Chy2G024270 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G024270
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Agamous-like MADS-box protein AGL62
Location	chrH02: 1150363 .. 1151352 (-)
RNA-Seq Expression	Chy2G024270
Synteny	Chy2G024270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCTCCGCCCCAACCGCCCCCGTCGCCGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAGAAGATCGTAAACGAAGACGATCGGTTAATTACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTTGGAGTTGTTGTGTTTTCGCCTGCAGGAAAGCCGTTCTCGTTTGCACATCCATGCATCGAAACCATCGCAAACAAATTCCTGAATGGCAACAACAAGAACAACAAGGGAAACAACAATGATAACAATAACAACGGCGATAGTAGCAGCAGCAACAACAATAACAACAACAACAACAACAACAACAACGCAGCGCACCCGCTCGTAGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAGCAACACAATCAACTTCTAAGCCAACTAGATGCAGAGAAAGAGAAAGGAAAAGCACTTGAGAAACTAAAAAGGGTAAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTACAGAAGAATTGGGAATAGAGGAATTGCAAGAAGTGGATGCATCATTTGGAGAAATATATTCAAATGTGTGTCATCAATTGAAACAAAGAGGAGTTATTGGATGTTGTTCTTATAATAATTACAACAACAATATGAATAATTCCTCTATGGGATTTCCAATAACTAATGATCAATTAGGGGAAGAAACAATTCCTTTTAACATTTTGGCAGGAAACGTTCCTCCTCCTCTTTTTGCTCTTCCTCCCCCACCTCCTTATCTTCCTCCTCCTCCTCAATTTGATTATGGAGAACAACAACAACATCCTCATCCTCCTCCTCATCCTCATCCATGAAGTGAAAACGGGAAGGATCACCATCAAATTTGTCCAAGTCTTCGTGTTTGGGTTTTTATTTCATGTATTAATAATAATGTTGTGTTTTCTTAATTGTGTGTTTGTGTCTTTGATCAGGTCTTCTAG

mRNA sequence

ATGGACTCCTCCGCCCCAACCGCCCCCGTCGCCGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAGAAGATCGTAAACGAAGACGATCGGTTAATTACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTTGGAGTTGTTGTGTTTTCGCCTGCAGGAAAGCCGTTCTCGTTTGCACATCCATGCATCGAAACCATCGCAAACAAATTCCTGAATGGCAACAACAAGAACAACAAGGGAAACAACAATGATAACAATAACAACGGCGATAGTAGCAGCAGCAACAACAATAACAACAACAACAACAACAACAACAACGCAGCGCACCCGCTCGTAGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAGCAACACAATCAACTTCTAAGCCAACTAGATGCAGAGAAAGAGAAAGGAAAAGCACTTGAGAAACTAAAAAGGGTAAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTACAGAAGAATTGGGAATAGAGGAATTGCAAGAAGTGGATGCATCATTTGGAGAAATATATTCAAATGTCTTCTAG

Coding sequence (CDS)

ATGGACTCCTCCGCCCCAACCGCCCCCGTCGCCGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAGAAGATCGTAAACGAAGACGATCGGTTAATTACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTTGGAGTTGTTGTGTTTTCGCCTGCAGGAAAGCCGTTCTCGTTTGCACATCCATGCATCGAAACCATCGCAAACAAATTCCTGAATGGCAACAACAAGAACAACAAGGGAAACAACAATGATAACAATAACAACGGCGATAGTAGCAGCAGCAACAACAATAACAACAACAACAACAACAACAACAACGCAGCGCACCCGCTCGTAGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAGCAACACAATCAACTTCTAAGCCAACTAGATGCAGAGAAAGAGAAAGGAAAAGCACTTGAGAAACTAAAAAGGGTAAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTACAGAAGAATTGGGAATAGAGGAATTGCAAGAAGTGGATGCATCATTTGGAGAAATATATTCAAATGTCTTCTAG

Protein sequence

MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEELQEVDASFGEIYSNVF*

Homology

[Close]

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-26
Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           K++KGRQKIEM K+ NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FSF
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
            HP ++++ ++F+N N      +NN                           L E  R  
Sbjct: 63  GHPNVDSVIDRFINNNPLPPHQHNN-------------------------MQLRETRRNS 122

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEELQ 188
            + +LN    Q+LSQL+ EK+K   L+K++        WWE P EEL + +L+
Sbjct: 123 IVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWWEDPVEELALSQLE 150

[Close]

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-25
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 0


Query: 14  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 73
           KK++ GRQKI M KI  E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KPFS
Sbjct: 58  KKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFS 117

Query: 74  FAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRR 133
           F HP +E++ ++++   ++NN          G  ++S                       
Sbjct: 118 FGHPSVESVLDRYV---SRNNMSLAQSQQLQGSPAAS----------------------- 177

Query: 134 VRINELNQQHNQLLSQLDAEKEKGKALEKLKR--VRGNGRGWWETPTEELGIEELQEVDA 193
               ELN Q   +LS+++ EK+KG+A+E++++  VR +   WWE P EE+ + +LQE+  
Sbjct: 178 ---CELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKY 217

Query: 194 SFGEIYSNV 201
           +  E+   V
Sbjct: 238 ALEELRKTV 217

[Close]

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 62/171 (36.26%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 19  GRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPC 78
           GR+KI+M+ + + + R +TFSKRR+G++KKASELATLC AE+G+VVFSP GKPFS+  P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 79  IETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRVRINE 138
           ++++A +F+            D++++GD   S N                    R ++  
Sbjct: 62  LDSVAERFM---------REYDDSDSGDEEKSGN-------------------YRPKLKR 121

Query: 139 LNQQHNQLLSQLDAEKEKG-KALEKLKRVRGNGRGWWETPTEELGIEELQE 189
           L+++ + L  +++AEKE+G K+ EKL+     G   ++   E L ++EL E
Sbjct: 122 LSERLDLLNQEVEAEKERGEKSQEKLESA---GDERFKESIETLTLDELNE 141

[Close]

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-15
Identity = 51/171 (29.82%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           K+T GR+K+E+ K+  E +  +TFSKR++G++KKASE  TLC A++ ++VFSPAGK FSF
Sbjct: 3   KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSF 62

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
            HP ++ + + F                  G     NN N            L E++ ++
Sbjct: 63  GHPNVDVLLDHF-----------------RGCVVGHNNTN------------LDESYTKL 122

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEE 186
            +  LN+ + ++ ++++ E++  ++  + +R   N   WW     EL + +
Sbjct: 123 HVQMLNKSYTEVKAEVEKEQKNKQSRAQNERENENAEEWWSKSPLELNLSQ 144

[Close]

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-15
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           ++  GR+KIE+ K+ NE +  +TFSKRRSG++KK SEL TLC AE+ ++VFSP+GK +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
            HP +    NK L                  D S      +NN N         E+  ++
Sbjct: 63  GHPNV----NKLL------------------DHSLGRVIRHNNTN-------FAESRTKL 122

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEE 186
           RI  LN+   +++++ + E+E  +++ + +R   +   WW     EL + +
Sbjct: 123 RIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTELNLAQ 144

[Close]

BLAST of Chy2G024270 vs. ExPASy TrEMBL
Match: A0A0A0KNT7 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.1e-94
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSSAP APVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSAPNAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNN--NNN 120
           GVVVFSPAGKPFSFAHPCIETIANKFLNG NKNNKGNN+DNNNNGDSSSSNNNNN  NNN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNG-NKNNKGNNDDNNNNGDSSSSNNNNNNSNNN 120

Query: 121 NNNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180
           NN+NAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT
Sbjct: 121 NNSNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180

Query: 181 EELGIEELQEVDASFGEIYSNV 201
           EELGIEELQEVDASFGEIYSNV
Sbjct: 181 EELGIEELQEVDASFGEIYSNV 201

[Close]

BLAST of Chy2G024270 vs. ExPASy TrEMBL
Match: A0A5A7UFR8 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008890 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.5e-87
Identity = 185/201 (92.04%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSS P APVA NKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSTPIAPVASNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNN-- 120
           GVVVFSPAGKPFSFAHPCIETIANKFLN  NK NKGN +DNNNN DSSSS+NNN+NNN  
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNDKNK-NKGNKDDNNNNDDSSSSSNNNSNNNIS 120

Query: 121 NNNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180
            NNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLK+VRGNGRGWWETPT
Sbjct: 121 INNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPT 180

Query: 181 EELGIEELQEVDASFGEIYSN 200
           EELGI+ELQEVDASFGEIYSN
Sbjct: 181 EELGIDELQEVDASFGEIYSN 200

[Close]

BLAST of Chy2G024270 vs. ExPASy TrEMBL
Match: A0A6J1EJ54 (agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC111433790 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 142/187 (75.94%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 52  KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 111

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
           AHPCIE++ANKFL+ N +      NDN                       HPLVEAHRR+
Sbjct: 112 AHPCIESVANKFLDENPQ-----PNDN----------------------THPLVEAHRRL 171

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDASF 194
           RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEELGIEELQ+VD S 
Sbjct: 172 RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSL 211

Query: 195 GEIYSNV 201
           GE+Y NV
Sbjct: 232 GELYQNV 211

[Close]

BLAST of Chy2G024270 vs. ExPASy TrEMBL
Match: A0A6J1KP08 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111496989 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.1e-65
Identity = 141/187 (75.40%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
           AHPCIE++ANKFL+ N +      NDN                       HPLVEAHRR+
Sbjct: 69  AHPCIESVANKFLDENPQ-----PNDN----------------------THPLVEAHRRL 128

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDASF 194
           RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEEL IEELQ+VD S 
Sbjct: 129 RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELAIEELQQVDGSL 168

Query: 195 GEIYSNV 201
           GE+Y NV
Sbjct: 189 GELYQNV 168

[Close]

BLAST of Chy2G024270 vs. ExPASy TrEMBL
Match: A0A6J1CYR8 (agamous-like MADS-box protein AGL61 OS=Momordica charantia OX=3673 GN=LOC111015822 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.6e-64
Identity = 138/189 (73.02%), Postives = 153/189 (80.95%), Query Frame = 0


Query: 14  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 73
           KKQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS
Sbjct: 4   KKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 63

Query: 74  FAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRR 133
           FAHP IE++ANKF+N                 ++   N+N           HPLVEAHRR
Sbjct: 64  FAHPSIESVANKFIN-----------------ETPQPNDN----------THPLVEAHRR 123

Query: 134 VRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG--NGRGWWETPTEELGIEELQEVDA 193
           VRINELNQQHNQLLSQL+AEKEKGKALEK+K+VRG  NGRGWWETPTEE+G+EELQ+VDA
Sbjct: 124 VRINELNQQHNQLLSQLEAEKEKGKALEKMKKVRGNSNGRGWWETPTEEMGMEELQQVDA 165

Query: 194 SFGEIYSNV 201
           S G++Y+NV
Sbjct: 184 SLGDLYTNV 165

[Close]

BLAST of Chy2G024270 vs. NCBI nr
Match: XP_011658286.1 (agamous-like MADS-box protein AGL29 [Cucumis sativus])

HSP 1 Score: 353 bits (907), Expect = 9.17e-121
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSSAP APVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSAPNAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNN 120
           GVVVFSPAGKPFSFAHPCIETIANKFLNGN KNNKGNN+DNNNNGDSSSSNNNNNN+NNN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGN-KNNKGNNDDNNNNGDSSSSNNNNNNSNNN 120

Query: 121 NN--AAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180
           NN  AAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT
Sbjct: 121 NNSNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180

Query: 181 EELGIEELQEVDASFGEIYSNV 200
           EELGIEELQEVDASFGEIYSNV
Sbjct: 181 EELGIEELQEVDASFGEIYSNV 201

[Close]

BLAST of Chy2G024270 vs. NCBI nr
Match: KAA0052555.1 (agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK13271.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (847), Expect = 7.75e-113
Identity = 185/201 (92.04%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSS P APVA NKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSTPIAPVASNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNN- 120
           GVVVFSPAGKPFSFAHPCIETIANKFLN  NKN KGN +DNNNN DSSSS+NNN+NNN  
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNDKNKN-KGNKDDNNNNDDSSSSSNNNSNNNIS 120

Query: 121 -NNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPT 180
            NNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLK+VRGNGRGWWETPT
Sbjct: 121 INNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPT 180

Query: 181 EELGIEELQEVDASFGEIYSN 199
           EELGI+ELQEVDASFGEIYSN
Sbjct: 181 EELGIDELQEVDASFGEIYSN 200

[Close]

BLAST of Chy2G024270 vs. NCBI nr
Match: XP_038881522.1 (agamous-like MADS-box protein AGL61 [Benincasa hispida])

HSP 1 Score: 313 bits (802), Expect = 5.34e-105
Identity = 169/201 (84.08%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDS+AP A  AG KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSAAPNAATAGKKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNND-NNNNGDSSSSNNNNNNNNN 120
           GVVVFSPAGKPFSFAHPCIE++ANKFLN +NKNNKGNNND ++NN D +++N+N+N +NN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIESVANKFLNNDNKNNKGNNNDKDDNNNDDNNNNDNDNPDNN 120

Query: 121 NNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTE 180
           N NA HPLVEAHRRVRINELNQQHNQ+LSQLD EKE+GK LE LK+VRGNGRGWWETPTE
Sbjct: 121 NINATHPLVEAHRRVRINELNQQHNQILSQLDGEKERGKTLENLKKVRGNGRGWWETPTE 180

Query: 181 ELGIEELQEVDASFGEIYSNV 200
           ELGIEEL+EVDASFGE+Y NV
Sbjct: 181 ELGIEELEEVDASFGELYQNV 201

[Close]

BLAST of Chy2G024270 vs. NCBI nr
Match: KAE8647745.1 (hypothetical protein Csa_003519 [Cucumis sativus])

HSP 1 Score: 294 bits (752), Expect = 6.80e-99
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MDSSAPTAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSSAP APVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSAPNAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNN 120
           GVVVFSPAGKPFSFAHPCIETIANKFLNGN KNNKGNN+DNNNNGDSSSSNNNNNN+NNN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGN-KNNKGNNDDNNNNGDSSSSNNNNNNSNNN 120

Query: 121 NN--AAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRG 172
           NN  AAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRG
Sbjct: 121 NNSNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRG 173

[Close]

BLAST of Chy2G024270 vs. NCBI nr
Match: KAG6594479.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026476.1 Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (661), Expect = 5.11e-84
Identity = 140/187 (74.87%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
           AHPCIE++ANKFL+ N + N                              HPLVEAHRR+
Sbjct: 69  AHPCIESVANKFLDENPQPNDN---------------------------THPLVEAHRRL 128

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGN-GRGWWETPTEELGIEELQEVDASF 194
           RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRGN GRGWWE+PTEELGIEELQ+VD S 
Sbjct: 129 RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSL 168

Query: 195 GEIYSNV 200
           GE+Y NV
Sbjct: 189 GELYQNV 168

[Close]

BLAST of Chy2G024270 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-27
Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           K++KGRQKIEM K+ NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FSF
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
            HP ++++ ++F+N N      +NN                           L E  R  
Sbjct: 63  GHPNVDSVIDRFINNNPLPPHQHNN-------------------------MQLRETRRNS 122

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEELQ 188
            + +LN    Q+LSQL+ EK+K   L+K++        WWE P EEL + +L+
Sbjct: 123 IVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWWEDPVEELALSQLE 150

[Close]

BLAST of Chy2G024270 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-26
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 0


Query: 14  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 73
           KK++ GRQKI M KI  E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KPFS
Sbjct: 58  KKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFS 117

Query: 74  FAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRR 133
           F HP +E++ ++++   ++NN          G  ++S                       
Sbjct: 118 FGHPSVESVLDRYV---SRNNMSLAQSQQLQGSPAAS----------------------- 177

Query: 134 VRINELNQQHNQLLSQLDAEKEKGKALEKLKR--VRGNGRGWWETPTEELGIEELQEVDA 193
               ELN Q   +LS+++ EK+KG+A+E++++  VR +   WWE P EE+ + +LQE+  
Sbjct: 178 ---CELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKY 217

Query: 194 SFGEIYSNV 201
           +  E+   V
Sbjct: 238 ALEELRKTV 217

[Close]

BLAST of Chy2G024270 vs. TAIR 10
Match: AT3G04100.1 (AGAMOUS-like 57 )

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21
Identity = 61/186 (32.80%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           ++TKG+QKIEMKK+ N  DR+ITFSKR++GI+KK +EL  +C  EV  ++FS   KP++F
Sbjct: 10  RKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTF 69

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
           AHP ++ +A++  N + +     ++                          PLVEA+++ 
Sbjct: 70  AHPSMKKVADRLKNPSRQEPLERDD------------------------TRPLVEAYKKR 129

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEELQEVDASFG 194
           R+++L ++   L  +L  + EK K L++ +  +   + WW  P+E L  +ELQ+   +  
Sbjct: 130 RLHDLVKKMEALEEELAMDLEKLKLLKESRNEKKLDKMWWNFPSEGLSAKELQQRYQAML 171

Query: 195 EIYSNV 201
           E+  N+
Sbjct: 190 ELRDNL 171

[Close]

BLAST of Chy2G024270 vs. TAIR 10
Match: AT1G28460.1 (AGAMOUS-like 59 )

HSP 1 Score: 94.7 bits (234), Expect = 8.8e-20
Identity = 63/190 (33.16%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 13  NKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPF 72
           N K+TKG+QKI +KKI  ++ R +TFSKR +GIY K SEL+ LCG EV  + +S +GKP+
Sbjct: 2   NPKKTKGKQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPY 61

Query: 73  SFAHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHR 132
           +F  P  + +A +FL                NGD+SSS++++            ++ AH+
Sbjct: 62  TFGSPSFQAVAERFL----------------NGDASSSSSSS-----------LVMNAHK 121

Query: 133 RVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVR-GNGRGWWET-PTEELGIEELQEVD 192
           + +I EL +++N+L+ +L  ++ K K    L   R  N   WW+  P +    E+ +++ 
Sbjct: 122 QAKIQELCKKYNRLVEELKVDEVKVKKAAALAETRVVNKDVWWKVDPNDVKDHEKAKKMM 164

Query: 193 ASFGEIYSNV 201
             + E+Y  +
Sbjct: 182 EKYQELYDKL 164

[Close]

BLAST of Chy2G024270 vs. TAIR 10
Match: AT4G36590.1 (MADS-box transcription factor family protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 0


Query: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74
           + TKGRQKIEMKK+ NE +  +TFSKRR G++KKASEL TL GAE+ ++VFSP GK FSF
Sbjct: 3   RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSF 62

Query: 75  AHPCIETIANKFLNGNNKNNKGNNNDNNNNGDSSSSNNNNNNNNNNNNAAHPLVEAHRRV 134
            HP ++ + ++F              +N N +S+  ++ NNN          LVE     
Sbjct: 63  GHPSVQELIHRF--------------SNPNHNSAIVHHQNNNLQ--------LVETRPDR 122

Query: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTEELGIEELQEVDASFG 194
            I  LN    ++L+  + EK+K   L+ LK  R     W+E   ++L + E  ++ ++  
Sbjct: 123 NIQYLNNILTEVLANQEKEKQKRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQ 162

Query: 195 EI 197
           ++
Sbjct: 183 DV 162

The following BLAST results are available for this feature:

BLAST of Chy2G024270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	8.0e-26	41.62	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	4.0e-25	39.15	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
O64703	1.7e-15	36.26	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]
O80807	4.9e-15	29.82	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
Q9LMM8	6.4e-15	32.75	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]

BLAST of Chy2G024270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT7	7.1e-94	97.03	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE...	[more]
A0A5A7UFR8	8.5e-87	92.04	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1EJ54	1.8e-65	75.94	agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC11143379...	[more]
A0A6J1KP08	9.1e-65	75.40	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111496989 ...	[more]
A0A6J1CYR8	2.6e-64	73.02	agamous-like MADS-box protein AGL61 OS=Momordica charantia OX=3673 GN=LOC1110158...	[more]

BLAST of Chy2G024270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658286.1	9.17e-121	97.03	agamous-like MADS-box protein AGL29 [Cucumis sativus]	[more]
KAA0052555.1	7.75e-113	92.04	agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK13271.1 agamo...	[more]
XP_038881522.1	5.34e-105	84.08	agamous-like MADS-box protein AGL61 [Benincasa hispida]	[more]
KAE8647745.1	6.80e-99	96.55	hypothetical protein Csa_003519 [Cucumis sativus]	[more]
KAG6594479.1	5.11e-84	74.87	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Chy2G024270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	5.7e-27	41.62	AGAMOUS-like 62	[more]
AT2G24840.1	2.8e-26	39.15	AGAMOUS-like 61	[more]
AT3G04100.1	1.2e-21	32.80	AGAMOUS-like 57	[more]
AT1G28460.1	8.8e-20	33.16	AGAMOUS-like 59	[more]
AT4G36590.1	3.3e-19	36.81	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..156
None	No IPR available	GENE3D	6.10.140.920		coord: 122..200 e-value: 1.6E-5 score: 26.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11945:SF648	BOX PROTEIN, PUTATIVE-RELATED	coord: 17..200
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 17..200
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 40..55 score: 61.67 coord: 20..40 score: 47.34 coord: 55..76 score: 43.8
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 18..77 e-value: 6.3E-29 score: 112.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 27..74 e-value: 2.0E-22 score: 78.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 18..78 score: 24.305532
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 30..102 e-value: 5.1E-24 score: 85.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 19..97
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 19..87 e-value: 8.293E-32 score: 108.409

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G024270.1	Chy2G024270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding