Chy2G023570 (gene) Cucumber (hystrix) v1

Overview
NameChy2G023570
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 574885 .. 575866 (-)
RNA-Seq ExpressionChy2G023570
SyntenyChy2G023570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATTCATATCCATTCCATTCCACTTCTCTCAAAGTTACAAACCGCCCCCTTCTCCCACCCCCTAACGAAAAAGATATTAAAAAAAGGAGGAGGGTGGAAGAAGAGAGTTCTGCAAATTTCAATCATCCACATCAACAGGGTATTGAAGATTCAGATTTTTTTCCTGCCCAATCCCCTTTTTTCCTTTTTCCATTTCTCATCACCGGTTTTCTTCAATCATCGATCTCACTGGGTATTTATCATTTTCTACTTTAATCATTTATTATTGACTTTATTCTTCAATCATTGGGAATAATCTCTAATAATTTTCGTTTCCATTTCCCGTTTTCTTTCTGGGTTTTATTTTTAATTGTTTTTTTTTTTTTCGAATTTTGTTAATCGTATTGATGTTGATTGAGCGTATTTTCTGATTATGGATTCCTTATATACAGGGACCTTCTTCCTGTTAGCGATTCATTGTTATTGTAAGCTTTTGAGCTGATTTGGATGTATCGACCACATTTAATGTTTTGAATGTTGAGAGGATATAATTTTCTGGGGCTTTTCCCATCTTGTGAATTCTGTTTCCATTTCGCCCGATGGAAGAGTCCCAAAGTTTTGCTTCTATTAGAGCTGGAGGAAACAGGAAAGAAAAAAAAGATAAATAAATCTCAGGTTAATTTTGGTTGCTAATTTTTCTCGTTTTTGGAATTATTGCATCTGAGGTTTTGAAAAGAAAAAACTCTTCCAATTTCATTTTTCTTGGACTCAGTGGTTTTTGGCATGTAATCCTTGAGATGAAGAATTTGGGTGTCCTTTTGCTGCTGATGCCATTATTTAACTTTATTCTACTATTGTTATTTGTTCATTATAGGCGTTAGTGTAAATTTATATCTATGCTGATTCAGAGTATAAAGGGGTCTTTTTAGAATTGTGTGTGTTTGTTTGTTGGGTTGAATTATTCAAGCTGCTTTTGTCGAAACATAGGATTTGTTGGATGA

mRNA sequence

ATAATTCATATCCATTCCATTCCACTTCTCTCAAAGTTACAAACCGCCCCCTTCTCCCACCCCCTAACGAAAAAGATATTAAAAAAAGGAGGAGGGTGGAAGAAGAGAGTTCTGCAAATTTCAATCATCCACATCAACAGGGTATTGAAGATTCAGATTTTTTTCCTGCCCAATCCCCTTTTTTCCTTTTTCCATTTCTCATCACCGGTTTTCTTCAATCATCGATCTCACTGGGATTTGTTGGATGA

Coding sequence (CDS)

ATAATTCATATCCATTCCATTCCACTTCTCTCAAAGTTACAAACCGCCCCCTTCTCCCACCCCCTAACGAAAAAGATATTAAAAAAAGGAGGAGGGTGGAAGAAGAGAGTTCTGCAAATTTCAATCATCCACATCAACAGGGTATTGAAGATTCAGATTTTTTTCCTGCCCAATCCCCTTTTTTCCTTTTTCCATTTCTCATCACCGGTTTTCTTCAATCATCGATCTCACTGGGATTTGTTGGATGA

Protein sequence

IIHIHSIPLLSKLQTAPFSHPLTKKILKKGGGWKKRVLQISIIHINRVLKIQIFFLPNPLFSFFHFSSPVFFNHRSHWDLLDX
Homology
[Close]
BLAST of Chy2G023570 vs. ExPASy TrEMBL
Match: A0A0A0KIA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525460 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.6e-18
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 1  IIHIHSIPLLSKLQTAPFSHPLTKKILKK-GGGWKKRVLQISIIHINRVLKIQIFFLPNP 60
          +IHIHSIPL SKLQTAPFS PLTKKILKK GGGWKKRVLQISIIHIN VLKIQIF   +P
Sbjct: 1  MIHIHSIPLFSKLQTAPFSLPLTKKILKKGGGGWKKRVLQISIIHINGVLKIQIFPAQSP 60

Query: 61 LFSF 64
           F F
Sbjct: 61 FFLF 64

[Close]
BLAST of Chy2G023570 vs. NCBI nr
Match: KGN49460.1 (hypothetical protein Csa_003448 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 1.32e-25
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 1  IIHIHSIPLLSKLQTAPFSHPLTKKILKKGGG-WKKRVLQISIIHINRVLKIQIFFLPNP 60
          +IHIHSIPL SKLQTAPFS PLTKKILKKGGG WKKRVLQISIIHIN VLKIQIF   +P
Sbjct: 1  MIHIHSIPLFSKLQTAPFSLPLTKKILKKGGGGWKKRVLQISIIHINGVLKIQIFPAQSP 60

Query: 61 LFSF 63
           F F
Sbjct: 61 FFLF 64

The following BLAST results are available for this feature:
BLAST of Chy2G023570 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G023570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIA17.6e-1882.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525460 PE=4 SV=1[more]
BLAST of Chy2G023570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49460.11.32e-2582.81hypothetical protein Csa_003448 [Cucumis sativus][more]
BLAST of Chy2G023570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G023570.1Chy2G023570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane