![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Chy2G023090 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTGTAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATACCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAGTAAATTCACTTCCCTCTTCCTTTCGTTTCATGTGATTTTCTTGATTTCCCATTTCGAATTTCCCCCCCAATTTGTCGCGTTTGCCTTTATTTCAGTTTTTCTGTTTCTCCTCTTAGGGTTTTCCTGTTTCTTTCCTTTTATTTTAGCTTTTTTGGTTGCTATCTTGATTCTTCTTGGTTTTGCCCCATTGTTGTTATTTATGCTATTTTTGTGGTTTTGGCTTATTTTTCAAGGCTTTCTTCTGCTGAAAGTTTACGCCGTTGTCTCAGTTTGGTTTGTTTATTATTAGCAATGATGAAATTTGTACGGAAGCATAGAAGGCACCATGAAAGTTCTGCAGCGTTCATTGTAAATAACCTAGAAAGTTAGATATTCTATGCATTGAATTGAAAATTTCCCAAGTTTATTAAGTATTGTTTATGGAGTTGTAAGAAAGAAATTGACCCTACACGTAAAAAGGTGGGGGTGATAAATTATCCCCCTCCCCAAGAAAGGGAAAACTGCAAGAAAGTTCTTGAATCTAAATTGAAATTGTTTATGAAACTGTAAACTACCTAGCAGTGAGAGAAGACCAGGACTTCGACCATGCGCCTGTTTAAAAGAAAAATGAACTGTATATAAATTGGGGACAATGTTAAAACAAATCCTGGTGACAATGTTAAAAAAAAAATCTTTTGTTGAATTGATTTAGATTGAAACTTTTCTTACATTTTCTGTGTGTAGGTGACCAGAGATACAGAGTTGATTATCTTGCTAATGGAAATTTTAATGCCTTTAGATTCTTAGCATATTTTATGGCTTATTTGGCTCACTAAACTTTTAGTTAAATAGATTTAGAAGCTAAAAGGATAGTTTTTATTTTATTTTATTTTTTATTATACTTTCCATGAAGGTCACACATATCAATTTGGTCCAATTTGATTCCTGAAAATGGGATTAGGAAGTAAAAGCATAATAATGTTAACACCTTAGATGTCCACTAACATAATGATAATGATGCTTAATGCAAGTGATGTGGAGTGGATAATAAAGCATTTATGGAGTACGGGAACTCATGTATTGATAATTATGTGAGTTTCGACACAGCTCTTTTTCTCCTTACTTTTAAGAATACGGACATAAAGGATTAATAATTTATTTGAAGTGAAAAAAAAAAAGTTAAGGTGAACTGTGGCTCTTGGTGTATATCTATGAAAATTCCCATTAGCCTTTTTTTGGAGTTTCCAGTCAACTTCCTTTCCTCATTTTTTTTTGTTATGTGTTTTCCTGCAATATGAATGACTTTCACCCTGACCCAATTATCCAACCCAACCATCGTCACATTTGGAGTGTACTTATCCATATTGAGGTTTTCATGGAAAACTATTGGTGACGTTCTTCACTTATTTTAGTTGATTCAGGAAAGGTGAGAAGAGAAGAAACAAAGTAGCATTGCCCTGTTTTCTATCTATTTAGCTATTTTTATTTTCATTTTTTCCTGTTTTCATTACACTGATAATTTTTTTTAGAGTGCAGAGTTCTGTTTAAGCATGGTGTAACTTAATATTAGTCAAAGTAAAAAGTCAACAGAAAACAAATACAATAGGAAAAGAACCTTGCAAACTGTCTTCTGAAGTGAACTAATTGAAAATATTTTTATTATTTTTGGAAAGCAGATTTTCAATAATTTGTGAGAGAAGTTTAAGAGAGCATTGTTCACTTCTAATTCATATGCCTTACGAATGCAACTTTTTCTTCATGAGTTTTCTTCTGCTATTTTCTTGTTCTGTTTTTTTTTTTTTTTTTGATGTCTTGTGAAGTCTAGATTTTAAGAAGCCTTGTATAGGAGGTTATTGCAATATCAAATCAATGGAATACTTTTTCTTGAGCACCTTTGAATGCTCAAACTCTGCTTCCATTAATTAAAAAACTATATGCAGATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGGTAATTGCATTTTTTGTTGGCTAATCTCCAACCAAGTCCAATAAGCCTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCGTTTATTCAATACACGTGCCAAGATGATGCGATGCTCGCTCTGGAAAATATGGATTGCAAGGTTAAAAACTTCACCTAGTTTTGTCTTTTGTAGATAAGGTAAATCATGCTTGAAAGTTAATGTTGTTTCTTCTGGGAGGCAGATATTTGATGGAAGGATGATCTATGTGGAAATTGCAACACTTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAACGAGTGGCCTAACGAGCGGCCTAACGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTGTAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATACCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCGTTTATTCAATACACGTGCCAAGATGATGCGATGCTCGCTCTGGAAAATATGGATTGCAAGATATTTGATGGAAGGATGATCTATGTGGAAATTGCAACACTTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAACGAGTGGCCTAACGAGCGGCCTAACGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTGTAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATACCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCGTTTATTCAATACACGTGCCAAGATGATGCGATGCTCGCTCTGGAAAATATGGATTGCAAGATATTTGATGGAAGGATGATCTATGTGGAAATTGCAACACTTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAACGAGTGGCCTAACGAGCGGCCTAACGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY* Homology
BLAST of Chy2G023090 vs. ExPASy Swiss-Prot
Match: Q54PB2 (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13 Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13 Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy Swiss-Prot
Match: Q4WJT7 (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mrd1 PE=3 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12 Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.0e-12 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy Swiss-Prot
Match: Q5BGA9 (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrd1 PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12 Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 5.5e-81 Identity = 150/158 (94.94%), Postives = 151/158 (95.57%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75 Identity = 141/158 (89.24%), Postives = 144/158 (91.14%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62 Identity = 126/158 (79.75%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 3.7e-61 Identity = 124/158 (78.48%), Postives = 131/158 (82.91%), Query Frame = 0
BLAST of Chy2G023090 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 5.9e-59 Identity = 117/158 (74.05%), Postives = 130/158 (82.28%), Query Frame = 0
BLAST of Chy2G023090 vs. NCBI nr
Match: XP_004134540.1 (glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 hypothetical protein Csa_003456 [Cucumis sativus]) HSP 1 Score: 308 bits (790), Expect = 1.09e-105 Identity = 150/158 (94.94%), Postives = 151/158 (95.57%), Query Frame = 0
BLAST of Chy2G023090 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]) HSP 1 Score: 288 bits (738), Expect = 8.04e-98 Identity = 141/158 (89.24%), Postives = 144/158 (91.14%), Query Frame = 0
BLAST of Chy2G023090 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima]) HSP 1 Score: 248 bits (632), Expect = 1.24e-81 Identity = 126/158 (79.75%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of Chy2G023090 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244 bits (624), Expect = 2.05e-80 Identity = 125/158 (79.11%), Postives = 131/158 (82.91%), Query Frame = 0
BLAST of Chy2G023090 vs. NCBI nr
Match: XP_038883016.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]) HSP 1 Score: 244 bits (624), Expect = 3.75e-80 Identity = 126/178 (70.79%), Postives = 133/178 (74.72%), Query Frame = 0
BLAST of Chy2G023090 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 167.5 bits (423), Expect = 8.4e-42 Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 0
BLAST of Chy2G023090 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0
BLAST of Chy2G023090 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14 Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of Chy2G023090 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14 Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of Chy2G023090 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding ) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13 Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|