Chy1G020160 (gene) Cucumber (hystrix) v1

Overview
NameChy1G020160
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description39S ribosomal protein L41-A, mitochondrial-like
LocationchrH01: 25071633 .. 25072642 (-)
RNA-Seq ExpressionChy1G020160
SyntenyChy1G020160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTATTCATCTCCTCCATCGATCCTAATATAATTTTAGGTTTTATGCTTATTTATGTTGGACGATAACATGTTTGATTGTTTGATTAATTGGTTTCGAGTTACTGCTGCTGGATCCACTTGTAATTTAGTAAAGAGTTGAAAATCATTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTGTTGAGTTACTTTTAATACTAGATTTTTCTATTTGAATTTTGTATGGTTCTATCGATAATTGCTGTTGTTCAAAATGTGTAAATTTCTTGCAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGGTATTTTTGCTAATAGTTGTTTTTTCTAAAATTTAGAACTGATATCTCCCTTTTCTATCCACGACACATCTAAGTATTCTGAATATGATTGTGGAGACTAAAATAGGCTACCAGGGAAAAGGTGTACAAAATCTGTATTGGCTTTGTGTGCTTCCCGTAGTTCTTGGGTTACCTTTTTTTTTTCTTCTTTACTCACTATATGTGGGTGGGGAAATCAACCTCTAACCTCAAAATGAATTATTTTGTTGGTTACTTTCTTGTGTTCCTTTCGAAATTTATTAGATTTATATGCTTTCCTGAAATCTGAATTCTGATTTGCATTCTCTCCTTATTTCCTTTAAATGAATTATTTCTTGCTGGGTATTTCGTGAGTGATTTCGTGCAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG

mRNA sequence

ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG

Coding sequence (CDS)

ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG

Protein sequence

MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKRAFVLQFFLIASQTILLSQLLVGKVELGDFLSALLRKFVYVWLQRN*
Homology
BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 71
          +SKR PR + K +  K TG +T    +V + E +P +VVPDL+ FK
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFK 67

BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 71
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDL+ FK
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFK 66

BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 0

Query: 3  LGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  + R + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLISKIARGLVRGADRMAE-CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 60

Query: 63 VPDLSDFK 71
          VPDL+ FK
Sbjct: 61 VPDLTGFK 67

BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.0e-04
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0

Query: 3  LGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLITKIARGLVRGADRMAE-CTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLSDFK 71
          VPDL+ FK
Sbjct: 61 VPDLTGFK 67

BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A5A7UUA4 (39S ribosomal protein L41-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002260 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 71
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 71
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A1S3CEC5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103499774 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 71
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-30
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 71
          Y+VPDL+DFK
Sbjct: 61 YIVPDLTDFK 70

BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: B9RJQ0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+GR  RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLSDFKRAFV 75
          YVVPDL+DFK  F+
Sbjct: 61 YVVPDLTDFKVIFL 74

BLAST of Chy1G020160 vs. NCBI nr
Match: KAA0058778.1 (39S ribosomal protein L41-A [Cucumis melo var. makuwa] >TYK10572.1 39S ribosomal protein L41-A [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 3.25e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 70
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. NCBI nr
Match: XP_004135839.1 (39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >KGN45301.1 hypothetical protein Csa_015853 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 6.02e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 70
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. NCBI nr
Match: XP_008461075.1 (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo])

HSP 1 Score: 143 bits (361), Expect = 6.02e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 70
          YVVPDLSDFK
Sbjct: 61 YVVPDLSDFK 70

BLAST of Chy1G020160 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 140 bits (354), Expect = 7.02e-41
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 70
          YVVPDL+DFK
Sbjct: 61 YVVPDLTDFK 70

BLAST of Chy1G020160 vs. NCBI nr
Match: XP_022143129.1 (39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia])

HSP 1 Score: 140 bits (353), Expect = 9.96e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFK 70
          Y+VPDL+DFK
Sbjct: 61 YIVPDLTDFK 70

BLAST of Chy1G020160 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-28
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFK 71
          PDL+ FK
Sbjct: 66 PDLTGFK 72

BLAST of Chy1G020160 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFK 71
          PDL+ FK
Sbjct: 66 PDLTGFK 72

BLAST of Chy1G020160 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-26
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1   MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
           M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YVVPDLSDFK-RAFVLQFFLIASQT 85
           YVVPDL+ FK + +V Q  L  ++T
Sbjct: 135 YVVPDLTGFKLKPYVSQCPLDVNKT 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9CQN72.2e-0443.4839S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1... [more]
Q5BJX12.2e-0445.6539S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41... [more]
Q6DJI42.9e-0438.2439S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a... [more]
Q6INF35.0e-0438.2439S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b... [more]
Match NameE-valueIdentityDescription
A0A5A7UUA41.7e-31100.0039S ribosomal protein L41-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0KBX41.7e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1[more]
A0A1S3CEC51.7e-31100.0039S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1CNE91.4e-3095.7139S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC... [more]
B9RJQ04.2e-3089.19Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KAA0058778.13.25e-42100.0039S ribosomal protein L41-A [Cucumis melo var. makuwa] >TYK10572.1 39S ribosomal... [more]
XP_004135839.16.02e-42100.0039S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S... [more]
XP_008461075.16.02e-42100.00PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo][more]
XP_038897038.17.02e-4197.1439S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida][more]
XP_022143129.19.96e-4195.7139S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1... [more]
Match NameE-valueIdentityDescription
AT5G39800.13.9e-2882.09Mitochondrial ribosomal protein L27 [more]
AT5G40080.15.1e-2882.09Mitochondrial ribosomal protein L27 [more]
AT4G09012.13.6e-2669.41Mitochondrial ribosomal protein L27 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 24..70
e-value: 1.4E-11
score: 44.2
IPR019189Ribosomal protein L27/L41, mitochondrialPANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G020160.1Chy1G020160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome