Chy2G023550 (gene) Cucumber (hystrix) v1

Overview
NameChy2G023550
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 570180 .. 571089 (+)
RNA-Seq ExpressionChy2G023550
SyntenyChy2G023550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCGATCAAATCCTCGGCCGCCATCGTCGCCTTCTTCTCACTGATCGCATCGATCGCGGCAGTGTCGGAGATACGCCCGTCAGAGCATGGGTTGGAGTTTCAGAGCCCTCCACCGGCTGGAGACAAATCGTCACCGGAGATGCGATCGTTTTTCGGAGGAATAACGTCGCCGACACCGGAAGTGGCATTGCCGATACCCAAGACGTTGAATTCGAGTGAATCGCCGGGATGGTGGAACCACCGTGACGGAGGAAACAAACGACTGAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGTTATTCTACATTTTTAAGGTCAAAAATAAAAGATCGATGCCGTTATCACCAAACAATAATCACAAATAAAAGTATGATCATCATAATCATAATTGATGATAACTTTACACCAAGAATTTAGCTGTCATGAAATAGCCATATTTTTCTTAGTTTCAATTTTTTCTTACCGTTTGAGAATTCACATTTGATTTGATTATCTAATTAGACACAATTTTATTGCCATTAATTGTTTGTTTGGGAATCTATAAATCTCATGTATCAATTAATTTGTTTATATATTAATAAAAAGAAAAAAGAAAAAAACAGGGAGAAGTTTGTTTGGAGTTTGGAGTTTGCCTCTTCTATAAGTAAATAATATTCTCTTCTTGATTTTTCATGTAAGTATGATAAGCTGTGGAGACTGGAGATTTTGAATAAGAAATCTGATCAGATTTGAAATTAAAATAATTAGAGTCACCATACCCAATTATTAATGGAATTGTCATGAGGTATTATTATATTTGGTTGTTTGTTGGTTTCTTTTTCTTTTTCAAAAGATATGAATGATGAAGCTTTTGGTGTTAACTTTTGA

mRNA sequence

ATGATTCCGATCAAATCCTCGGCCGCCATCGTCGCCTTCTTCTCACTGATCGCATCGATCGCGGCAGTGTCGGAGATACGCCCGTCAGAGCATGGGTTGGAGTTTCAGAGCCCTCCACCGGCTGGAGACAAATCGTCACCGGAGATGCGATCGTTTTTCGGAGGAATAACGTCGCCGACACCGGAAGTGGCATTGCCGATACCCAAGACGTTGAATTCGAGTGAATCGCCGGGATGGTGGAACCACCGTGACGGAGGAAACAAACGACTGAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGATATGAATGATGAAGCTTTTGGTGTTAACTTTTGA

Coding sequence (CDS)

ATGATTCCGATCAAATCCTCGGCCGCCATCGTCGCCTTCTTCTCACTGATCGCATCGATCGCGGCAGTGTCGGAGATACGCCCGTCAGAGCATGGGTTGGAGTTTCAGAGCCCTCCACCGGCTGGAGACAAATCGTCACCGGAGATGCGATCGTTTTTCGGAGGAATAACGTCGCCGACACCGGAAGTGGCATTGCCGATACCCAAGACGTTGAATTCGAGTGAATCGCCGGGATGGTGGAACCACCGTGACGGAGGAAACAAACGACTGAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGATATGAATGATGAAGCTTTTGGTGTTAACTTTTGA

Protein sequence

MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPTPEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGITDMNDEAFGVNF*
Homology
BLAST of Chy2G023550 vs. ExPASy TrEMBL
Match: A0A5D3CP09 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009600 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKS+AAIVAFFSLIA+IAAVSEIRPSEHGLEFQSPPPAG+KSSPEMRSFFGGITSPT
Sbjct: 1   MIPIKSAAAIVAFFSLIAAIAAVSEIRPSEHGLEFQSPPPAGEKSSPEMRSFFGGITSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 105
           PEVALPIPKT+NSSESPGWWNHRDGGNKRLRNALLVATAACGIT
Sbjct: 61  PEVALPIPKTMNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.3e-49
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPP GDKSSPEMRSFFGGI SPT
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 105
           PEVALPIPKTLNSSESPGWWNH DGGNKRLRNALLVATAACGIT
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.2e-38
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MI IKS AA+  +   I +I A  EIRPSEHGLEFQSPP AGDKSSPEMRSFFGG +SPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 105
           PEVALP+PK +NSSE+PGWW HRDGG+KRLRNALLVATAACG+T
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMT 104

BLAST of Chy2G023550 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.1e-38
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MI IKS AA+  +   I +IAA  EIRPSEHGLEFQS P AGDKSSPEMRSFFGG +SPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 105
           PEVALP+PK +NSSE+PGWW HRDGG+KRLRNALLVATAACGIT
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           +IPIK  AA+V F  LI ++A+  EIRPSEHGLEFQSPPPAG+KSSPEMRSFF G +SP 
Sbjct: 58  IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 117

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 105
           P+  LP+PK +NSSE+PGWW HRDGGNKR+RNALLVATAACGIT
Sbjct: 118 PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGIT 161

BLAST of Chy2G023550 vs. NCBI nr
Match: KAA0052489.1 (hypothetical protein E6C27_scaffold120G00880 [Cucumis melo var. makuwa] >TYK13335.1 hypothetical protein E5676_scaffold255G009600 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (518), Expect = 9.72e-66
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKS+AAIVAFFSLIA+IAAVSEIRPSEHGLEFQSPPPAG+KSSPEMRSFFGGITSPT
Sbjct: 1   MIPIKSAAAIVAFFSLIAAIAAVSEIRPSEHGLEFQSPPPAGEKSSPEMRSFFGGITSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104
           PEVALPIPKT+NSSESPGWWNHRDGGNKRLRNALLVATAACGIT
Sbjct: 61  PEVALPIPKTMNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. NCBI nr
Match: KAE8647762.1 (hypothetical protein Csa_003695 [Cucumis sativus])

HSP 1 Score: 203 bits (516), Expect = 2.98e-65
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPP GDKSSPEMRSFFGGI SPT
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104
           PEVALPIPKTLNSSESPGWWNH DGGNKRLRNALLVATAACGIT
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. NCBI nr
Match: XP_038881937.1 (uncharacterized protein LOC120073270 isoform X1 [Benincasa hispida])

HSP 1 Score: 187 bits (476), Expect = 6.06e-59
Identity = 94/115 (81.74%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKS AAIVAF  LI +IAA  EIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGI+SPT
Sbjct: 1   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGITDMNDEAFGVNF 115
           PEV LP+PKT+NSSESPGWW HRDGG+KR+RNALLVATAACGITD      G NF
Sbjct: 61  PEVELPLPKTMNSSESPGWWTHRDGGDKRVRNALLVATAACGITDKITRGTG-NF 114

BLAST of Chy2G023550 vs. NCBI nr
Match: XP_038881938.1 (uncharacterized protein LOC120073270 isoform X2 [Benincasa hispida])

HSP 1 Score: 185 bits (469), Expect = 3.18e-58
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MIPIKS AAIVAF  LI +IAA  EIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGI+SPT
Sbjct: 1   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104
           PEV LP+PKT+NSSESPGWW HRDGG+KR+RNALLVATAACGIT
Sbjct: 61  PEVELPLPKTMNSSESPGWWTHRDGGDKRVRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170 bits (430), Expect = 6.79e-52
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0

Query: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGITSPT 60
           MI IKS AA+  +   I +IAA  EIRPSEHGLEFQSPP AGDKSSPEMRSFFGG +SPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPIPKTLNSSESPGWWNHRDGGNKRLRNALLVATAACGIT 104
           PEVALP+PK +NSSE+PGWW HRDGG+KRLRNALLVATAACGIT
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGIT 104

BLAST of Chy2G023550 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 11  VAFFSLIASIAAVSEIRPSEHGLEFQ-SPPPAGDKSSP-EMRSFFGGITSPTPEVALP-- 70
           + F  +    +   E+RPS+HGL++Q S PP    S P +M+SFFG   S +P  + P  
Sbjct: 20  ITFLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQL 79

Query: 71  IPK--TLNSSESPGWWNHRDGGNKR----LRNALLVATAACGIT 105
           +PK    +  +   WW  RDG   R    +R+  L A+  CG++
Sbjct: 80  LPKATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVS 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CP093.1e-4996.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KM655.3e-4997.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1[more]
A0A6J1KMY34.2e-3876.92uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130... [more]
A0A6J1EFQ97.1e-3877.88uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337... [more]
A0A6J1EFW42.1e-3774.04uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330... [more]
Match NameE-valueIdentityDescription
KAA0052489.19.72e-6696.15hypothetical protein E6C27_scaffold120G00880 [Cucumis melo var. makuwa] >TYK1333... [more]
KAE8647762.12.98e-6597.12hypothetical protein Csa_003695 [Cucumis sativus][more]
XP_038881937.16.06e-5981.74uncharacterized protein LOC120073270 isoform X1 [Benincasa hispida][more]
XP_038881938.13.18e-5886.54uncharacterized protein LOC120073270 isoform X2 [Benincasa hispida][more]
XP_023518243.16.79e-5278.85uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT4G21740.15.8e-0833.65unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availablePANTHERPTHR37189:SF4CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..104
NoneNo IPR availablePANTHERPTHR37189CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G023550.1Chy2G023550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane