Chy1G021300 (gene) Cucumber (hystrix) v1

Overview
NameChy1G021300
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLate embryogenesis abundant protein
LocationchrH01: 25978041 .. 25978422 (-)
RNA-Seq ExpressionChy1G021300
SyntenyChy1G021300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGTCGATCCTTCTCGTGCTGGTTTTATGTATTTAATTCTCGGTTCCATTCTTTGTGTGTGTTTCTTTCGTGTTCTTGTCTAATTTAGCAATGTAATGGCAGGCGAATGAGCTCTTTGGTTGCATCTGAGCCACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGAGCGGTTATGATAATGAAGTAGTTGAACAAAAGAAGTCGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAA

mRNA sequence

ATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTTGGTTGCATCTGAGCCACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGAGCGGTTATGATAATGAAGTAGTTGAACAAAAGAAGTCGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAA

Coding sequence (CDS)

ATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTTGGTTGCATCTGAGCCACTTAAGGCACAAACAACTGCGTCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGAGCGGTTATGATAATGAAGTAGTTGAACAAAAGAAGTCGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAA

Protein sequence

MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMKDPKSGNWIPENHFEEMDVVELREKLLAKPKKLL*
Homology
BLAST of Chy1G021300 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMK 60
          MAKVTGNSLYFIRRMSS VASE LKAQTTASMVVRKVKAAVET GYDNEVVEQKK+FWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 94
          DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 93

BLAST of Chy1G021300 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.9e-30
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 0

Query: 15 MSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMKDPKSGNWIPENHFE 74
          MSS +ASE LKAQTTASMVVRKVKAAVETS YDNEVVEQKK+FWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EMDVVELREKLLAKPK 91
          E+DVVELREKLLAKPK
Sbjct: 61 EIDVVELREKLLAKPK 76

BLAST of Chy1G021300 vs. ExPASy TrEMBL
Match: A0A6J1B6Z6 (uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC110424687 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS++        E       + EQK++FWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRTEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DVVELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVVELREKFLSKKQK 85

BLAST of Chy1G021300 vs. ExPASy TrEMBL
Match: A0A061G6G1 (Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_016756 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.4e-12
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS++        E       + EQK++FWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DV ELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of Chy1G021300 vs. ExPASy TrEMBL
Match: A0A6A1VZA4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MAKVTGNS-LYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWM 60
          MAKV  N+ L+  RR  S+   E ++     +   RK   A E+SG   E  EQK++FWM
Sbjct: 1  MAKVFINTLLHLSRRSFSVAVLENIRRVQPVTTATRK---AAESSG--AEATEQKENFWM 60

Query: 61 KDPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 94
          KD KSGNWIPE+HF E+DVV+LREKLL + KKL+
Sbjct: 61 KDLKSGNWIPESHFGEIDVVDLREKLLPRQKKLM 89

BLAST of Chy1G021300 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 1.65e-44
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 15 MSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMKDPKSGNWIPENHFE 74
          MSS VASE LKAQTTASMVVRKVKAAVET GYDNEVVEQKK+FWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EMDVVELREKLLAKPKKLL 93
          EMDVVELREKLLAKPKKLL
Sbjct: 61 EMDVVELREKLLAKPKKLL 79

BLAST of Chy1G021300 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 5.02e-41
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 0

Query: 15 MSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMKDPKSGNWIPENHFE 74
          MSS +ASE LKAQTTASMVVRKVKAAVETS YDNEVVEQKK+FWMKDPKSGNWIPENHFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EMDVVELREKLLAKPK 90
          E+DVVELREKLLAKPK
Sbjct: 61 EIDVVELREKLLAKPK 76

BLAST of Chy1G021300 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133 bits (335), Expect = 2.28e-38
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDN-EVVEQKKSFWM 60
          MAK+TGN +YFIRR+SSLVASE LKA+ TA M V+ V A VETSG D+ + VEQK  FWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPENHFEEMDVVELREKLLAKPKKL 92
          KDPKSGNWIPENHF E+DVVELREKLL+K KKL
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKL 93

BLAST of Chy1G021300 vs. NCBI nr
Match: XP_022843012.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sylvestris] >CAA3012453.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 87.0 bits (214), Expect = 4.57e-20
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMK 60
          MAK + NSL  + R  S VA+E  K QTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLSRRESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 91
          DPK+GNWIPE HFE++DV ELREKLL+K  K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSKKTK 80

BLAST of Chy1G021300 vs. NCBI nr
Match: CAA3012452.1 (SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 85.5 bits (210), Expect = 1.80e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 1  MAKVTGNSLYFIRRMSSLVASEPLKAQTTASMVVRKVKAAVETSGYDNEVVEQKKSFWMK 60
          MAK + NSL  +RR  S VA+E  K QTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLRR-ESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 91
          DPK+GNWIPE HFE++DV ELREKLL+K  K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSKKTK 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L42.1e-4095.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1[more]
A0A5D3BWU29.9e-3092.11Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1B6Z61.9e-1246.15uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A061G6G15.4e-1245.05Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_016756... [more]
A0A6A1VZA47.1e-1251.06Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8646489.11.65e-4494.94hypothetical protein Csa_015817 [Cucumis sativus][more]
KAA0059359.15.02e-4192.11putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1... [more]
KAG6575415.12.28e-3874.19hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022843012.14.57e-2051.65protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sy... [more]
CAA3012452.11.80e-1952.75SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 13..86
e-value: 1.6E-13
score: 51.1
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 2..90
NoneNo IPR availablePANTHERPTHR33509:SF21OS02G0564600 PROTEINcoord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G021300.1Chy1G021300.1mRNA