetical protein E6C27_scaffold120G002140 [Cucumis melo var. makuwa] >TYK13221.1 hypothetical protein E5676_scaffold255G008360 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.16e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MANAGAWN*LDKVASSEVVVEEHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 52
          MA+AGAWN LDKVASSEVVVE+HGMNFLAGRGSGDGALGKGGEKEGVRRRHG
Sbjct: 21 MADAGAWNRLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 72

The following BLAST results are available for this feature:

BLAST of Chy2G024830 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G024830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB1	1.3e-39	94.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519740 PE=4 SV=1	[more]
A0A5A7UEL8	8.3e-18	94.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy2G024830 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49323.1	3.79e-53	94.38	hypothetical protein Csa_002945 [Cucumis sativus]	[more]
KAA0052606.1	1.16e-24	94.23	hypothetical protein E6C27_scaffold120G002140 [Cucumis melo var. makuwa] >TYK132...	[more]

BLAST of Chy2G024830 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G024830.1	Chy2G024830.1	mRNA