Chy1G022350 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G022350
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 26754383 .. 26754707 (+)
RNA-Seq Expression	Chy1G022350
Synteny	Chy1G022350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGCAAAGGTGTGGCAATAACGTTGGTTTTGTTGCTGTTTTCATAGTTCTAATGGTGGTTTCTTCTGCCCCTGATCTCATGCTAATTAGTACCTCCCATGCAGCTCGTTTGGCCAAAATAGGTGAGCAAATTTCATACATCAATTTGGATATATATATATAATGTTTAAGATTGAATACATAATTGGATATATGTGTATATAATGGTTTGGTTTTGGGTATGGACAGATCCACCAATGTGTCCTCAATGCATGTGTTGTAGTTCACCACCACCAGGGTTTTGCTGTGATTGCTGCCCCAATTCTCAGTTGCCACCATGA

mRNA sequence

ATGGCTCTGCAAAGGTGTGGCAATAACGTTGGTTTTGTTGCTGTTTTCATAGTTCTAATGGTGGTTTCTTCTGCCCCTGATCTCATGCTAATTAGTACCTCCCATGCAGCTCGTTTGGCCAAAATAGATCCACCAATGTGTCCTCAATGCATGTGTTGTAGTTCACCACCACCAGGGTTTTGCTGTGATTGCTGCCCCAATTCTCAGTTGCCACCATGA

Coding sequence (CDS)

ATGGCTCTGCAAAGGTGTGGCAATAACGTTGGTTTTGTTGCTGTTTTCATAGTTCTAATGGTGGTTTCTTCTGCCCCTGATCTCATGCTAATTAGTACCTCCCATGCAGCTCGTTTGGCCAAAATAGATCCACCAATGTGTCCTCAATGCATGTGTTGTAGTTCACCACCACCAGGGTTTTGCTGTGATTGCTGCCCCAATTCTCAGTTGCCACCATGA

Protein sequence

MALQRCGNNVGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDPPMCPQCMCCSSPPPGFCCDCCPNSQLPP*

Homology

[Close]

BLAST of Chy1G022350 vs. ExPASy TrEMBL
Match: A0A0A0K9Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDPPMCPQCMCCSSPPPGF 60
          MALQRCGNNVGFVAVFIVLMVVSSAPDLMLI+TSHAARLAKIDPPMCPQCMCCSSPPPGF
Sbjct: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGF 60

Query: 61 CCDCCPNSQLPP 73
          CCDCC NSQLPP
Sbjct: 61 CCDCCSNSQLPP 72

[Close]

BLAST of Chy1G022350 vs. ExPASy TrEMBL
Match: A0A5D3BXX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00520 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MAL-QRCG-NNVGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDPPMCPQCMCCSSPPP 60
          MAL QRCG NN+G VAVFIVLMVVSS PDLMLI+TSHAARLAKIDPPMCPQCMCCSSPPP
Sbjct: 1  MALQQRCGNNNIGLVAVFIVLMVVSS-PDLMLITTSHAARLAKIDPPMCPQCMCCSSPPP 60

Query: 61 GFCCDCCPNSQLPP 73
          GFCCDCC NSQLPP
Sbjct: 61 GFCCDCCSNSQLPP 73

[Close]

BLAST of Chy1G022350 vs. ExPASy TrEMBL
Match: B9RQ96 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 13 VAVFIVLMVVSSAPDLMLISTSHAARLAK--------IDPPMCPQCMCCSSPPPGFCCDC 72
          V +FI+LMV+      +++  ++AAR A+         + PMCPQC CCS+PPPG CC C
Sbjct: 11 VTIFIILMVLP-----LMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCCKC 70

[Close]

BLAST of Chy1G022350 vs. NCBI nr
Match: KAA0059465.1 (hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK03858.1 hypothetical protein E5676_scaffold347G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 1.01e-36
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 4  QRCGNN-VGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDPPMCPQCMCCSSPPPGFCC 63
          QRCGNN +G VAVFIVLMVVSS PDLMLI+TSHAARLAKIDPPMCPQCMCCSSPPPGFCC
Sbjct: 5  QRCGNNNIGLVAVFIVLMVVSS-PDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGFCC 64

Query: 64 DCCPNSQLPP 72
          DCC NSQLPP
Sbjct: 65 DCCSNSQLPP 73

[Close]

BLAST of Chy1G022350 vs. NCBI nr
Match: EEF46335.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.1 bits (131), Expect = 7.19e-08
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 11 GFVAVFIVLMVVSSAPDLMLISTSHAARLAKI--------DPPMCPQCMCCSSPPPGFCC 70
            V +FI+LMV+      +++  ++AAR A+         + PMCPQC CCS+PPPG CC
Sbjct: 9  SLVTIFIILMVLP-----LMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCC 68

[Close]

BLAST of Chy1G022350 vs. NCBI nr
Match: KAF3450659.1 (hypothetical protein FNV43_RR06748 [Rhamnella rubrinervis])

HSP 1 Score: 53.9 bits (128), Expect = 1.86e-07
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDP-PMCPQCMCCSSPPPG 60
          MA          V +FI  MV+SS+     +STS  AR   +D  P+CP C+CCS+PPPG
Sbjct: 1  MAADTLSLRSTLVTLFIFAMVLSSS-----LSTSDGARFFYLDATPICPACVCCSTPPPG 60

Query: 61 FCCDCC 65
           CCDCC
Sbjct: 61 SCCDCC 61

[Close]

BLAST of Chy1G022350 vs. NCBI nr
Match: KAF3450660.1 (hypothetical protein FNV43_RR06749 [Rhamnella rubrinervis])

HSP 1 Score: 53.1 bits (126), Expect = 3.66e-07
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLISTSHAARLAKIDP-PMCPQCMCCSSPPPG 60
          MA          V +FI  MV+SS      +STS  AR   +D  P+CP C+CCS+PPPG
Sbjct: 1  MAADALSLRSPLVTLFIFAMVLSS------LSTSDGARFFYLDATPICPACVCCSTPPPG 60

Query: 61 FCCDCC 65
           CCDCC
Sbjct: 61 SCCDCC 60

[Close]

BLAST of Chy1G022350 vs. NCBI nr
Match: EEF46340.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 49.7 bits (117), Expect = 9.50e-06
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 15 VFIVLMVVSSAPDLMLISTSHAARLAKI--------DPPMCPQCMCCSSPPPGFCCDCCP 71
          +FIV+MV+      +++  ++AAR  +         + PMCPQC CCSSPPPG CC CC 
Sbjct: 13 IFIVVMVLP-----LVVPPANAARFTRQGIIEVSLKEDPMCPQCACCSSPPPGSCCKCCT 72

The following BLAST results are available for this feature:

BLAST of Chy1G022350 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G022350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Q7	3.7e-32	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1	[more]
A0A5D3BXX8	1.0e-26	90.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
B9RQ96	6.5e-05	44.78	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1	[more]

BLAST of Chy1G022350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059465.1	1.01e-36	91.43	hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK038...	[more]
EEF46335.1	7.19e-08	43.48	conserved hypothetical protein [Ricinus communis]	[more]
KAF3450659.1	1.86e-07	46.97	hypothetical protein FNV43_RR06748 [Rhamnella rubrinervis]	[more]
KAF3450660.1	3.66e-07	46.97	hypothetical protein FNV43_RR06749 [Rhamnella rubrinervis]	[more]
EEF46340.1	9.50e-06	43.08	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of Chy1G022350 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G022350.1	Chy1G022350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane