Chy1G020160 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTATTCATCTCCTCCATCGATCCTAATATAATTTTAGGTTTTATGCTTATTTATGTTGGACGATAACATGTTTGATTGTTTGATTAATTGGTTTCGAGTTACTGCTGCTGGATCCACTTGTAATTTAGTAAAGAGTTGAAAATCATTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTGTTGAGTTACTTTTAATACTAGATTTTTCTATTTGAATTTTGTATGGTTCTATCGATAATTGCTGTTGTTCAAAATGTGTAAATTTCTTGCAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGGTATTTTTGCTAATAGTTGTTTTTTCTAAAATTTAGAACTGATATCTCCCTTTTCTATCCACGACACATCTAAGTATTCTGAATATGATTGTGGAGACTAAAATAGGCTACCAGGGAAAAGGTGTACAAAATCTGTATTGGCTTTGTGTGCTTCCCGTAGTTCTTGGGTTACCTTTTTTTTTTCTTCTTTACTCACTATATGTGGGTGGGGAAATCAACCTCTAACCTCAAAATGAATTATTTTGTTGGTTACTTTCTTGTGTTCCTTTCGAAATTTATTAGATTTATATGCTTTCCTGAAATCTGAATTCTGATTTGCATTCTCTCCTTATTTCCTTTAAATGAATTATTTCTTGCTGGGTATTTCGTGAGTGATTTCGTGCAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGAGAGCTTTCGTGCTACAGTTTTTTCTAATTGCTTCCCAAACGATTCTTTTGAGTCAATTACTTGTGGGGAAAGTAGAGCTAGGGGACTTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAAGGAACTAG MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKRAFVLQFFLIASQTILLSQLLVGKVELGDFLSALLRKFVYVWLQRN* Homology
BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04 Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04 Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04 Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.0e-04 Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A5A7UUA4 (39S ribosomal protein L41-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002260 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A1S3CEC5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103499774 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.4e-30 Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of Chy1G020160 vs. ExPASy TrEMBL
Match: B9RJQ0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30 Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of Chy1G020160 vs. NCBI nr
Match: KAA0058778.1 (39S ribosomal protein L41-A [Cucumis melo var. makuwa] >TYK10572.1 39S ribosomal protein L41-A [Cucumis melo var. makuwa]) HSP 1 Score: 143 bits (361), Expect = 3.25e-42 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. NCBI nr
Match: XP_004135839.1 (39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >KGN45301.1 hypothetical protein Csa_015853 [Cucumis sativus]) HSP 1 Score: 143 bits (361), Expect = 6.02e-42 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. NCBI nr
Match: XP_008461075.1 (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]) HSP 1 Score: 143 bits (361), Expect = 6.02e-42 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Chy1G020160 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]) HSP 1 Score: 140 bits (354), Expect = 7.02e-41 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of Chy1G020160 vs. NCBI nr
Match: XP_022143129.1 (39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia]) HSP 1 Score: 140 bits (353), Expect = 9.96e-41 Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of Chy1G020160 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 ) HSP 1 Score: 121.7 bits (304), Expect = 3.9e-28 Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0
BLAST of Chy1G020160 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 ) HSP 1 Score: 121.3 bits (303), Expect = 5.1e-28 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Chy1G020160 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 ) HSP 1 Score: 115.2 bits (287), Expect = 3.6e-26 Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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