Chy1G020480 (gene) Cucumber (hystrix) v1

Overview
NameChy1G020480
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionthionin-like protein 2
LocationchrH01: 25292562 .. 25292883 (+)
RNA-Seq ExpressionChy1G020480
SyntenyChy1G020480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTAATTGTTTGTCTATTCCTAAGCTCGCTCTCCATCGCCGATTCCTTCTTCGACGATCAAACTCAGCTTGACATCTGCTTCAAATCTTGTTTAGGCGTATGCCTTTACGATAAGAAAAGCATTCGTTTATTGTGCCCGTTCAAATGCACCAAAATTTGCGTGGCCGACCCGTGGACCAAAAATTTCCAAGCCCTACTAGTCAAAAAGGATTCATCCTGTGAGCTCGACTGCGCAACTTCTAAGTGTACCAACTTAATTAGCACGAAGGAAATGAAGGATGTTATAG

mRNA sequence

ATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTAATTGTTTGTCTATTCCTAAGCTCGCTCTCCATCGCCGATTCCTTCTTCGACGATCAAACTCAGCTTGACATCTGCTTCAAATCTTGTTTAGGCGTATGCCTTTACGATAAGAAAAGCATTCGTTTATTGTGCCCGTTCAAATGCACCAAAATTTGCGTGGCCGACCCGTGGACCAAAAATTTCCAAGCCCTACTAGTCAAAAAGGATTCATCCTGTGAGCTCGACTGCGCAACTTCTAAGTGTACCAACTTAATTAGCACGAAGGAAATGAAGGATGTTATAG

Coding sequence (CDS)

ATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTAATTGTTTGTCTATTCCTAAGCTCGCTCTCCATCGCCGATTCCTTCTTCGACGATCAAACTCAGCTTGACATCTGCTTCAAATCTTGTTTAGGCGTATGCCTTTACGATAAGAAAAGCATTCGTTTATTGTGCCCGTTCAAATGCACCAAAATTTGCGTGGCCGACCCGTGGACCAAAAATTTCCAAGCCCTACTAGTCAAAAAGGATTCATCCTGTGAGCTCGACTGCGCAACTTCTAAGTGTACCAACTTAATTAGCACGAAGGAAATGAAGGATGTTATAG

Protein sequence

MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFKCTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNLISTKEMKDVIX
Homology
BLAST of Chy1G020480 vs. ExPASy TrEMBL
Match: A0A0A0KC12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G440620 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.5e-45
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFK 60
           MESSNVMA+KCGLIVCLFLSSLSIA SFFDD+TQ++ICFKSCL VCLYDKKSIR LCP K
Sbjct: 1   MESSNVMAIKCGLIVCLFLSSLSIAHSFFDDKTQVEICFKSCLNVCLYDKKSIRFLCPLK 60

Query: 61  CTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNLISTKEMKD 106
           CTKICVADPWTKNFQALL KKDSSCELDCATSKCTN IST ++ D
Sbjct: 61  CTKICVADPWTKNFQALLTKKDSSCELDCATSKCTNSISTNDIID 105

BLAST of Chy1G020480 vs. ExPASy TrEMBL
Match: A0A1S3CDU0 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499746 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.3e-29
Identity = 72/105 (68.57%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFK 60
           MESSNVMAMKCGLIV LFLSSLSIADSF D+ T L  CFKSCL  C+ +KK+ RLLCPFK
Sbjct: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60

Query: 61  CTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNLISTKEMKD 106
           CTKICVADP T +F+ + V   SSCEL CA S C    STKE  D
Sbjct: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGE-FSTKENPD 104

BLAST of Chy1G020480 vs. NCBI nr
Match: KGN45341.1 (hypothetical protein Csa_015540 [Cucumis sativus])

HSP 1 Score: 191 bits (484), Expect = 2.04e-60
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFK 60
           MESSNVMA+KCGLIVCLFLSSLSIA SFFDD+TQ++ICFKSCL VCLYDKKSIR LCP K
Sbjct: 1   MESSNVMAIKCGLIVCLFLSSLSIAHSFFDDKTQVEICFKSCLNVCLYDKKSIRFLCPLK 60

Query: 61  CTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNLISTKEMKD 105
           CTKICVADPWTKNFQALL KKDSSCELDCATSKCTN IST ++ D
Sbjct: 61  CTKICVADPWTKNFQALLTKKDSSCELDCATSKCTNSISTNDIID 105

BLAST of Chy1G020480 vs. NCBI nr
Match: XP_008461040.1 (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 136 bits (342), Expect = 8.46e-39
Identity = 72/105 (68.57%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFK 60
           MESSNVMAMKCGLIV LFLSSLSIADSF D+ T L  CFKSCL  C+ +KK+ RLLCPFK
Sbjct: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60

Query: 61  CTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNLISTKEMKD 105
           CTKICVADP T +F+ + V   SSCEL CA S C    STKE  D
Sbjct: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEF-STKENPD 104

BLAST of Chy1G020480 vs. NCBI nr
Match: XP_038896425.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 3.42e-10
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 1   MESSNVMAMKCGLIVCLFLSSLSIADSFFDDQTQLDICFKSCLGVCLYDKKSIRLLCPFK 60
           MESS  MAMK  L+ CL LSSLSIA+S   +      C+ SC GVC          CP +
Sbjct: 1   MESS--MAMKWALMACLLLSSLSIANSEPANSEPFQECYSSCFGVCSLGPSIYIFDCPLR 60

Query: 61  CTKICVADPWTKNFQALLVKKDSS---CELDCATSKCTNLISTKE 102
           C   C+A P   N +    ++      C+L CATS CT    TKE
Sbjct: 61  CLHSCIALPSNDNAEFHQPQQQHHQFYCKLGCATSTCTGF-GTKE 102

BLAST of Chy1G020480 vs. NCBI nr
Match: TXG69125.1 (hypothetical protein EZV62_004060 [Acer yangbiense])

HSP 1 Score: 47.0 bits (110), Expect = 6.58e-04
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0

Query: 38  CFKSCLGVCLYDKKSIRLLCPFKCTKICVADPWTKNFQALLVKKDSSCELDCATSKCTNL 97
           C++SC   C+  ++S+ L C  KC K C+ D ++ +    L   D  C+L CATS CTNL
Sbjct: 30  CYESCFLTCMISERSL-LKCGAKCLKKCIFDTYSSH---TLKHTDYFCKLGCATSLCTNL 88

Query: 98  ISTK 101
            STK
Sbjct: 90  -STK 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KC122.5e-4586.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G440620 PE=4 SV=1[more]
A0A1S3CDU07.3e-2968.57thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499746 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN45341.12.04e-6086.67hypothetical protein Csa_015540 [Cucumis sativus][more]
XP_008461040.18.46e-3968.57PREDICTED: thionin-like protein 2 [Cucumis melo][more]
XP_038896425.13.42e-1040.95thionin-like protein 2 [Benincasa hispida][more]
TXG69125.16.58e-0442.19hypothetical protein EZV62_004060 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G020480.1Chy1G020480.1mRNA