Chy1G020730 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G020730
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribosomal protein L37
Location	chrH01: 25516029 .. 25516998 (+)
RNA-Seq Expression	Chy1G020730
Synteny	Chy1G020730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACATCTCTTCCACTTTCTTTTTCTTCATCGATTTATTCTTATGTGTAGTTGGTTTCATCTCTGTATTATTGTTCGATTAATTTACAGGGAAAGGGTACGGGCAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGTGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGTTGTGCAGCATGTGCTTTTCCTGCTGCTCGCAAGCGCAAATGTGAGTCATATCCATTTTTCTGCATTTTCGTCAATCTTCTTTTTACTTATATTGATCTAAATCGGCTGTTTAGCTCGGGTTTACTTTGATTCAATGTGTTGCTGCTTTGGATTTGTTTAGTGAACACTCTGTATATATGGTAGTTAGTGGTTAGTATTGAGGTGCTATCCATGAACGAGGAGGCTTAAGTATGTGTGATAATTGATGAGATTCGTTCGCTTGGTTATGTAATATGACTACACGAGACGTTTGTATGGGTTGTAGTGTTCTATGGTTTGTGGATTGGTTTTGATTGCTTTCTCTGGCTTTGGGCTTTGTTTAGATAACTGGAGTGTGAAGGCAATTAGAAGAAAGACAACCGGAACTGGAAGGATGAGGTACTTGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTATGATGATATCTTTTTCATTATAACATAATAGCACACTTCAGTTCCAACTGATTTATCAAAAACTATACTTATGCTCTAATAATTAAACTCGTTCTTCCCCCGTTTACTTTGAGCTTGTTTTTATTGACTTTTTGAGTGTTTATAAACTGTTTAATTGCATTTATAAACACTTTGGAAAGTCAATTCAAACACACCCATCATTTGTTTTGAGTTTTGATACCAGTTTTAGCAGTATTCTGACCGAAAAATGTTTTGGGTCGGTGATTAGGTACTGAAGCTGCACCCAGGAATAAAGGAGCTGCAGCATCAGCATAA

mRNA sequence

ATGGGAAAGGGTACGGGCAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGTGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGTTGTGCAGCATGTGCTTTTCCTGCTGCTCGCAAGCGCAAATATAACTGGAGTGTGAAGGCAATTAGAAGAAAGACAACCGGAACTGGAAGGATGAGGTACTTGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAATAAAGGAGCTGCAGCATCAGCATAA

Coding sequence (CDS)

ATGGGAAAGGGTACGGGCAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGTGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGTTGTGCAGCATGTGCTTTTCCTGCTGCTCGCAAGCGCAAATATAACTGGAGTGTGAAGGCAATTAGAAGAAAGACAACCGGAACTGGAAGGATGAGGTACTTGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAATAAAGGAGCTGCAGCATCAGCATAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA*

Homology

[Close]

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 7.6e-43
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.5e-42
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 131.3 bits (329), Expect = 5.7e-30
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMR+++ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot
Match: Q9VXX8 (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.4e-30
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C +PAA+ R YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAA 93
          TGRM++L+ V RRF++GFREGT+A P+   A+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]

BLAST of Chy1G020730 vs. ExPASy TrEMBL
Match: A0A5D3BYC5 (Ribosomal protein L37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002270 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy TrEMBL
Match: A0A0A0K941 (Ribosomal protein L37 OS=Cucumis sativus OX=3659 GN=Csa_7G446890 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy TrEMBL
Match: A0A1S3CGU0 (Ribosomal protein L37 OS=Cucumis melo OX=3656 GN=LOC103500584 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy TrEMBL
Match: A0A6J1HHN6 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. ExPASy TrEMBL
Match: A0A6J1JVQ3 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.5e-45
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]

BLAST of Chy1G020730 vs. NCBI nr
Match: XP_004141772.1 (60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S ribosomal protein L37-3-like [Cucumis melo] >XP_038896143.1 60S ribosomal protein L37-3-like [Benincasa hispida] >KAA0059300.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa] >KGN45374.1 hypothetical protein Csa_016423 [Cucumis sativus] >TYK04028.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (485), Expect = 3.36e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6593459.1 60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (480), Expect = 1.95e-60
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. NCBI nr
Match: XP_022953178.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023548197.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6575534.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014078.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188 bits (477), Expect = 5.59e-60
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]

BLAST of Chy1G020730 vs. NCBI nr
Match: XP_038902074.1 (60S ribosomal protein L37-3 [Benincasa hispida])

HSP 1 Score: 188 bits (477), Expect = 5.59e-60
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYLRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. NCBI nr
Match: XP_023000413.1 (60S ribosomal protein L37-3-like [Cucurbita maxima])

HSP 1 Score: 187 bits (476), Expect = 7.94e-60
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+C+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of Chy1G020730 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-44
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Chy1G020730 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 173.3 bits (438), Expect = 9.3e-44
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Chy1G020730 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 171.0 bits (432), Expect = 4.6e-43
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYLR+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:

BLAST of Chy1G020730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43292	7.6e-43	88.42	60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2	[more]
Q8LEM8	1.3e-42	87.37	60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1	[more]
Q8LFH7	6.5e-42	86.32	60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1	[more]
Q90YT1	5.7e-30	67.37	60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3	[more]
Q9VXX8	7.4e-30	68.48	Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37...	[more]

BLAST of Chy1G020730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYC5	7.7e-46	100.00	Ribosomal protein L37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34...	[more]
A0A0A0K941	7.7e-46	100.00	Ribosomal protein L37 OS=Cucumis sativus OX=3659 GN=Csa_7G446890 PE=3 SV=1	[more]
A0A1S3CGU0	7.7e-46	100.00	Ribosomal protein L37 OS=Cucumis melo OX=3656 GN=LOC103500584 PE=3 SV=1	[more]
A0A6J1HHN6	2.9e-45	97.89	Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1	[more]
A0A6J1JVQ3	6.5e-45	96.84	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1	[more]

BLAST of Chy1G020730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141772.1	3.36e-61	100.00	60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S rib...	[more]
XP_022964011.1	1.95e-60	97.89	60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso...	[more]
XP_022953178.1	5.59e-60	96.84	60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S riboso...	[more]
XP_038902074.1	5.59e-60	97.89	60S ribosomal protein L37-3 [Benincasa hispida]	[more]
XP_023000413.1	7.94e-60	96.84	60S ribosomal protein L37-3-like [Cucurbita maxima]	[more]

BLAST of Chy1G020730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52300.1	5.4e-44	88.42	Zinc-binding ribosomal protein family protein	[more]
AT3G16080.1	9.3e-44	87.37	Zinc-binding ribosomal protein family protein	[more]
AT1G15250.1	4.6e-43	86.32	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001569	Ribosomal protein L37e	PFAM	PF01907	Ribosomal_L37e	coord: 3..53 e-value: 4.6E-26 score: 90.7
IPR001569	Ribosomal protein L37e	HAMAP	MF_00547	Ribosomal_L37e	coord: 2..53 score: 16.240541
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..87 e-value: 8.9E-47 score: 159.2
None	No IPR available	PANTHER	PTHR10768:SF28	RIBOSOMAL PROTEIN L37	coord: 1..95
None	No IPR available	PANTHER	PTHR10768	60S RIBOSOMAL PROTEIN L37	coord: 1..95
IPR018267	Ribosomal protein L37e, conserved site	PROSITE	PS01077	RIBOSOMAL_L37E	coord: 4..23
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G020730.1	Chy1G020730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome